Wall clock time and date at job start Tue Mar 31 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46977 * 2 1 4 4 C 1.46506 * 119.99524 * 90.00690 * 3 2 1 5 5 C 1.50698 * 109.47006 * 269.99278 * 4 3 2 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 C 1.34774 * 120.00119 * 269.99906 * 3 2 1 14 14 O 1.21285 * 119.99988 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00181 * 0.02562 * 13 3 2 16 16 H 1.08995 * 110.04802 * 59.28922 * 15 13 3 17 17 C 1.54022 * 110.05515 * 297.82921 * 15 13 3 18 18 C 1.54309 * 106.57700 * 240.34125 * 17 15 13 19 19 C 1.55000 * 104.26416 * 23.49206 * 18 17 15 20 20 C 1.53649 * 110.06006 * 180.75684 * 15 13 3 21 21 O 1.43062 * 110.65410 * 337.33984 * 20 15 13 22 22 C 1.44954 * 104.60960 * 213.72077 * 21 20 15 23 23 C 1.54976 * 101.82399 * 35.40267 * 22 21 20 24 24 O 1.42685 * 110.85401 * 215.47823 * 20 15 13 25 25 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47084 * 299.99548 * 1 2 3 27 27 H 1.08996 * 109.47579 * 59.99762 * 1 2 3 28 28 H 1.09003 * 109.46439 * 240.00469 * 2 1 3 29 29 H 1.08995 * 109.47110 * 120.00844 * 2 1 3 30 30 H 1.09001 * 109.47068 * 149.99942 * 4 3 2 31 31 H 1.08993 * 109.47068 * 29.99396 * 4 3 2 32 32 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 33 33 H 1.08994 * 110.03570 * 359.62663 * 17 15 13 34 34 H 1.09001 * 110.02903 * 121.01600 * 17 15 13 35 35 H 1.09002 * 110.47570 * 142.18581 * 18 17 15 36 36 H 1.08998 * 110.47833 * 264.66619 * 18 17 15 37 37 H 1.09005 * 110.76059 * 80.97948 * 19 18 17 38 38 H 1.09000 * 110.76229 * 204.18079 * 19 18 17 39 39 H 1.08994 * 110.95727 * 277.26923 * 22 21 20 40 40 H 1.08998 * 110.98956 * 153.54720 * 22 21 20 41 41 H 1.08997 * 110.68781 * 206.42691 * 23 22 21 42 42 H 1.08994 * 110.68790 * 83.22745 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0068 2.7821 1.7039 6 1 0.1157 2.7247 1.0963 7 6 0.9951 3.5046 2.8782 8 7 2.0799 3.5741 3.6183 9 14 -0.5617 4.3846 3.4179 10 1 -0.3142 5.0847 4.7040 11 1 -1.6541 3.3943 3.5951 12 1 -0.9545 5.3750 2.3834 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1671 15 6 1.9913 1.3064 -2.4723 16 1 0.9480 0.9971 -2.5342 17 6 2.9141 0.0791 -2.5923 18 6 3.7816 0.3018 -3.8488 19 6 3.7781 1.8390 -4.0479 20 6 2.3381 2.2300 -3.6502 21 8 2.2893 3.6018 -3.2472 22 6 1.8207 4.3112 -4.4212 23 6 0.8270 3.2914 -5.0329 24 8 1.4438 2.0188 -4.7417 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.0645 2.7984 1.1385 31 1 2.5506 1.3450 2.0283 32 1 2.8883 3.1168 3.3383 33 1 3.5485 0.0012 -1.7094 34 1 2.3181 -0.8266 -2.7047 35 1 4.7965 -0.0584 -3.6803 36 1 3.3393 -0.1972 -4.7110 37 1 4.5040 2.3156 -3.3890 38 1 3.9772 2.0943 -5.0887 39 1 2.6425 4.5147 -5.1077 40 1 1.3107 5.2334 -4.1424 41 1 0.7377 3.4388 -6.1092 42 1 -0.1476 3.3665 -4.5506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807014925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:35 Heat of formation + Delta-G solvation = -119.719787 kcal Electronic energy + Delta-G solvation = -24454.279316 eV Core-core repulsion = 21013.702005 eV Total energy + Delta-G solvation = -3440.577311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.94744 -38.91875 -36.08469 -35.33723 -34.72505 -32.94063 -29.96108 -29.76905 -29.42423 -26.69114 -26.24606 -23.26746 -23.09142 -22.71778 -20.86902 -20.60867 -18.53960 -17.23987 -16.90386 -16.51869 -16.06150 -15.37023 -15.26648 -15.11265 -14.16550 -14.01773 -13.72857 -13.67368 -13.22508 -13.06809 -12.73627 -12.67158 -12.26210 -12.19857 -12.08377 -11.94407 -11.61071 -11.33734 -11.25561 -11.16534 -10.98136 -10.79333 -10.63483 -10.58589 -10.22363 -10.06207 -10.02276 -9.39186 -9.02290 -8.65591 -8.32382 -7.51572 -6.31520 -4.02509 3.40655 3.44696 3.49249 3.51143 3.66871 3.92528 4.17428 4.47417 4.56985 4.59233 4.65788 4.92321 4.97622 5.13604 5.20680 5.34659 5.42978 5.44518 5.45071 5.51020 5.54024 5.66159 5.74450 5.79397 5.82887 5.86188 5.88228 5.96393 6.03198 6.14471 6.16851 6.28836 6.34586 6.78801 6.90132 7.20461 7.33208 7.54731 8.12530 8.41191 8.52169 8.85246 9.18876 9.66607 11.05270 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019754 B = 0.005815 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.090874 B = 4813.848980 C = 5364.124752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.596 5.596 4 C 0.239 3.761 5 C -0.599 4.599 6 H 0.051 0.949 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 1.069 2.931 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.514 3.486 14 O -0.505 6.505 15 C -0.120 4.120 16 H 0.103 0.897 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.141 4.141 20 C 0.265 3.735 21 O -0.307 6.307 22 C 0.000 4.000 23 C 0.019 3.981 24 O -0.374 6.374 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 -7.274 -17.226 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 N -0.329 5.329 4 C 0.119 3.881 5 C -0.638 4.638 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.548 5.548 9 Si 0.898 3.102 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.299 3.701 14 O -0.380 6.380 15 C -0.142 4.142 16 H 0.121 0.879 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.179 4.179 20 C 0.186 3.814 21 O -0.226 6.226 22 C -0.077 4.077 23 C -0.057 4.057 24 O -0.295 6.295 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.635 -5.799 -15.878 16.915 hybrid contribution 0.317 -0.932 -1.326 1.651 sum -0.318 -6.731 -17.204 18.476 Atomic orbital electron populations 1.22217 0.96491 1.00759 1.03278 1.21625 0.94679 0.83960 1.02049 1.47998 1.64647 1.13177 1.07116 1.19289 0.97779 0.92044 0.79011 1.22258 0.97790 1.34436 1.09269 0.93021 1.25763 1.03269 0.96083 0.93474 1.70796 1.02093 1.42267 1.39682 0.83541 0.74213 0.76256 0.76234 1.20722 1.21531 1.21509 1.19835 0.79281 0.86738 0.84246 1.90731 1.44489 1.16615 1.86154 1.22264 1.02345 0.96092 0.93469 0.87919 1.22205 0.97569 0.96354 0.98963 1.22284 1.00004 0.95451 0.97831 1.23026 0.95946 0.96745 1.02182 1.23423 0.89629 0.83905 0.84401 1.89879 1.86683 1.15629 1.30382 1.24459 0.96590 0.97632 0.89017 1.24243 0.97386 0.82601 1.01464 1.88782 1.58574 1.30774 1.51382 0.92877 0.90639 0.93415 0.90959 0.91096 0.95040 0.96350 0.92293 0.90591 0.90475 0.91091 0.90999 0.89226 0.90775 0.91266 0.87699 0.88601 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.24 37.16 0.38 -2.39 16 2 C 0.10 1.71 5.69 -4.04 -0.02 1.68 16 3 N -0.60 -13.05 2.43 -175.06 -0.43 -13.48 16 4 C 0.24 6.34 4.52 -5.19 -0.02 6.31 16 5 C -0.60 -17.37 8.92 -34.44 -0.31 -17.68 16 6 H 0.05 1.52 7.42 -52.48 -0.39 1.13 16 7 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 8 N -0.91 -28.26 13.65 55.43 0.76 -27.51 16 9 Si 1.07 26.13 29.90 -169.99 -5.08 21.05 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.51 11.24 6.75 -10.99 -0.07 11.16 16 14 O -0.51 -13.22 13.32 -19.44 -0.26 -13.48 16 15 C -0.12 -2.01 2.30 -90.90 -0.21 -2.22 16 16 H 0.10 1.68 7.12 -51.93 -0.37 1.31 16 17 C -0.11 -1.49 4.51 -25.51 -0.11 -1.61 16 18 C -0.12 -1.38 6.83 -24.99 -0.17 -1.55 16 19 C -0.14 -1.96 6.32 -24.93 -0.16 -2.12 16 20 C 0.26 4.29 1.04 -25.65 -0.03 4.27 16 21 O -0.31 -5.80 7.80 -67.91 -0.53 -6.33 16 22 C 0.00 0.00 7.96 38.20 0.30 0.30 16 23 C 0.02 0.23 8.08 38.20 0.31 0.54 16 24 O -0.37 -5.46 10.92 -59.03 -0.64 -6.10 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.47 7.26 -51.92 -0.38 1.09 16 27 H 0.05 0.78 7.23 -51.93 -0.38 0.40 16 28 H 0.07 1.00 4.10 -51.93 -0.21 0.79 16 29 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 30 H 0.03 0.94 7.29 -51.93 -0.38 0.56 16 31 H 0.02 0.49 7.76 -51.93 -0.40 0.09 16 32 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 33 H 0.08 1.06 6.98 -51.93 -0.36 0.69 16 34 H 0.08 0.84 7.57 -51.93 -0.39 0.45 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 329.06 15.07 4.96 4.96 Total: -1.00 -35.32 329.06 -8.00 -43.33 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.57 Total: 0.42 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.21 Total: -2.86 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.33 Total: -40.98 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.43 Total: -25.91 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.08 Total: 21.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.32 -8.00 -43.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807014925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.392 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds