Wall clock time and date at job start Tue Mar 31 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47205 * 2 1 4 4 N 1.46492 * 109.47502 * 240.00095 * 2 1 3 5 5 C 1.34784 * 120.00380 * 84.99734 * 4 2 1 6 6 O 1.21287 * 119.99393 * 0.02562 * 5 4 2 7 7 C 1.50692 * 120.00253 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47115 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46894 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00411 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99303 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99460 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00596 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47114 * 89.99859 * 13 11 9 15 15 H 1.48494 * 109.47436 * 210.00009 * 13 11 9 16 16 H 1.48499 * 109.47093 * 330.00142 * 13 11 9 17 17 C 1.50704 * 109.47353 * 119.99566 * 2 1 3 18 18 O 1.20827 * 119.99988 * 120.00232 * 17 2 1 19 19 O 1.34222 * 120.00240 * 300.00810 * 17 2 1 20 20 C 1.45200 * 117.00452 * 179.97438 * 19 17 2 21 21 C 1.55238 * 110.57916 * 264.87397 * 20 19 17 22 22 C 1.54894 * 102.58338 * 203.33328 * 21 20 19 23 23 C 1.54266 * 104.31305 * 37.93170 * 22 21 20 24 24 C 1.53869 * 106.60031 * 336.32486 * 23 22 21 25 25 H 1.08994 * 109.47458 * 299.99845 * 1 2 3 26 26 H 1.08996 * 109.46986 * 60.00272 * 1 2 3 27 27 H 1.09004 * 109.46713 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00193 * 264.99343 * 4 2 1 29 29 H 1.09004 * 109.47187 * 299.99505 * 7 5 4 30 30 H 1.08999 * 109.47274 * 59.99517 * 7 5 4 31 31 H 1.09004 * 109.46568 * 299.99736 * 8 7 5 32 32 H 1.08993 * 109.46975 * 59.99861 * 8 7 5 33 33 H 0.97006 * 120.00130 * 180.02562 * 12 11 9 34 34 H 1.09006 * 110.43332 * 27.45610 * 20 19 17 35 35 H 1.08996 * 110.89448 * 85.04892 * 21 20 19 36 36 H 1.08993 * 110.76342 * 321.56558 * 21 20 19 37 37 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 38 38 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 39 39 H 1.09001 * 110.03084 * 95.60669 * 23 22 21 40 40 H 1.08996 * 110.03108 * 216.98559 * 23 22 21 41 41 H 1.08999 * 110.04012 * 119.28327 * 24 23 22 42 42 H 1.09006 * 110.02998 * 240.67078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6490 -0.7287 -3.5877 8 6 2.7012 0.2546 -4.7587 9 6 3.2025 -0.4562 -5.9895 10 1 3.4586 -1.5042 -5.9412 11 6 3.3340 0.2317 -7.1771 12 7 3.7720 -0.3884 -8.2510 13 14 2.8902 2.0442 -7.2609 14 1 4.0878 2.8623 -6.9418 15 1 2.4150 2.3748 -8.6284 16 1 1.8152 2.3365 -6.2791 17 6 2.0324 -0.7103 1.2305 18 8 2.7271 -1.6927 1.1197 19 8 1.7080 -0.2518 2.4496 20 6 2.2268 -0.9862 3.5897 21 6 1.1807 -2.0143 4.0983 22 6 1.6076 -2.2293 5.5717 23 6 2.0489 -0.8303 6.0489 24 6 2.4425 -0.0399 4.7888 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2492 -1.6317 -1.1525 29 1 3.6482 -1.1211 -3.3985 30 1 1.9762 -1.5506 -3.8325 31 1 1.7021 0.6474 -4.9480 32 1 3.3742 1.0761 -4.5136 33 1 3.8649 0.0956 -9.0866 34 1 3.1582 -1.4880 3.3274 35 1 1.2470 -2.9463 3.5371 36 1 0.1740 -1.6002 4.0443 37 1 2.4390 -2.9319 5.6294 38 1 0.7656 -2.5866 6.1645 39 1 1.2244 -0.3327 6.5594 40 1 2.9045 -0.9170 6.7187 41 1 1.8091 0.8414 4.6876 42 1 3.4896 0.2578 4.8467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812527311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:55 Heat of formation + Delta-G solvation = -147.438441 kcal Electronic energy + Delta-G solvation = -22008.912442 eV Core-core repulsion = 18567.133160 eV Total energy + Delta-G solvation = -3441.779282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08136 -39.41793 -38.18523 -36.15179 -35.09864 -33.48546 -31.64011 -30.56383 -29.24939 -28.51827 -26.23356 -24.88683 -22.12212 -21.14332 -20.75070 -20.52949 -19.93596 -18.14280 -17.46182 -16.83572 -16.43503 -16.06294 -15.75920 -15.56364 -15.03010 -14.57868 -14.05495 -13.90399 -13.65407 -13.35221 -13.20999 -12.90090 -12.64290 -12.54620 -12.39836 -12.25869 -11.81530 -11.73953 -11.62795 -11.41694 -11.19804 -10.98001 -10.95825 -10.75021 -10.55420 -10.17287 -10.05149 -9.78832 -9.33768 -9.17473 -9.11408 -8.49949 -6.01980 -4.00831 1.87879 2.15145 3.02881 3.38217 3.38950 3.45261 3.55542 4.01989 4.06318 4.19854 4.45320 4.51587 4.82496 4.82643 4.91454 4.93385 4.94631 5.07026 5.12294 5.31847 5.33322 5.37146 5.42254 5.48176 5.56137 5.57858 5.65857 5.67666 5.81710 5.97172 6.07891 6.09825 6.19206 6.41661 6.68505 7.35772 7.41955 7.43156 7.66913 7.79224 8.47817 8.57303 9.01211 9.60752 11.10833 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.045842 B = 0.002684 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.640919 B =10430.317800 C =10634.599173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.124 0.876 4 N -0.730 5.730 5 C 0.517 3.483 6 O -0.537 6.537 7 C -0.120 4.120 8 C 0.002 3.998 9 C -0.525 4.525 10 H 0.073 0.927 11 C 0.068 3.932 12 N -0.903 5.903 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.261 1.261 17 C 0.462 3.538 18 O -0.502 6.502 19 O -0.344 6.344 20 C 0.079 3.921 21 C -0.140 4.140 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.123 4.123 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.409 0.591 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.295 -2.191 29.680 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.142 0.858 4 N -0.387 5.387 5 C 0.306 3.694 6 O -0.413 6.413 7 C -0.160 4.160 8 C -0.036 4.036 9 C -0.563 4.563 10 H 0.091 0.909 11 C -0.133 4.133 12 N -0.542 5.542 13 Si 0.705 3.295 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.185 1.185 17 C 0.304 3.696 18 O -0.388 6.388 19 O -0.260 6.260 20 C 0.024 3.976 21 C -0.177 4.177 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.161 4.161 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.245 0.755 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.238 -1.603 29.453 30.149 hybrid contribution 0.104 0.300 -0.062 0.324 sum -6.134 -1.303 29.391 30.052 Atomic orbital electron populations 1.22126 0.92002 1.03174 1.04272 1.20296 0.96159 0.98000 0.80988 0.85816 1.46114 1.69479 1.14839 1.08247 1.21629 0.75987 0.87493 0.84255 1.90660 1.49316 1.16347 1.84934 1.21684 1.01929 1.00691 0.91721 1.19384 0.97814 0.94382 0.92042 1.21110 1.44179 0.98342 0.92664 0.90886 1.24980 0.94438 0.98339 0.95547 1.69916 1.46775 1.36740 1.00788 0.86782 0.79767 0.85678 0.77244 1.20263 1.21466 1.18509 1.23858 0.77290 0.83046 0.85414 1.90659 1.35411 1.25877 1.86898 1.86551 1.69385 1.55416 1.14644 1.23843 0.98038 0.92617 0.83056 1.22956 0.99411 0.98918 0.96451 1.22280 1.01450 0.97193 0.95178 1.22088 1.01541 0.95502 0.96813 1.22224 1.02605 0.98889 0.92348 0.90464 0.90030 0.91896 0.75488 0.89331 0.89299 0.95735 0.96221 0.92721 0.88888 0.90698 0.90129 0.91150 0.90884 0.91136 0.91214 0.89954 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.42 37.16 0.35 -1.29 16 2 C 0.15 1.88 3.09 -69.09 -0.21 1.66 16 3 H 0.12 1.60 7.58 -51.93 -0.39 1.20 16 4 N -0.73 -10.31 4.95 -54.94 -0.27 -10.59 16 5 C 0.52 9.31 7.79 -10.99 -0.09 9.23 16 6 O -0.54 -11.39 15.65 5.55 0.09 -11.30 16 7 C -0.12 -2.34 5.64 -27.89 -0.16 -2.50 16 8 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 9 C -0.53 -15.06 9.66 -34.44 -0.33 -15.40 16 10 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 11 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 13 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.26 -6.63 6.54 56.52 0.37 -6.26 16 17 C 0.46 5.53 7.32 36.01 0.26 5.79 16 18 O -0.50 -7.01 15.05 -18.75 -0.28 -7.29 16 19 O -0.34 -3.58 9.86 -39.24 -0.39 -3.96 16 20 C 0.08 0.69 3.23 -24.88 -0.08 0.61 16 21 C -0.14 -1.02 6.66 -24.55 -0.16 -1.18 16 22 C -0.12 -0.68 6.82 -25.07 -0.17 -0.85 16 23 C -0.12 -0.63 6.80 -25.62 -0.17 -0.81 16 24 C -0.12 -0.82 6.57 -25.62 -0.17 -0.99 16 25 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.41 5.23 7.79 -40.82 -0.32 4.91 16 29 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 32 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.09 0.91 7.14 -51.93 -0.37 0.54 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 348.71 15.07 5.26 5.26 Total: -1.00 -33.77 348.71 -7.54 -41.30 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.92 Total: -0.15 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.12 Total: -3.84 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.50 Total: -37.92 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.58 Total: -22.56 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.77 -7.54 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812527311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.134 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds