Wall clock time and date at job start Tue Mar 31 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47205 * 2 1 4 4 N 1.46492 * 109.47502 * 240.00095 * 2 1 3 5 5 C 1.34784 * 120.00380 * 84.99734 * 4 2 1 6 6 O 1.21287 * 119.99393 * 0.02562 * 5 4 2 7 7 C 1.50692 * 120.00253 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47115 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46894 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00411 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99303 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99460 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 120.00596 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47114 * 89.99859 * 13 11 9 15 15 H 1.48494 * 109.47436 * 210.00009 * 13 11 9 16 16 H 1.48499 * 109.47093 * 330.00142 * 13 11 9 17 17 C 1.50704 * 109.47353 * 119.99566 * 2 1 3 18 18 O 1.20827 * 119.99988 * 120.00232 * 17 2 1 19 19 O 1.34222 * 120.00240 * 300.00810 * 17 2 1 20 20 C 1.45200 * 117.00452 * 179.97438 * 19 17 2 21 21 C 1.55238 * 110.57916 * 264.87397 * 20 19 17 22 22 C 1.54894 * 102.58338 * 203.33328 * 21 20 19 23 23 C 1.54266 * 104.31305 * 37.93170 * 22 21 20 24 24 C 1.53869 * 106.60031 * 336.32486 * 23 22 21 25 25 H 1.08994 * 109.47458 * 299.99845 * 1 2 3 26 26 H 1.08996 * 109.46986 * 60.00272 * 1 2 3 27 27 H 1.09004 * 109.46713 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00193 * 264.99343 * 4 2 1 29 29 H 1.09004 * 109.47187 * 299.99505 * 7 5 4 30 30 H 1.08999 * 109.47274 * 59.99517 * 7 5 4 31 31 H 1.09004 * 109.46568 * 299.99736 * 8 7 5 32 32 H 1.08993 * 109.46975 * 59.99861 * 8 7 5 33 33 H 0.97006 * 120.00130 * 180.02562 * 12 11 9 34 34 H 1.09006 * 110.43332 * 27.45610 * 20 19 17 35 35 H 1.08996 * 110.89448 * 85.04892 * 21 20 19 36 36 H 1.08993 * 110.76342 * 321.56558 * 21 20 19 37 37 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 38 38 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 39 39 H 1.09001 * 110.03084 * 95.60669 * 23 22 21 40 40 H 1.08996 * 110.03108 * 216.98559 * 23 22 21 41 41 H 1.08999 * 110.04012 * 119.28327 * 24 23 22 42 42 H 1.09006 * 110.02998 * 240.67078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6490 -0.7287 -3.5877 8 6 2.7012 0.2546 -4.7587 9 6 3.2025 -0.4562 -5.9895 10 1 3.4586 -1.5042 -5.9412 11 6 3.3340 0.2317 -7.1771 12 7 3.7720 -0.3884 -8.2510 13 14 2.8902 2.0442 -7.2609 14 1 4.0878 2.8623 -6.9418 15 1 2.4150 2.3748 -8.6284 16 1 1.8152 2.3365 -6.2791 17 6 2.0324 -0.7103 1.2305 18 8 2.7271 -1.6927 1.1197 19 8 1.7080 -0.2518 2.4496 20 6 2.2268 -0.9862 3.5897 21 6 1.1807 -2.0143 4.0983 22 6 1.6076 -2.2293 5.5717 23 6 2.0489 -0.8303 6.0489 24 6 2.4425 -0.0399 4.7888 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.2492 -1.6317 -1.1525 29 1 3.6482 -1.1211 -3.3985 30 1 1.9762 -1.5506 -3.8325 31 1 1.7021 0.6474 -4.9480 32 1 3.3742 1.0761 -4.5136 33 1 3.8649 0.0956 -9.0866 34 1 3.1582 -1.4880 3.3274 35 1 1.2470 -2.9463 3.5371 36 1 0.1740 -1.6002 4.0443 37 1 2.4390 -2.9319 5.6294 38 1 0.7656 -2.5866 6.1645 39 1 1.2244 -0.3327 6.5594 40 1 2.9045 -0.9170 6.7187 41 1 1.8091 0.8414 4.6876 42 1 3.4896 0.2578 4.8467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812527311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:54 Heat of formation + Delta-G solvation = -168.621057 kcal Electronic energy + Delta-G solvation = -22009.830989 eV Core-core repulsion = 18567.133160 eV Total energy + Delta-G solvation = -3442.697829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03623 -40.72057 -38.95803 -36.94437 -36.31846 -35.50880 -33.46665 -31.92262 -29.75509 -29.12712 -28.03060 -25.92938 -23.57824 -22.18371 -21.49327 -21.35644 -21.26694 -19.48075 -18.80941 -18.23367 -17.58379 -17.17973 -16.57587 -16.51725 -16.37687 -16.17275 -15.45967 -15.02911 -14.68242 -14.56351 -14.39446 -14.10736 -13.98455 -13.43368 -13.40919 -13.33597 -13.16728 -12.90771 -12.74992 -12.18319 -12.12823 -12.10853 -11.96403 -11.82163 -11.75631 -11.62834 -11.44256 -11.39679 -11.27827 -10.88969 -10.77337 -10.35125 -8.30371 -6.33723 0.92267 1.20752 1.35370 1.36993 1.51943 1.61064 2.21535 2.36368 3.05292 3.34110 3.48030 3.53763 3.84038 3.89504 3.92443 4.05083 4.24171 4.38221 4.42557 4.45237 4.48184 4.48952 4.62584 4.67337 4.71696 4.82962 4.90243 4.98406 5.00487 5.13760 5.15938 5.18633 5.22595 5.37590 5.39973 5.43127 5.45216 5.61596 6.23747 6.39264 6.51068 6.72800 7.15682 7.31494 8.85369 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.045842 B = 0.002684 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.640919 B =10430.317800 C =10634.599173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.149 3.851 3 H 0.120 0.880 4 N -0.714 5.714 5 C 0.526 3.474 6 O -0.571 6.571 7 C -0.117 4.117 8 C 0.006 3.994 9 C -0.530 4.530 10 H 0.048 0.952 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.941 3.059 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.257 1.257 17 C 0.471 3.529 18 O -0.524 6.524 19 O -0.340 6.340 20 C 0.069 3.931 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.121 4.121 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.417 0.583 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.267 0.733 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.193 -1.605 32.010 32.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.138 0.862 4 N -0.370 5.370 5 C 0.315 3.685 6 O -0.450 6.450 7 C -0.156 4.156 8 C -0.032 4.032 9 C -0.568 4.568 10 H 0.066 0.934 11 C -0.187 4.187 12 N -0.586 5.586 13 Si 0.766 3.234 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.181 1.181 17 C 0.313 3.687 18 O -0.413 6.413 19 O -0.256 6.256 20 C 0.015 3.985 21 C -0.176 4.176 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.159 4.159 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.255 0.745 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.144 -1.044 31.833 32.641 hybrid contribution 0.408 0.024 -0.711 0.820 sum -6.736 -1.021 31.122 31.859 Atomic orbital electron populations 1.22084 0.90194 1.03945 1.04636 1.20438 0.97500 0.97475 0.80295 0.86203 1.45857 1.68184 1.15086 1.07907 1.21143 0.75787 0.86802 0.84787 1.90651 1.51168 1.17638 1.85547 1.21509 1.03370 0.99872 0.90883 1.19233 0.96559 0.94933 0.92507 1.21435 1.43518 0.97577 0.94295 0.93376 1.25850 0.94573 1.02918 0.95324 1.70035 1.48305 1.38669 1.01541 0.85780 0.79740 0.80285 0.77627 1.19447 1.20467 1.18113 1.23658 0.76720 0.82467 0.85806 1.90657 1.36490 1.26904 1.87253 1.86540 1.69121 1.55469 1.14466 1.24123 0.97933 0.93544 0.82939 1.22962 0.99165 0.97975 0.97541 1.22293 1.01998 0.97566 0.93958 1.22100 1.02354 0.94956 0.96162 1.22265 1.02952 0.98674 0.91991 0.88265 0.91460 0.90926 0.74507 0.88169 0.87690 0.96629 0.97062 0.92398 0.90286 0.91650 0.89723 0.91078 0.89570 0.90104 0.90196 0.89815 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.42 71.98 0.68 -2.18 16 2 C 0.15 3.46 3.09 44.25 0.14 3.60 16 3 H 0.12 2.96 7.58 -2.39 -0.02 2.94 16 4 N -0.71 -19.24 4.95 -446.10 -2.21 -21.45 16 5 C 0.53 18.39 7.79 87.65 0.68 19.07 16 6 O -0.57 -23.81 15.65 -3.05 -0.05 -23.86 16 7 C -0.12 -4.43 5.64 29.85 0.17 -4.27 16 8 C 0.01 0.28 3.33 29.85 0.10 0.38 16 9 C -0.53 -30.73 9.66 25.60 0.25 -30.49 16 10 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 11 C 0.01 0.65 5.47 84.65 0.46 1.11 16 12 N -0.94 -59.54 13.96 21.45 0.30 -59.25 16 13 Si 0.94 46.62 27.47 68.60 1.88 48.50 16 14 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 16 H -0.26 -12.49 6.54 99.48 0.65 -11.83 16 17 C 0.47 10.67 7.32 71.24 0.52 11.19 16 18 O -0.52 -14.16 15.05 21.96 0.33 -13.83 16 19 O -0.34 -6.58 9.86 -51.34 -0.51 -7.09 16 20 C 0.07 1.12 3.23 31.79 0.10 1.22 16 21 C -0.14 -1.82 6.66 32.01 0.21 -1.60 16 22 C -0.12 -1.08 6.82 31.67 0.22 -0.86 16 23 C -0.12 -0.93 6.80 31.32 0.21 -0.72 16 24 C -0.12 -1.39 6.57 31.32 0.21 -1.19 16 25 H 0.10 1.45 8.11 -2.39 -0.02 1.43 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.42 10.03 7.79 -92.71 -0.72 9.31 16 29 H 0.10 3.56 8.14 -2.38 -0.02 3.54 16 30 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 31 H 0.02 0.79 7.15 -2.38 -0.02 0.77 16 32 H 0.01 0.56 7.53 -2.39 -0.02 0.54 16 33 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 34 H 0.08 1.51 7.14 -2.38 -0.02 1.50 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.08 0.95 8.07 -2.39 -0.02 0.93 16 42 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -72.20 348.71 3.92 -68.27 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.23 Total: 13.43 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 3.95 Total: -4.73 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.91 Total: -80.69 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.22 Total: -44.78 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.88 Total: 48.50 kcal Total: -72.20 3.92 -68.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812527311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.348 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds