Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47035 * 2 1 4 4 N 1.46508 * 109.46738 * 119.99806 * 2 1 3 5 5 C 1.45754 * 117.94295 * 120.00655 * 4 2 1 6 6 C 1.52918 * 110.48491 * 160.92512 * 5 4 2 7 7 C 1.53345 * 108.67777 * 50.74559 * 6 5 4 8 8 C 1.53076 * 108.42724 * 292.47127 * 7 6 5 9 9 H 1.09004 * 109.39849 * 288.77287 * 8 7 6 10 10 O 1.45199 * 109.39947 * 169.02757 * 8 7 6 11 11 C 1.34227 * 116.99579 * 150.00439 * 10 8 7 12 12 O 1.20830 * 120.00494 * 359.97438 * 11 10 8 13 13 C 1.50702 * 120.00191 * 180.02562 * 11 10 8 14 14 C 1.52994 * 109.47445 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47135 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99782 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99891 * 179.97438 * 15 14 13 18 18 N 1.31507 * 119.99960 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99636 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47025 * 60.00583 * 19 17 15 21 21 H 1.48501 * 109.46722 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47460 * 300.00082 * 19 17 15 23 23 C 1.33348 * 117.94251 * 299.99592 * 4 2 1 24 24 O 1.21276 * 118.25190 * 2.23027 * 23 4 2 25 25 H 1.09000 * 109.47020 * 60.00670 * 1 2 3 26 26 H 1.09011 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47429 * 300.00078 * 1 2 3 28 28 H 1.09000 * 109.47502 * 239.99511 * 2 1 3 29 29 H 1.08997 * 109.47185 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47373 * 299.99491 * 3 2 1 31 31 H 1.09000 * 109.47374 * 59.99433 * 3 2 1 32 32 H 1.08996 * 109.30278 * 40.61058 * 5 4 2 33 33 H 1.08999 * 109.29682 * 281.22965 * 5 4 2 34 34 H 1.09003 * 109.60380 * 290.99232 * 6 5 4 35 35 H 1.08997 * 109.74402 * 170.58766 * 6 5 4 36 36 H 1.09000 * 109.67410 * 172.73883 * 7 6 5 37 37 H 1.08995 * 109.67470 * 52.20525 * 7 6 5 38 38 H 1.09002 * 109.46826 * 299.99643 * 13 11 10 39 39 H 1.09007 * 109.47113 * 59.99044 * 13 11 10 40 40 H 1.09002 * 109.47128 * 299.99839 * 14 13 11 41 41 H 1.08998 * 109.46977 * 59.99971 * 14 13 11 42 42 H 0.97007 * 120.00198 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8530 -1.8709 1.0106 6 6 3.6412 -2.1749 2.2853 7 6 2.6683 -2.1982 3.4704 8 6 2.1399 -0.7785 3.6907 9 1 2.9359 -0.1551 4.0982 10 8 1.0315 -0.8165 4.6278 11 6 0.8475 0.2672 5.3982 12 8 1.5885 1.2159 5.2934 13 6 -0.2824 0.3003 6.3948 14 6 -0.2683 1.6377 7.1377 15 6 -1.3987 1.6710 8.1339 16 1 -2.0607 0.8228 8.2279 17 6 -1.5870 2.7838 8.9259 18 7 -0.7806 3.8163 8.8117 19 14 -2.9877 2.8246 10.1611 20 1 -2.8219 1.7155 11.1344 21 1 -2.9740 4.1228 10.8821 22 1 -4.2810 2.6685 9.4483 23 6 1.6712 -0.1997 2.3866 24 8 0.9378 0.7656 2.4177 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.5487 -1.6948 0.1902 33 1 2.2207 -2.7244 0.7659 34 1 4.3924 -1.4011 2.4441 35 1 4.1294 -3.1451 2.1938 36 1 3.1885 -2.5391 4.3656 37 1 1.8378 -2.8688 3.2503 38 1 -1.2317 0.1850 5.8716 39 1 -0.1604 -0.5135 7.1096 40 1 0.6810 1.7526 7.6609 41 1 -0.3902 2.4516 6.4231 42 1 -0.9129 4.5990 9.3692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = -131.715828 kcal Electronic energy + Delta-G solvation = -23125.314434 eV Core-core repulsion = 19684.216935 eV Total energy + Delta-G solvation = -3441.097499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14489 -39.56071 -36.68424 -36.40131 -34.78334 -33.51116 -31.31237 -30.94359 -29.38683 -27.23812 -26.07170 -24.47697 -23.57484 -22.07219 -21.29127 -19.79722 -18.76574 -17.56448 -17.18363 -16.52027 -16.16171 -15.62895 -15.40232 -15.07064 -14.48600 -14.42828 -14.15372 -13.97215 -13.75215 -13.24626 -13.04101 -12.68061 -12.40381 -12.21279 -12.12949 -11.89417 -11.80531 -11.61992 -11.37191 -11.18131 -11.08875 -11.00464 -10.91119 -10.81814 -10.61585 -9.97747 -9.83193 -9.48603 -9.24383 -9.12865 -8.84788 -8.31879 -5.95709 -4.00515 2.36626 2.68688 3.01377 3.26634 3.36742 3.41073 3.43608 4.26507 4.35506 4.42787 4.47836 4.53495 4.82156 4.94429 4.96676 5.06106 5.08071 5.19058 5.35403 5.39416 5.41112 5.57008 5.59238 5.61460 5.63071 5.73091 5.82334 5.88242 6.15423 6.19391 6.26577 6.30266 6.52656 6.69053 6.99777 7.31423 7.72551 7.81708 8.04696 8.12462 8.32612 8.48986 9.06378 9.62966 11.15337 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.003613 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.359101 B = 7748.356395 C = 8253.669852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.141 3.859 3 C -0.172 4.172 4 N -0.602 5.602 5 C 0.112 3.888 6 C -0.133 4.133 7 C -0.119 4.119 8 C 0.075 3.925 9 H 0.112 0.888 10 O -0.345 6.345 11 C 0.459 3.541 12 O -0.493 6.493 13 C -0.099 4.099 14 C 0.034 3.966 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.504 3.496 24 O -0.514 6.514 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.368 -15.085 -18.800 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.039 3.961 3 C -0.230 4.230 4 N -0.338 5.338 5 C -0.011 4.011 6 C -0.171 4.171 7 C -0.156 4.156 8 C 0.016 3.984 9 H 0.129 0.871 10 O -0.263 6.263 11 C 0.302 3.698 12 O -0.377 6.377 13 C -0.137 4.137 14 C -0.003 4.003 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.291 3.709 24 O -0.389 6.389 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.265 -14.092 -18.723 25.199 hybrid contribution -0.527 0.100 0.507 0.738 sum 8.739 -13.993 -18.216 24.576 Atomic orbital electron populations 1.22253 0.94583 1.02088 1.04109 1.21062 0.95139 0.93523 0.86411 1.22226 1.00610 0.96108 1.04057 1.47490 1.51457 1.29007 1.05853 1.21453 0.93543 0.87629 0.98467 1.21870 0.98030 1.03769 0.93398 1.21741 0.99711 0.94574 0.99596 1.22372 0.90239 0.98752 0.87051 0.87074 1.86694 1.48665 1.43584 1.47360 1.24777 0.86184 0.79354 0.79462 1.90625 1.45462 1.35240 1.66407 1.21749 0.93015 1.04599 0.94346 1.19013 0.97863 0.88826 0.94644 1.21125 1.13622 1.01697 1.20204 0.92381 1.25014 0.96396 0.95549 0.97329 1.69989 1.37508 1.05500 1.39788 0.86604 0.82582 0.77198 0.81281 1.20182 1.21271 1.20172 1.20329 0.81290 0.84194 0.85136 1.90703 1.35029 1.26251 1.86926 0.91995 0.93006 0.89485 0.89911 0.93011 0.91845 0.89777 0.90525 0.91488 0.90558 0.88764 0.89548 0.89757 0.88994 0.89063 0.95626 0.95460 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.08 37.16 0.34 -1.64 16 2 C 0.14 1.47 3.21 -67.93 -0.22 1.25 16 3 C -0.17 -1.96 9.08 37.15 0.34 -1.62 16 4 N -0.60 -6.68 2.79 -167.38 -0.47 -7.15 16 5 C 0.11 0.76 6.25 -4.49 -0.03 0.74 16 6 C -0.13 -0.84 6.02 -26.59 -0.16 -1.00 16 7 C -0.12 -1.09 5.69 -26.51 -0.15 -1.24 16 8 C 0.07 1.09 2.69 -28.09 -0.08 1.01 16 9 H 0.11 1.72 7.15 -51.93 -0.37 1.35 16 10 O -0.35 -6.16 9.77 -44.99 -0.44 -6.60 16 11 C 0.46 9.84 7.40 36.01 0.27 10.11 16 12 O -0.49 -12.09 15.00 -18.99 -0.28 -12.37 16 13 C -0.10 -2.18 5.75 -27.88 -0.16 -2.34 16 14 C 0.03 0.93 4.26 -27.88 -0.12 0.81 16 15 C -0.53 -15.25 9.11 -34.44 -0.31 -15.57 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 19 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.50 7.71 6.64 -11.87 -0.08 7.63 16 24 O -0.51 -10.05 11.54 -11.13 -0.13 -10.17 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.09 1.33 5.84 -51.93 -0.30 1.03 16 28 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.29 6.00 -51.93 -0.31 0.98 16 32 H 0.08 0.37 8.03 -51.93 -0.42 -0.04 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 38 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.03 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -35.84 340.48 -7.77 -43.61 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.84 Total: -2.16 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.46 Total: -0.23 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.27 Total: -34.13 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.85 Total: -29.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.84 -7.77 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.101 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds