Wall clock time and date at job start Tue Mar 31 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47035 * 2 1 4 4 N 1.46508 * 109.46738 * 119.99806 * 2 1 3 5 5 C 1.45754 * 117.94295 * 120.00655 * 4 2 1 6 6 C 1.52918 * 110.48491 * 160.92512 * 5 4 2 7 7 C 1.53345 * 108.67777 * 50.74559 * 6 5 4 8 8 C 1.53076 * 108.42724 * 292.47127 * 7 6 5 9 9 H 1.09004 * 109.39849 * 288.77287 * 8 7 6 10 10 O 1.45199 * 109.39947 * 169.02757 * 8 7 6 11 11 C 1.34227 * 116.99579 * 150.00439 * 10 8 7 12 12 O 1.20830 * 120.00494 * 359.97438 * 11 10 8 13 13 C 1.50702 * 120.00191 * 180.02562 * 11 10 8 14 14 C 1.52994 * 109.47445 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47135 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99782 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99891 * 179.97438 * 15 14 13 18 18 N 1.31507 * 119.99960 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99636 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47025 * 60.00583 * 19 17 15 21 21 H 1.48501 * 109.46722 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47460 * 300.00082 * 19 17 15 23 23 C 1.33348 * 117.94251 * 299.99592 * 4 2 1 24 24 O 1.21276 * 118.25190 * 2.23027 * 23 4 2 25 25 H 1.09000 * 109.47020 * 60.00670 * 1 2 3 26 26 H 1.09011 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47429 * 300.00078 * 1 2 3 28 28 H 1.09000 * 109.47502 * 239.99511 * 2 1 3 29 29 H 1.08997 * 109.47185 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47373 * 299.99491 * 3 2 1 31 31 H 1.09000 * 109.47374 * 59.99433 * 3 2 1 32 32 H 1.08996 * 109.30278 * 40.61058 * 5 4 2 33 33 H 1.08999 * 109.29682 * 281.22965 * 5 4 2 34 34 H 1.09003 * 109.60380 * 290.99232 * 6 5 4 35 35 H 1.08997 * 109.74402 * 170.58766 * 6 5 4 36 36 H 1.09000 * 109.67410 * 172.73883 * 7 6 5 37 37 H 1.08995 * 109.67470 * 52.20525 * 7 6 5 38 38 H 1.09002 * 109.46826 * 299.99643 * 13 11 10 39 39 H 1.09007 * 109.47113 * 59.99044 * 13 11 10 40 40 H 1.09002 * 109.47128 * 299.99839 * 14 13 11 41 41 H 1.08998 * 109.46977 * 59.99971 * 14 13 11 42 42 H 0.97007 * 120.00198 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8530 -1.8709 1.0106 6 6 3.6412 -2.1749 2.2853 7 6 2.6683 -2.1982 3.4704 8 6 2.1399 -0.7785 3.6907 9 1 2.9359 -0.1551 4.0982 10 8 1.0315 -0.8165 4.6278 11 6 0.8475 0.2672 5.3982 12 8 1.5885 1.2159 5.2934 13 6 -0.2824 0.3003 6.3948 14 6 -0.2683 1.6377 7.1377 15 6 -1.3987 1.6710 8.1339 16 1 -2.0607 0.8228 8.2279 17 6 -1.5870 2.7838 8.9259 18 7 -0.7806 3.8163 8.8117 19 14 -2.9877 2.8246 10.1611 20 1 -2.8219 1.7155 11.1344 21 1 -2.9740 4.1228 10.8821 22 1 -4.2810 2.6685 9.4483 23 6 1.6712 -0.1997 2.3866 24 8 0.9378 0.7656 2.4177 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.5487 -1.6948 0.1902 33 1 2.2207 -2.7244 0.7659 34 1 4.3924 -1.4011 2.4441 35 1 4.1294 -3.1451 2.1938 36 1 3.1885 -2.5391 4.3656 37 1 1.8378 -2.8688 3.2503 38 1 -1.2317 0.1850 5.8716 39 1 -0.1604 -0.5135 7.1096 40 1 0.6810 1.7526 7.6609 41 1 -0.3902 2.4516 6.4231 42 1 -0.9129 4.5990 9.3692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:14 Heat of formation + Delta-G solvation = -154.776155 kcal Electronic energy + Delta-G solvation = -23126.314405 eV Core-core repulsion = 19684.216935 eV Total energy + Delta-G solvation = -3442.097469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31533 -41.03089 -37.93250 -37.60687 -35.81924 -35.67613 -33.20400 -32.01681 -30.36736 -28.15699 -28.05980 -25.52252 -24.64521 -23.83528 -22.12312 -21.53607 -19.76861 -19.23678 -18.47023 -18.11725 -17.49256 -16.90478 -16.80020 -16.51546 -16.22794 -15.54706 -15.17503 -14.83886 -14.76290 -14.59214 -14.32644 -14.23251 -14.02726 -13.37155 -13.30528 -13.05933 -12.89416 -12.79143 -12.69665 -12.56497 -12.50466 -12.32581 -12.20498 -12.03317 -11.87551 -11.76109 -11.74462 -11.45698 -11.28231 -10.59186 -10.39048 -9.74465 -8.21191 -6.36189 1.09011 1.26755 1.41850 1.47028 1.54716 1.79369 2.00545 2.42486 3.12037 3.32415 3.56151 3.63134 3.80307 3.96453 3.97521 4.06601 4.20228 4.27014 4.39104 4.41017 4.44890 4.57871 4.69974 4.72502 4.79922 4.84439 4.86405 4.89786 4.97481 5.01218 5.19572 5.24651 5.32615 5.37240 5.43389 5.50607 5.63516 5.77497 6.10179 6.37440 6.74199 6.82695 7.06922 7.34108 8.91667 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.003613 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.359101 B = 7748.356395 C = 8253.669852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 C -0.169 4.169 4 N -0.591 5.591 5 C 0.100 3.900 6 C -0.126 4.126 7 C -0.111 4.111 8 C 0.063 3.937 9 H 0.093 0.907 10 O -0.338 6.338 11 C 0.465 3.535 12 O -0.535 6.535 13 C -0.091 4.091 14 C 0.041 3.959 15 C -0.547 4.547 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.937 5.937 19 Si 0.978 3.022 20 H -0.259 1.259 21 H -0.286 1.286 22 H -0.264 1.264 23 C 0.493 3.507 24 O -0.570 6.570 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.130 0.870 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.123 0.877 40 H -0.008 1.008 41 H -0.019 1.019 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.418 -18.550 -20.136 28.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.035 3.965 3 C -0.227 4.227 4 N -0.325 5.325 5 C -0.021 4.021 6 C -0.163 4.163 7 C -0.148 4.148 8 C 0.005 3.995 9 H 0.111 0.889 10 O -0.255 6.255 11 C 0.310 3.690 12 O -0.424 6.424 13 C -0.129 4.129 14 C 0.004 3.996 15 C -0.585 4.585 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.802 3.198 20 H -0.183 1.183 21 H -0.211 1.211 22 H -0.189 1.189 23 C 0.280 3.720 24 O -0.450 6.450 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.148 0.852 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.153 0.847 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.140 0.860 40 H 0.011 0.989 41 H 0.000 1.000 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.341 -17.642 -20.106 28.333 hybrid contribution -0.453 1.148 0.788 1.464 sum 8.888 -16.494 -19.318 26.912 Atomic orbital electron populations 1.22189 0.95698 1.02182 1.02653 1.21275 0.94381 0.93272 0.87525 1.22172 1.01092 0.96937 1.02515 1.47625 1.50656 1.29600 1.04580 1.21919 0.94041 0.86366 0.99784 1.21945 0.97022 1.05868 0.91488 1.21866 1.00646 0.90483 1.01826 1.22895 0.88384 1.02307 0.85923 0.88883 1.86616 1.50107 1.41333 1.47408 1.24545 0.85420 0.79501 0.79525 1.90609 1.47025 1.36928 1.67790 1.21509 0.94144 1.02163 0.95035 1.18770 0.96275 0.90673 0.93900 1.21606 1.14015 1.02571 1.20280 0.90328 1.26155 0.99485 0.94891 0.99713 1.70172 1.39908 1.06420 1.41148 0.85306 0.78608 0.77615 0.78314 1.18328 1.21142 1.18852 1.20526 0.81125 0.83782 0.86593 1.90706 1.37800 1.28662 1.87838 0.90299 0.92030 0.94079 0.85205 0.92067 0.90094 0.94580 0.87347 0.89161 0.91045 0.84692 0.88274 0.88881 0.87488 0.85950 0.98929 1.00022 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 9.08 71.98 0.65 -3.14 16 2 C 0.14 2.59 3.21 44.99 0.14 2.73 16 3 C -0.17 -3.84 9.08 71.98 0.65 -3.18 16 4 N -0.59 -12.09 2.79 -802.65 -2.24 -14.33 16 5 C 0.10 0.92 6.25 86.49 0.54 1.46 16 6 C -0.13 -1.09 6.02 30.68 0.18 -0.91 16 7 C -0.11 -1.78 5.69 30.74 0.17 -1.60 16 8 C 0.06 1.87 2.69 29.71 0.08 1.95 16 9 H 0.09 3.07 7.15 -2.38 -0.02 3.05 16 10 O -0.34 -12.33 9.77 -45.90 -0.45 -12.78 16 11 C 0.47 20.95 7.40 71.24 0.53 21.48 16 12 O -0.54 -28.32 15.00 22.18 0.33 -27.99 16 13 C -0.09 -4.10 5.75 29.85 0.17 -3.93 16 14 C 0.04 2.40 4.26 29.85 0.13 2.53 16 15 C -0.55 -32.15 9.11 25.60 0.23 -31.91 16 16 H 0.08 4.19 7.74 -2.91 -0.02 4.17 16 17 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 18 N -0.94 -60.59 13.29 21.45 0.28 -60.30 16 19 Si 0.98 45.18 29.54 68.60 2.03 47.21 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 23 C 0.49 15.45 6.64 87.72 0.58 16.03 16 24 O -0.57 -24.03 11.54 12.94 0.15 -23.88 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.04 1.33 5.84 -2.39 -0.01 1.32 16 28 H 0.13 1.30 7.79 -2.39 -0.02 1.29 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.04 1.19 6.00 -2.39 -0.01 1.17 16 32 H 0.11 0.43 8.03 -2.39 -0.02 0.41 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 35 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 38 H 0.11 4.48 8.14 -2.39 -0.02 4.46 16 39 H 0.12 4.71 8.14 -2.38 -0.02 4.69 16 40 H -0.01 -0.49 8.10 -2.39 -0.02 -0.51 16 41 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 42 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 Total: -1.00 -86.30 340.48 5.63 -80.67 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.99 Total: 9.72 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 4.54 Total: 1.69 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.95 Total: -74.63 kcal Atomic # 8 Polarization: -64.68 SS G_CDS: 0.03 Total: -64.65 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -86.30 5.63 -80.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.108 kcal (2) G-P(sol) polarization free energy of solvation -86.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds