Wall clock time and date at job start Tue Mar 31 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.58313 * 2 1 4 4 C 1.53188 * 109.58674 * 239.58206 * 2 1 3 5 5 C 1.53041 * 109.31582 * 185.57654 * 4 2 1 6 6 C 1.53043 * 109.53592 * 61.35646 * 5 4 2 7 7 C 1.53623 * 109.24556 * 298.51226 * 6 5 4 8 8 N 1.46924 * 109.58908 * 120.28306 * 2 1 3 9 9 C 1.34770 * 120.63047 * 353.37388 * 8 2 1 10 10 O 1.21276 * 120.00285 * 354.21192 * 9 8 2 11 11 C 1.50701 * 119.99902 * 174.20612 * 9 8 2 12 12 O 1.45196 * 109.47190 * 180.02562 * 11 9 8 13 13 C 1.34233 * 117.00374 * 180.02562 * 12 11 9 14 14 O 1.20829 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00255 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.46767 * 180.02562 * 15 13 12 17 17 C 1.50709 * 109.46982 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99577 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99995 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99996 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99729 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47353 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46791 * 119.99834 * 21 19 17 24 24 H 1.48500 * 109.46971 * 239.99308 * 21 19 17 25 25 H 1.09001 * 109.46914 * 305.51063 * 1 2 3 26 26 H 1.08997 * 109.47613 * 65.51075 * 1 2 3 27 27 H 1.08997 * 109.47038 * 185.51557 * 1 2 3 28 28 H 1.09003 * 109.49164 * 305.52282 * 4 2 1 29 29 H 1.08997 * 109.50181 * 65.61876 * 4 2 1 30 30 H 1.09000 * 109.46261 * 181.37766 * 5 4 2 31 31 H 1.08998 * 109.45878 * 301.35376 * 5 4 2 32 32 H 1.08996 * 109.49905 * 58.59130 * 6 5 4 33 33 H 1.09007 * 109.49344 * 178.68380 * 6 5 4 34 34 H 1.08998 * 109.73899 * 295.12167 * 7 6 5 35 35 H 1.09001 * 109.66222 * 174.54860 * 7 6 5 36 36 H 1.09000 * 109.47067 * 60.00105 * 11 9 8 37 37 H 1.09002 * 109.47316 * 300.00137 * 11 9 8 38 38 H 1.08990 * 109.47129 * 59.99886 * 15 13 12 39 39 H 1.08996 * 109.47007 * 299.99493 * 15 13 12 40 40 H 1.09005 * 109.47427 * 299.99374 * 16 15 13 41 41 H 1.09000 * 109.47727 * 59.99534 * 16 15 13 42 42 H 0.97010 * 120.00018 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7307 -1.2446 5 6 3.5675 -0.8492 -1.1693 6 6 3.9569 -1.6655 0.0654 7 6 3.4657 -0.9402 1.3274 8 7 2.0226 -0.6980 1.1953 9 6 1.1676 -1.1034 2.1549 10 8 -0.0053 -0.8021 2.0889 11 6 1.6689 -1.9313 3.3101 12 8 0.5641 -2.2390 4.2005 13 6 0.8442 -2.9750 5.2875 14 8 1.9751 -3.3501 5.4882 15 6 -0.2521 -3.3345 6.2572 16 6 0.3306 -4.1702 7.3986 17 6 -0.7655 -4.5291 8.3686 18 1 -1.7765 -4.1943 8.1891 19 6 -0.4775 -5.2841 9.4858 20 7 0.7536 -5.6914 9.7046 21 14 -1.8361 -5.7284 10.6884 22 1 -3.1215 -5.1527 10.2180 23 1 -1.9570 -7.2060 10.7747 24 1 -1.5095 -5.1794 12.0290 25 1 -0.3633 0.5969 0.8365 26 1 -0.3634 0.4260 -0.9352 27 1 -0.3633 -1.0229 0.0988 28 1 1.6030 -1.7267 -1.2892 29 1 1.7659 -0.1693 -2.1366 30 1 3.9378 -1.3472 -2.0654 31 1 4.0061 0.1462 -1.0994 32 1 3.4984 -2.6526 0.0084 33 1 5.0413 -1.7693 0.1056 34 1 3.9878 0.0108 1.4322 35 1 3.6534 -1.5610 2.2036 36 1 2.4299 -1.3722 3.8545 37 1 2.0999 -2.8586 2.9325 38 1 -1.0200 -3.9099 5.7403 39 1 -0.6919 -2.4232 6.6624 40 1 0.7708 -5.0815 6.9938 41 1 1.0984 -3.5944 7.9154 42 1 0.9564 -6.2223 10.4909 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:12 Heat of formation + Delta-G solvation = -126.174508 kcal Electronic energy + Delta-G solvation = -22333.384839 eV Core-core repulsion = 18892.527630 eV Total energy + Delta-G solvation = -3440.857209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87773 -39.83723 -37.63494 -36.05359 -33.60335 -33.50211 -32.99916 -31.18875 -28.93744 -27.54049 -25.83901 -24.88950 -22.79156 -22.00595 -21.25605 -19.86494 -19.29402 -17.55301 -16.96801 -16.70019 -16.43686 -16.04543 -15.41594 -15.17499 -14.81612 -14.53959 -14.45530 -14.17880 -13.85499 -13.55407 -13.08023 -12.77588 -12.49901 -12.32901 -12.24753 -12.16203 -12.00751 -11.41104 -11.38165 -11.20899 -11.11079 -10.98067 -10.97151 -10.61964 -10.54266 -10.04904 -9.98282 -9.60800 -9.22180 -9.15274 -8.88366 -8.37740 -6.01501 -4.06002 2.29912 2.38898 2.76730 3.26346 3.31647 3.39207 3.43584 4.18438 4.32188 4.41567 4.45187 4.49889 4.63536 4.85224 4.90388 5.00521 5.03178 5.07506 5.22321 5.29256 5.34239 5.41726 5.45542 5.52188 5.55340 5.61953 5.65105 5.83574 6.00935 6.10686 6.13791 6.21817 6.43757 6.58125 6.87946 7.07284 7.66802 7.72916 7.97040 7.97976 8.22062 8.38297 9.01211 9.58158 11.09576 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.040089 B = 0.002785 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.279221 B =10052.931015 C =10587.687698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.146 3.854 3 H 0.072 0.928 4 C -0.133 4.133 5 C -0.120 4.120 6 C -0.137 4.137 7 C 0.102 3.898 8 N -0.611 5.611 9 C 0.519 3.481 10 O -0.506 6.506 11 C 0.044 3.956 12 O -0.342 6.342 13 C 0.458 3.542 14 O -0.506 6.506 15 C -0.101 4.101 16 C 0.033 3.967 17 C -0.527 4.527 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.516 11.654 -23.102 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.044 3.956 3 H 0.090 0.910 4 C -0.171 4.171 5 C -0.158 4.158 6 C -0.175 4.175 7 C -0.021 4.021 8 N -0.348 5.348 9 C 0.307 3.693 10 O -0.380 6.380 11 C -0.034 4.034 12 O -0.259 6.259 13 C 0.302 3.698 14 O -0.393 6.393 15 C -0.139 4.139 16 C -0.004 4.004 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.723 3.277 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.328 11.607 -22.957 26.491 hybrid contribution -0.213 -0.364 0.618 0.748 sum 6.115 11.243 -22.339 25.745 Atomic orbital electron populations 1.22238 0.92403 1.04015 1.01282 1.21289 0.95997 0.94933 0.83389 0.91014 1.22034 0.95955 1.01618 0.97481 1.21524 0.95749 1.00503 0.98019 1.22011 1.01463 0.99620 0.94422 1.21943 0.80070 1.00957 0.99129 1.48076 1.07198 1.59051 1.20518 1.20157 0.86258 0.80058 0.82856 1.90785 1.16826 1.54802 1.75636 1.22633 0.89786 1.00391 0.90570 1.86660 1.38263 1.66679 1.34284 1.24951 0.91558 0.73692 0.79578 1.90633 1.23771 1.50911 1.73979 1.21789 0.94693 1.02882 0.94538 1.19039 0.96441 0.94678 0.90268 1.21199 0.94833 1.33461 1.07031 0.92188 1.25021 0.95554 0.95831 0.97961 1.70004 1.18438 1.36569 1.27848 0.86481 0.82094 0.78152 0.80941 1.19612 1.20969 1.20973 0.90061 0.93645 0.91562 0.91317 0.90649 0.91513 0.91690 0.91175 0.90390 0.90748 0.89388 0.88671 0.88618 0.88727 0.88724 0.95551 0.95547 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 7.61 37.16 0.28 -1.21 16 2 C 0.15 1.27 3.49 -67.60 -0.24 1.04 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -0.89 5.37 -26.61 -0.14 -1.03 16 5 C -0.12 -0.66 5.88 -26.69 -0.16 -0.82 16 6 C -0.14 -0.81 6.10 -26.39 -0.16 -0.97 16 7 C 0.10 0.72 6.38 -3.48 -0.02 0.69 16 8 N -0.61 -6.02 2.97 -164.96 -0.49 -6.50 16 9 C 0.52 6.89 7.58 -10.99 -0.08 6.81 16 10 O -0.51 -8.31 12.07 -14.10 -0.17 -8.48 16 11 C 0.04 0.60 4.30 36.01 0.15 0.76 16 12 O -0.34 -6.08 9.75 -45.91 -0.45 -6.53 16 13 C 0.46 9.17 7.96 36.01 0.29 9.45 16 14 O -0.51 -11.24 15.73 -18.75 -0.29 -11.54 16 15 C -0.10 -2.12 5.75 -27.88 -0.16 -2.28 16 16 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 17 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 21 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.08 1.03 6.54 -51.93 -0.34 0.69 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.83 6.96 -51.93 -0.36 0.47 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.60 5.93 -51.93 -0.31 0.30 16 36 H 0.10 1.16 7.69 -51.93 -0.40 0.77 16 37 H 0.10 1.19 7.93 -51.93 -0.41 0.78 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 40 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -33.79 340.77 -8.17 -41.96 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.85 Total: -3.92 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.77 Total: -0.38 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.25 Total: -32.80 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.91 Total: -26.55 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.79 -8.17 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.212 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds