Wall clock time and date at job start Tue Mar 31 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.69483 * 2 1 4 4 C 1.53617 * 109.66450 * 120.58527 * 2 1 3 5 5 C 1.53045 * 109.24348 * 174.55292 * 4 2 1 6 6 C 1.53035 * 109.53564 * 298.51573 * 5 4 2 7 7 C 1.53187 * 109.31701 * 61.36235 * 6 5 4 8 8 N 1.46918 * 109.58678 * 239.64335 * 2 1 3 9 9 C 1.34779 * 120.63549 * 6.62178 * 8 2 1 10 10 O 1.21279 * 119.99376 * 354.64476 * 9 8 2 11 11 C 1.50696 * 120.00339 * 174.63781 * 9 8 2 12 12 O 1.45192 * 109.47070 * 180.02562 * 11 9 8 13 13 C 1.34231 * 117.00239 * 180.02562 * 12 11 9 14 14 O 1.20826 * 119.99502 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00500 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.47091 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46759 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00430 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99590 * 179.72131 * 17 16 15 20 20 N 1.31512 * 120.00201 * 0.28047 * 19 17 16 21 21 Si 1.86805 * 119.99682 * 180.27516 * 19 17 16 22 22 H 1.48501 * 109.46970 * 90.00522 * 21 19 17 23 23 H 1.48506 * 109.47077 * 210.00117 * 21 19 17 24 24 H 1.48496 * 109.47383 * 330.00244 * 21 19 17 25 25 H 1.08997 * 109.46592 * 176.12939 * 1 2 3 26 26 H 1.08999 * 109.47537 * 296.12644 * 1 2 3 27 27 H 1.08995 * 109.47173 * 56.13123 * 1 2 3 28 28 H 1.08999 * 109.63437 * 54.56512 * 4 2 1 29 29 H 1.09006 * 109.43722 * 294.41939 * 4 2 1 30 30 H 1.08995 * 109.46322 * 178.49577 * 5 4 2 31 31 H 1.09003 * 109.44412 * 58.52505 * 5 4 2 32 32 H 1.09001 * 109.49886 * 301.41148 * 6 5 4 33 33 H 1.09005 * 109.52839 * 181.33235 * 6 5 4 34 34 H 1.09005 * 109.59240 * 185.58072 * 7 6 5 35 35 H 1.08995 * 109.58948 * 65.15081 * 7 6 5 36 36 H 1.09000 * 109.47069 * 59.99858 * 11 9 8 37 37 H 1.08996 * 109.47178 * 300.00358 * 11 9 8 38 38 H 1.09004 * 109.46716 * 59.99634 * 15 13 12 39 39 H 1.09001 * 109.46979 * 300.00100 * 15 13 12 40 40 H 1.08990 * 109.47180 * 60.00433 * 16 15 13 41 41 H 1.08995 * 109.47298 * 299.99723 * 16 15 13 42 42 H 0.97000 * 119.99692 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0470 -0.7360 1.2453 5 6 3.5712 -0.8495 1.1677 6 6 3.9616 -1.6625 -0.0687 7 6 3.4658 -0.9419 -1.3262 8 7 2.0226 -0.6995 -1.1944 9 6 1.1675 -1.1063 -2.1535 10 8 -0.0281 -0.9835 -1.9917 11 6 1.6971 -1.7136 -3.4270 12 8 0.5866 -2.0666 -4.2932 13 6 0.8897 -2.6237 -5.4762 14 8 2.0447 -2.8096 -5.7781 15 6 -0.2106 -3.0171 -6.4279 16 6 0.4013 -3.6234 -7.6923 17 6 -0.6991 -4.0174 -8.6436 18 1 -1.7315 -3.8515 -8.3737 19 6 -0.3874 -4.5839 -9.8614 20 7 0.8698 -4.7855 -10.1904 21 14 -1.7511 -5.0652 -11.0439 22 1 -2.0598 -3.9192 -11.9364 23 1 -1.3114 -6.2246 -11.8612 24 1 -2.9662 -5.4346 -10.2743 25 1 -0.3632 -1.0253 -0.0694 26 1 -0.3634 0.4525 0.9226 27 1 -0.3633 0.5727 -0.8532 28 1 1.6097 -1.7335 1.2890 29 1 1.7689 -0.1769 2.1387 30 1 3.9444 -1.3477 2.0625 31 1 4.0063 0.1476 1.0990 32 1 3.5063 -2.6513 -0.0126 33 1 5.0462 -1.7633 -0.1109 34 1 3.6533 -1.5637 -2.2017 35 1 3.9877 0.0090 -1.4323 36 1 2.2729 -2.6084 -3.1908 37 1 2.3381 -0.9926 -3.9342 38 1 -0.7936 -2.1352 -6.6936 39 1 -0.8593 -3.7510 -5.9497 40 1 0.9845 -4.5051 -7.4269 41 1 1.0497 -2.8892 -8.1703 42 1 1.0889 -5.1844 -11.0470 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:15 Heat of formation + Delta-G solvation = -125.200429 kcal Electronic energy + Delta-G solvation = -22320.656755 eV Core-core repulsion = 18879.841785 eV Total energy + Delta-G solvation = -3440.814970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87947 -39.83872 -37.62878 -36.05431 -33.60189 -33.49635 -33.00868 -31.18780 -28.94248 -27.54387 -25.83434 -24.87724 -22.79209 -21.99986 -21.26966 -19.86139 -19.30821 -17.54179 -16.95767 -16.66754 -16.44483 -16.01505 -15.43332 -15.22795 -14.88256 -14.53994 -14.46020 -14.11536 -13.82998 -13.52790 -13.05594 -12.76753 -12.53172 -12.33073 -12.25394 -12.22064 -11.98739 -11.43508 -11.36637 -11.21164 -11.08356 -10.97882 -10.95333 -10.63854 -10.53831 -10.04322 -9.98364 -9.60295 -9.20682 -9.15962 -8.86859 -8.37278 -6.01296 -4.05887 2.30490 2.38328 2.76788 3.26492 3.32695 3.38957 3.42633 4.18225 4.31992 4.41202 4.45263 4.51586 4.62747 4.85068 4.90052 5.02174 5.03158 5.06291 5.23162 5.29406 5.34334 5.41904 5.45528 5.52103 5.56464 5.62195 5.65226 5.84508 6.01406 6.10803 6.13784 6.21819 6.44824 6.58150 6.87975 7.07138 7.66642 7.73078 7.96972 7.98101 8.22147 8.38368 9.01123 9.58195 11.09766 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.040952 B = 0.002768 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.568882 B =10114.717237 C =10644.280239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.146 3.854 3 H 0.072 0.928 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.137 4.137 7 C 0.102 3.898 8 N -0.611 5.611 9 C 0.519 3.481 10 O -0.506 6.506 11 C 0.044 3.956 12 O -0.342 6.342 13 C 0.458 3.542 14 O -0.506 6.506 15 C -0.102 4.102 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 9.767 24.082 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.043 3.957 3 H 0.090 0.910 4 C -0.171 4.171 5 C -0.158 4.158 6 C -0.175 4.175 7 C -0.021 4.021 8 N -0.348 5.348 9 C 0.306 3.694 10 O -0.380 6.380 11 C -0.034 4.034 12 O -0.259 6.259 13 C 0.302 3.698 14 O -0.393 6.393 15 C -0.139 4.139 16 C -0.004 4.004 17 C -0.566 4.566 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.106 9.708 23.939 26.545 hybrid contribution -0.217 -0.288 -0.650 0.743 sum 5.889 9.419 23.290 25.804 Atomic orbital electron populations 1.22241 0.92309 1.04220 1.00897 1.21405 0.96033 0.94780 0.83435 0.90994 1.22108 0.95884 1.01597 0.97491 1.21524 0.95784 1.00504 0.97985 1.21928 1.01428 0.99668 0.94452 1.21849 0.80095 1.00983 0.99162 1.48065 1.07230 1.58965 1.20554 1.20166 0.86689 0.78377 0.84136 1.90800 1.15214 1.53447 1.78581 1.22636 0.89491 1.01563 0.89698 1.86658 1.36966 1.73261 1.29000 1.24948 0.92082 0.72988 0.79759 1.90632 1.22442 1.50931 1.75288 1.21792 0.94682 1.02655 0.94778 1.19029 0.96235 0.96569 0.88548 1.21162 0.92900 1.41174 1.01372 0.92242 1.25019 0.95520 0.95684 0.98114 1.69991 1.16866 1.43648 1.22365 0.86534 0.82060 0.78107 0.80940 1.20596 1.21196 1.19759 0.90786 0.93811 0.90836 0.91279 0.90717 0.91524 0.91690 0.91224 0.90346 0.89405 0.90822 0.88689 0.88590 0.88730 0.88725 0.95553 0.95554 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 7.60 37.16 0.28 -1.19 16 2 C 0.15 1.27 3.51 -67.38 -0.24 1.03 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -0.90 5.40 -26.39 -0.14 -1.04 16 5 C -0.12 -0.66 5.88 -26.69 -0.16 -0.82 16 6 C -0.14 -0.81 6.08 -26.62 -0.16 -0.97 16 7 C 0.10 0.72 6.33 -3.71 -0.02 0.69 16 8 N -0.61 -6.01 2.97 -164.97 -0.49 -6.49 16 9 C 0.52 6.88 7.68 -10.99 -0.08 6.79 16 10 O -0.51 -8.29 11.90 -14.10 -0.17 -8.45 16 11 C 0.04 0.60 4.35 36.00 0.16 0.76 16 12 O -0.34 -6.08 9.75 -45.91 -0.45 -6.53 16 13 C 0.46 9.17 7.96 36.00 0.29 9.45 16 14 O -0.51 -11.24 15.73 -18.75 -0.29 -11.54 16 15 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16 16 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 17 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 21 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.07 0.94 6.73 -51.93 -0.35 0.59 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.93 6.77 -51.93 -0.35 0.57 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.60 5.96 -51.93 -0.31 0.29 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 1.17 7.47 -51.93 -0.39 0.78 16 37 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 40 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -33.76 340.71 -8.17 -41.93 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.85 Total: -3.90 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -0.77 Total: -0.40 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.25 Total: -32.81 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.91 Total: -26.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.76 -8.17 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.269 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds