Wall clock time and date at job start Tue Mar 31 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47437 * 2 1 4 4 O 1.45204 * 109.46565 * 240.00401 * 2 1 3 5 5 C 1.34223 * 116.99995 * 90.00560 * 4 2 1 6 6 O 1.20822 * 120.00332 * 359.97438 * 5 4 2 7 7 C 1.50709 * 120.00118 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47243 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46963 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99917 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99917 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99690 * 180.02562 * 11 9 8 13 13 Si 1.86791 * 119.99917 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47419 * 90.00128 * 13 11 9 15 15 H 1.48500 * 109.47356 * 209.99663 * 13 11 9 16 16 H 1.48499 * 109.47679 * 330.00100 * 13 11 9 17 17 C 1.50698 * 109.47201 * 120.00636 * 2 1 3 18 18 O 1.21284 * 120.00109 * 119.99611 * 17 2 1 19 19 N 1.34774 * 119.99704 * 299.99599 * 17 2 1 20 20 C 1.46504 * 120.00191 * 179.97438 * 19 17 2 21 21 C 1.55238 * 110.58101 * 269.87786 * 20 19 17 22 22 C 1.54894 * 102.58338 * 203.33396 * 21 20 19 23 23 C 1.54266 * 104.31305 * 37.93170 * 22 21 20 24 24 C 1.53869 * 106.60031 * 336.32486 * 23 22 21 25 25 H 1.08998 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46957 * 300.00054 * 1 2 3 27 27 H 1.09000 * 109.47138 * 59.99601 * 1 2 3 28 28 H 1.08995 * 109.47027 * 299.99744 * 7 5 4 29 29 H 1.09003 * 109.46845 * 59.99833 * 7 5 4 30 30 H 1.08995 * 109.47405 * 300.00131 * 8 7 5 31 31 H 1.09003 * 109.46831 * 60.00442 * 8 7 5 32 32 H 0.97004 * 119.99556 * 180.02562 * 12 11 9 33 33 H 0.97000 * 120.00101 * 0.02562 * 19 17 2 34 34 H 1.09006 * 110.43286 * 32.46094 * 20 19 17 35 35 H 1.08996 * 110.89448 * 85.04960 * 21 20 19 36 36 H 1.08993 * 110.76342 * 321.56626 * 21 20 19 37 37 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 38 38 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 39 39 H 1.09001 * 110.03084 * 95.60669 * 23 22 21 40 40 H 1.08996 * 110.03108 * 216.98559 * 23 22 21 41 41 H 1.08999 * 110.04012 * 119.28327 * 24 23 22 42 42 H 1.09006 * 110.02998 * 240.67078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6844 -1.1857 5 6 2.2170 0.0641 -2.2811 6 8 1.9974 1.2518 -2.2505 7 6 2.7191 -0.5769 -3.5493 8 6 2.8631 0.4892 -4.6373 9 6 3.3658 -0.1516 -5.9052 10 1 3.5624 -1.2133 -5.9324 11 6 3.5746 0.6173 -7.0304 12 7 4.0128 0.0579 -8.1370 13 14 3.2337 2.4532 -6.9834 14 1 4.4629 3.1745 -6.5658 15 1 2.8235 2.9153 -8.3338 16 1 2.1439 2.7299 -6.0134 17 6 2.0323 -0.7105 1.2304 18 8 2.7296 -1.6967 1.1190 19 7 1.7068 -0.2501 2.4545 20 6 2.1946 -0.9411 3.6507 21 6 1.1879 -2.0350 4.0977 22 6 1.5197 -2.2048 5.6011 23 6 1.8270 -0.7736 6.0879 24 6 2.2561 0.0299 4.8478 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.6882 -1.0399 -3.3634 29 1 2.0102 -1.3370 -3.8775 30 1 1.8939 0.9520 -4.8231 31 1 3.5719 1.2496 -4.3092 32 1 4.1600 0.5989 -8.9286 33 1 1.1489 0.5384 2.5435 34 1 3.1752 -1.3790 3.4639 35 1 1.3594 -2.9656 3.5568 36 1 0.1615 -1.6930 3.9648 37 1 2.3913 -2.8467 5.7293 38 1 0.6634 -2.6143 6.1369 39 1 0.9349 -0.3299 6.5299 40 1 2.6352 -0.7934 6.8190 41 1 1.5723 0.8635 4.6879 42 1 3.2730 0.4008 4.9767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:05 Heat of formation + Delta-G solvation = -147.632345 kcal Electronic energy + Delta-G solvation = -22020.040543 eV Core-core repulsion = 18578.252853 eV Total energy + Delta-G solvation = -3441.787691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70284 -39.74455 -38.01130 -36.26053 -34.19505 -33.62903 -32.05056 -31.23366 -29.16495 -27.91635 -26.61167 -24.68891 -22.12974 -21.09277 -20.89521 -20.44360 -19.81561 -17.82869 -17.55062 -16.89939 -16.51788 -16.07902 -15.70813 -15.43143 -15.09338 -14.43741 -14.08836 -13.86162 -13.78763 -13.53317 -13.18979 -12.77850 -12.62674 -12.60130 -12.36526 -11.92722 -11.73371 -11.67016 -11.51521 -11.44436 -11.18612 -11.02575 -10.93362 -10.74344 -10.32714 -10.18029 -10.00285 -9.84311 -9.69153 -9.36055 -9.25183 -8.55160 -6.06340 -4.06159 2.34123 2.38266 2.64789 3.29223 3.34332 3.41199 3.49636 4.07982 4.20712 4.37253 4.46258 4.46447 4.67279 4.82557 4.96392 4.98555 5.03944 5.07085 5.09790 5.20777 5.28157 5.38287 5.45347 5.49216 5.50955 5.62825 5.73328 5.78552 5.84374 5.89884 6.01123 6.03584 6.19384 6.45081 6.72670 7.14096 7.23439 7.30940 7.71024 7.94505 8.14776 8.47942 8.96493 9.55151 11.06291 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.044923 B = 0.002706 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.134603 B =10345.231159 C =10536.876258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.065 3.935 3 H 0.109 0.891 4 O -0.334 6.334 5 C 0.459 3.541 6 O -0.511 6.511 7 C -0.095 4.095 8 C -0.001 4.001 9 C -0.527 4.527 10 H 0.076 0.924 11 C 0.070 3.930 12 N -0.900 5.900 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.520 3.480 18 O -0.513 6.513 19 N -0.723 5.723 20 C 0.139 3.861 21 C -0.136 4.136 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.131 4.131 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.026 0.974 31 H 0.021 0.979 32 H 0.264 0.736 33 H 0.400 0.600 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 -0.276 29.232 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.006 3.994 3 H 0.127 0.873 4 O -0.251 6.251 5 C 0.304 3.696 6 O -0.399 6.399 7 C -0.132 4.132 8 C -0.039 4.039 9 C -0.565 4.565 10 H 0.094 0.906 11 C -0.132 4.132 12 N -0.538 5.538 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C 0.304 3.696 18 O -0.386 6.386 19 N -0.377 5.377 20 C 0.035 3.965 21 C -0.175 4.175 22 C -0.162 4.162 23 C -0.160 4.160 24 C -0.169 4.169 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.235 0.765 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.703 -0.602 28.972 29.985 hybrid contribution -0.438 1.526 0.009 1.587 sum -8.141 0.923 28.981 30.117 Atomic orbital electron populations 1.22142 0.92135 1.03911 1.03909 1.22321 0.95827 0.97802 0.83467 0.87314 1.86731 1.77258 1.41793 1.19269 1.24918 0.73342 0.86275 0.85099 1.90601 1.48330 1.16987 1.83939 1.21572 1.02725 1.01411 0.87494 1.19488 0.97922 0.93726 0.92742 1.21034 1.44752 0.96952 0.93721 0.90587 1.24959 0.94318 0.98638 0.95242 1.69906 1.45852 1.36190 1.01894 0.86794 0.79580 0.85774 0.77372 1.20185 1.21333 1.18618 1.20285 0.80297 0.84788 0.84189 1.90749 1.36264 1.25217 1.86394 1.45952 1.54431 1.32344 1.05014 1.21965 0.98749 0.92537 0.83245 1.22965 0.99331 0.99369 0.95808 1.22315 1.01700 0.96765 0.95469 1.22084 1.01395 0.95436 0.97085 1.22407 1.02392 0.98101 0.94042 0.90869 0.90620 0.90335 0.88077 0.88105 0.95583 0.96051 0.92604 0.76480 0.88521 0.90822 0.91063 0.91274 0.91346 0.91546 0.91471 0.91109 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.44 37.16 0.35 -1.30 16 2 C 0.06 0.85 2.98 -27.88 -0.08 0.77 16 3 H 0.11 1.39 7.16 -51.93 -0.37 1.02 16 4 O -0.33 -5.71 9.41 -45.88 -0.43 -6.15 16 5 C 0.46 8.73 7.93 36.01 0.29 9.01 16 6 O -0.51 -10.59 15.20 -18.75 -0.28 -10.87 16 7 C -0.09 -1.90 5.75 -27.88 -0.16 -2.06 16 8 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 9 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 10 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 12 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 13 Si 0.88 22.18 27.47 -169.99 -4.67 17.52 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 17 C 0.52 6.68 7.23 -10.99 -0.08 6.60 16 18 O -0.51 -8.77 16.15 -14.11 -0.23 -8.99 16 19 N -0.72 -6.22 5.06 -52.01 -0.26 -6.48 16 20 C 0.14 1.12 3.22 -66.08 -0.21 0.91 16 21 C -0.14 -1.00 6.61 -24.55 -0.16 -1.17 16 22 C -0.12 -0.71 6.82 -25.07 -0.17 -0.88 16 23 C -0.12 -0.60 6.80 -25.62 -0.17 -0.77 16 24 C -0.13 -0.73 6.53 -25.62 -0.17 -0.90 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 29 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 30 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 31 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.40 2.27 7.79 -40.82 -0.32 1.95 16 34 H 0.10 0.98 7.55 -51.93 -0.39 0.59 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.32 7.73 -51.93 -0.40 -0.08 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -34.68 348.13 -7.83 -42.51 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.87 Total: -2.52 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.10 Total: -3.27 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.51 Total: -33.46 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.94 Total: -26.01 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.68 -7.83 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.126 kcal (2) G-P(sol) polarization free energy of solvation -34.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds