Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47437 * 2 1 4 4 O 1.45204 * 109.46565 * 240.00401 * 2 1 3 5 5 C 1.34223 * 116.99995 * 90.00560 * 4 2 1 6 6 O 1.20822 * 120.00332 * 359.97438 * 5 4 2 7 7 C 1.50709 * 120.00118 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47243 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.46963 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99917 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99917 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99690 * 180.02562 * 11 9 8 13 13 Si 1.86791 * 119.99917 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47419 * 90.00128 * 13 11 9 15 15 H 1.48500 * 109.47356 * 209.99663 * 13 11 9 16 16 H 1.48499 * 109.47679 * 330.00100 * 13 11 9 17 17 C 1.50698 * 109.47201 * 120.00636 * 2 1 3 18 18 O 1.21284 * 120.00109 * 119.99611 * 17 2 1 19 19 N 1.34774 * 119.99704 * 299.99599 * 17 2 1 20 20 C 1.46504 * 120.00191 * 179.97438 * 19 17 2 21 21 C 1.55238 * 110.58101 * 269.87786 * 20 19 17 22 22 C 1.54894 * 102.58338 * 203.33396 * 21 20 19 23 23 C 1.54266 * 104.31305 * 37.93170 * 22 21 20 24 24 C 1.53869 * 106.60031 * 336.32486 * 23 22 21 25 25 H 1.08998 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46957 * 300.00054 * 1 2 3 27 27 H 1.09000 * 109.47138 * 59.99601 * 1 2 3 28 28 H 1.08995 * 109.47027 * 299.99744 * 7 5 4 29 29 H 1.09003 * 109.46845 * 59.99833 * 7 5 4 30 30 H 1.08995 * 109.47405 * 300.00131 * 8 7 5 31 31 H 1.09003 * 109.46831 * 60.00442 * 8 7 5 32 32 H 0.97004 * 119.99556 * 180.02562 * 12 11 9 33 33 H 0.97000 * 120.00101 * 0.02562 * 19 17 2 34 34 H 1.09006 * 110.43286 * 32.46094 * 20 19 17 35 35 H 1.08996 * 110.89448 * 85.04960 * 21 20 19 36 36 H 1.08993 * 110.76342 * 321.56626 * 21 20 19 37 37 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 38 38 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 39 39 H 1.09001 * 110.03084 * 95.60669 * 23 22 21 40 40 H 1.08996 * 110.03108 * 216.98559 * 23 22 21 41 41 H 1.08999 * 110.04012 * 119.28327 * 24 23 22 42 42 H 1.09006 * 110.02998 * 240.67078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6844 -1.1857 5 6 2.2170 0.0641 -2.2811 6 8 1.9974 1.2518 -2.2505 7 6 2.7191 -0.5769 -3.5493 8 6 2.8631 0.4892 -4.6373 9 6 3.3658 -0.1516 -5.9052 10 1 3.5624 -1.2133 -5.9324 11 6 3.5746 0.6173 -7.0304 12 7 4.0128 0.0579 -8.1370 13 14 3.2337 2.4532 -6.9834 14 1 4.4629 3.1745 -6.5658 15 1 2.8235 2.9153 -8.3338 16 1 2.1439 2.7299 -6.0134 17 6 2.0323 -0.7105 1.2304 18 8 2.7296 -1.6967 1.1190 19 7 1.7068 -0.2501 2.4545 20 6 2.1946 -0.9411 3.6507 21 6 1.1879 -2.0350 4.0977 22 6 1.5197 -2.2048 5.6011 23 6 1.8270 -0.7736 6.0879 24 6 2.2561 0.0299 4.8478 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.6882 -1.0399 -3.3634 29 1 2.0102 -1.3370 -3.8775 30 1 1.8939 0.9520 -4.8231 31 1 3.5719 1.2496 -4.3092 32 1 4.1600 0.5989 -8.9286 33 1 1.1489 0.5384 2.5435 34 1 3.1752 -1.3790 3.4639 35 1 1.3594 -2.9656 3.5568 36 1 0.1615 -1.6930 3.9648 37 1 2.3913 -2.8467 5.7293 38 1 0.6634 -2.6143 6.1369 39 1 0.9349 -0.3299 6.5299 40 1 2.6352 -0.7934 6.8190 41 1 1.5723 0.8635 4.6879 42 1 3.2730 0.4008 4.9767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -169.384950 kcal Electronic energy + Delta-G solvation = -22020.983807 eV Core-core repulsion = 18578.252853 eV Total energy + Delta-G solvation = -3442.730954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.94270 -40.84517 -38.77781 -37.62653 -35.64912 -35.07831 -33.57102 -32.70852 -29.65251 -28.61360 -28.42182 -25.76585 -23.77248 -21.97606 -21.58762 -21.43728 -21.10201 -19.47664 -18.63453 -18.46988 -17.59861 -17.40543 -16.64073 -16.33276 -16.29104 -16.13343 -15.41916 -15.09380 -14.79975 -14.44381 -14.37260 -14.29478 -13.93172 -13.46301 -13.38293 -13.25718 -12.94746 -12.73842 -12.57659 -12.27840 -12.10421 -12.04833 -12.00531 -11.95577 -11.79468 -11.77631 -11.52861 -11.42366 -11.32399 -10.90385 -10.79011 -10.17068 -8.31662 -6.36579 1.10151 1.26775 1.35727 1.37110 1.38032 1.51045 2.23640 2.35064 3.03468 3.42325 3.61368 3.68519 3.69805 3.84126 3.86854 3.96857 4.27486 4.35564 4.45682 4.48530 4.51211 4.56044 4.58472 4.61429 4.75611 4.82397 4.89601 5.02676 5.06253 5.11293 5.20147 5.20992 5.27018 5.29539 5.35132 5.45886 5.51382 5.57571 6.20988 6.34937 6.65613 6.74221 7.05821 7.28344 8.84080 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.044923 B = 0.002706 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.134603 B =10345.231159 C =10536.876258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.056 3.944 3 H 0.116 0.884 4 O -0.343 6.343 5 C 0.472 3.528 6 O -0.530 6.530 7 C -0.093 4.093 8 C 0.005 3.995 9 C -0.534 4.534 10 H 0.048 0.952 11 C 0.012 3.988 12 N -0.943 5.943 13 Si 0.943 3.057 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.254 1.254 17 C 0.521 3.479 18 O -0.564 6.564 19 N -0.700 5.700 20 C 0.133 3.867 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.125 4.125 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.023 0.977 31 H 0.018 0.982 32 H 0.268 0.732 33 H 0.418 0.582 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.738 1.563 31.742 33.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.002 4.002 3 H 0.133 0.867 4 O -0.259 6.259 5 C 0.317 3.683 6 O -0.419 6.419 7 C -0.131 4.131 8 C -0.033 4.033 9 C -0.572 4.572 10 H 0.066 0.934 11 C -0.186 4.186 12 N -0.584 5.584 13 Si 0.767 3.233 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.177 1.177 17 C 0.306 3.694 18 O -0.442 6.442 19 N -0.354 5.354 20 C 0.028 3.972 21 C -0.173 4.173 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.163 4.163 25 H 0.090 0.910 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.257 0.743 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.265 1.254 31.539 32.895 hybrid contribution 0.039 0.857 -0.680 1.094 sum -9.226 2.111 30.859 32.278 Atomic orbital electron populations 1.22174 0.89466 1.04377 1.05484 1.22743 0.97917 0.97625 0.81885 0.86653 1.86668 1.77176 1.42104 1.19988 1.24354 0.72968 0.85719 0.85297 1.90586 1.49319 1.17574 1.84418 1.21359 1.03799 1.00413 0.87482 1.19314 0.97140 0.94486 0.92340 1.21339 1.44318 0.95993 0.95560 0.93417 1.25861 0.94224 1.03634 0.94872 1.70034 1.47349 1.38182 1.02790 0.85755 0.79842 0.79833 0.77860 1.19313 1.20432 1.17748 1.20308 0.79739 0.84129 0.85177 1.90735 1.38798 1.27549 1.87114 1.45812 1.53390 1.32332 1.03873 1.22077 0.97724 0.93647 0.83702 1.22931 0.99610 0.97984 0.96799 1.22314 1.01956 0.97576 0.94228 1.22086 1.02252 0.94500 0.96779 1.22391 1.03071 0.97977 0.92833 0.90957 0.86508 0.91263 0.87434 0.86841 0.95881 0.96408 0.92274 0.74334 0.91205 0.93190 0.89943 0.91862 0.90226 0.90126 0.90887 0.89242 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.44 71.98 0.68 -2.11 16 2 C 0.06 1.40 2.98 29.85 0.09 1.49 16 3 H 0.12 2.74 7.16 -2.39 -0.02 2.72 16 4 O -0.34 -11.52 9.41 -45.00 -0.42 -11.95 16 5 C 0.47 17.53 7.93 71.24 0.56 18.09 16 6 O -0.53 -21.25 15.20 21.98 0.33 -20.92 16 7 C -0.09 -3.71 5.75 29.85 0.17 -3.54 16 8 C 0.00 0.23 3.33 29.85 0.10 0.33 16 9 C -0.53 -30.81 9.66 25.60 0.25 -30.56 16 10 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 11 C 0.01 0.70 5.47 84.66 0.46 1.17 16 12 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 13 Si 0.94 45.52 27.47 68.60 1.88 47.41 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.25 -11.81 6.54 99.48 0.65 -11.16 16 17 C 0.52 12.94 7.23 87.66 0.63 13.57 16 18 O -0.56 -19.61 16.15 15.76 0.25 -19.36 16 19 N -0.70 -10.70 5.06 -436.87 -2.21 -12.91 16 20 C 0.13 1.98 3.22 46.19 0.15 2.13 16 21 C -0.13 -1.83 6.61 32.01 0.21 -1.62 16 22 C -0.12 -1.19 6.82 31.67 0.22 -0.97 16 23 C -0.12 -0.83 6.80 31.32 0.21 -0.62 16 24 C -0.12 -1.07 6.53 31.32 0.20 -0.86 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.12 1.07 7.56 -2.39 -0.02 1.05 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 29 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 30 H 0.02 1.13 7.16 -2.39 -0.02 1.11 16 31 H 0.02 0.87 7.53 -2.39 -0.02 0.85 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.42 3.33 7.79 -92.71 -0.72 2.61 16 34 H 0.07 1.45 7.55 -2.38 -0.02 1.43 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.09 0.46 7.73 -2.39 -0.02 0.44 16 42 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -76.08 348.13 4.31 -71.77 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.23 Total: 8.24 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 3.94 Total: -3.51 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.91 Total: -71.69 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: 0.16 Total: -52.22 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -76.08 4.31 -71.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.614 kcal (2) G-P(sol) polarization free energy of solvation -76.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds