Wall clock time and date at job start Tue Mar 31 2020 06:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 O 1.45204 * 109.46991 * 240.00002 * 2 1 3 5 5 C 1.34235 * 116.99572 * 90.00338 * 4 2 1 6 6 O 1.20826 * 120.00302 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99755 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47054 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47245 * 179.97438 * 8 7 5 10 10 H 1.08008 * 119.99848 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00131 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99840 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99930 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47113 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47410 * 120.00026 * 13 11 9 16 16 H 1.48496 * 109.46966 * 240.00170 * 13 11 9 17 17 C 1.50697 * 109.47167 * 120.00406 * 2 1 3 18 18 O 1.21279 * 120.00094 * 108.12518 * 17 2 1 19 19 N 1.34778 * 120.00217 * 288.12868 * 17 2 1 20 20 C 1.46918 * 120.63372 * 184.24597 * 19 17 2 21 21 C 1.53624 * 108.54492 * 126.36611 * 20 19 17 22 22 C 1.53041 * 109.24236 * 54.85614 * 21 20 19 23 23 C 1.53039 * 109.53677 * 298.51345 * 22 21 20 24 24 C 1.46926 * 120.62772 * 4.52321 * 19 17 2 25 25 H 1.09002 * 109.47327 * 57.22242 * 1 2 3 26 26 H 1.08998 * 109.47523 * 177.22354 * 1 2 3 27 27 H 1.09000 * 109.47060 * 297.22185 * 1 2 3 28 28 H 1.08996 * 109.46568 * 300.00064 * 7 5 4 29 29 H 1.08999 * 109.46832 * 59.99822 * 7 5 4 30 30 H 1.09003 * 109.47103 * 300.00270 * 8 7 5 31 31 H 1.09001 * 109.46808 * 59.99486 * 8 7 5 32 32 H 0.97001 * 119.99597 * 179.97438 * 12 11 9 33 33 H 1.09004 * 109.58995 * 246.19768 * 20 19 17 34 34 H 1.09000 * 109.58843 * 6.62012 * 20 19 17 35 35 H 1.08994 * 109.63505 * 294.86729 * 21 20 19 36 36 H 1.09005 * 109.43262 * 174.71905 * 21 20 19 37 37 H 1.09001 * 109.46124 * 178.48870 * 22 21 20 38 38 H 1.09007 * 109.46016 * 58.52816 * 22 21 20 39 39 H 1.08998 * 109.49788 * 301.41198 * 23 22 21 40 40 H 1.09004 * 109.49495 * 181.31547 * 23 22 21 41 41 H 1.09005 * 109.58927 * 353.37303 * 24 19 17 42 42 H 1.09001 * 109.58873 * 113.80092 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9974 1.2518 -2.2506 7 6 2.7182 -0.5771 -3.5496 8 6 2.8624 0.4890 -4.6374 9 6 3.3640 -0.1520 -5.9057 10 1 3.5600 -1.2138 -5.9331 11 6 3.5728 0.6169 -7.0309 12 7 3.3337 1.9096 -6.9976 13 14 4.1940 -0.1779 -8.6032 14 1 4.3831 -1.6338 -8.3805 15 1 3.2033 0.0327 -9.6892 16 1 5.4899 0.4357 -8.9894 17 6 2.0323 -0.7105 1.2304 18 8 2.5425 -1.8063 1.1320 19 7 1.9146 -0.1282 2.4401 20 6 2.4819 -0.7655 3.6362 21 6 3.3955 0.2474 4.3427 22 6 2.6051 1.5266 4.6277 23 6 2.1342 2.1419 3.3080 24 6 1.2111 1.1532 2.5888 25 1 -0.3634 0.5564 -0.8640 26 1 -0.3634 -1.0264 -0.0498 27 1 -0.3633 0.4701 0.9138 28 1 3.6870 -1.0408 -3.3640 29 1 2.0086 -1.3367 -3.8775 30 1 1.8933 0.9524 -4.8228 31 1 3.5717 1.2490 -4.3096 32 1 3.4809 2.4506 -7.7891 33 1 1.6769 -1.0656 4.3070 34 1 3.0618 -1.6408 3.3436 35 1 4.2470 0.4808 3.7036 36 1 3.7504 -0.1776 5.2817 37 1 3.2424 2.2379 5.1531 38 1 1.7399 1.2886 5.2465 39 1 2.9976 2.3574 2.6785 40 1 1.5914 3.0652 3.5103 41 1 0.9524 1.5444 1.6049 42 1 0.3046 1.0064 3.1760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:58 Heat of formation + Delta-G solvation = -138.818536 kcal Electronic energy + Delta-G solvation = -22565.673265 eV Core-core repulsion = 19124.267770 eV Total energy + Delta-G solvation = -3441.405495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.82299 -39.72185 -37.60345 -36.15260 -33.67897 -33.53889 -32.13660 -31.22348 -30.67268 -26.36467 -26.03199 -24.24923 -23.57062 -22.21105 -20.96922 -19.81912 -19.37909 -17.76623 -17.11073 -16.61994 -16.15164 -15.87461 -15.35210 -15.11902 -14.85769 -14.45983 -14.31839 -14.22844 -13.70628 -13.70468 -13.21435 -12.95074 -12.57683 -12.46962 -12.29010 -12.15559 -11.67338 -11.62781 -11.33577 -11.20051 -11.05843 -10.97085 -10.95691 -10.64022 -10.57837 -10.04913 -9.97324 -9.77010 -9.54041 -9.15761 -8.95141 -8.37540 -6.01328 -4.05769 2.29849 2.44205 2.77489 3.25154 3.31728 3.39255 3.43661 4.14428 4.34275 4.45244 4.47005 4.53327 4.68322 4.75860 4.85754 4.89500 5.05876 5.10153 5.17141 5.34406 5.34570 5.40824 5.45924 5.51376 5.59828 5.61493 5.67732 5.71279 5.92533 5.94124 6.14059 6.18482 6.23536 6.60112 6.89075 7.05340 7.66965 7.73205 7.94017 7.98179 8.22768 8.38846 9.01385 9.58352 11.09755 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033613 B = 0.002999 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.819702 B = 9332.666129 C = 9487.484065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 H 0.107 0.893 4 O -0.337 6.337 5 C 0.458 3.542 6 O -0.505 6.505 7 C -0.102 4.102 8 C 0.034 3.966 9 C -0.527 4.527 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.522 3.478 18 O -0.515 6.515 19 N -0.612 5.612 20 C 0.113 3.887 21 C -0.136 4.136 22 C -0.120 4.120 23 C -0.139 4.139 24 C 0.098 3.902 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 -1.014 24.785 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.007 3.993 3 H 0.124 0.876 4 O -0.254 6.254 5 C 0.302 3.698 6 O -0.392 6.392 7 C -0.140 4.140 8 C -0.004 4.004 9 C -0.565 4.565 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.309 3.691 18 O -0.389 6.389 19 N -0.349 5.349 20 C -0.009 4.009 21 C -0.174 4.174 22 C -0.157 4.157 23 C -0.177 4.177 24 C -0.025 4.025 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.071 -1.100 24.635 25.176 hybrid contribution 0.269 -0.043 -0.757 0.804 sum -4.802 -1.143 23.879 24.383 Atomic orbital electron populations 1.22253 0.92138 1.04225 1.04003 1.22288 0.95949 0.97580 0.83436 0.87572 1.86742 1.77375 1.41971 1.19323 1.24968 0.73518 0.86387 0.84968 1.90613 1.47917 1.16890 1.83775 1.21797 1.01967 1.02045 0.88171 1.19030 0.98561 0.92429 0.90344 1.21201 1.44858 0.94803 0.95665 0.92202 1.25018 0.95494 0.94825 0.99016 1.70002 1.48455 1.05018 1.29368 0.86482 0.78466 0.79555 0.83177 1.19612 1.20966 1.20978 1.20289 0.78867 0.86020 0.83915 1.90721 1.42972 1.19617 1.85621 1.48001 1.57013 1.22933 1.06919 1.21693 0.97157 0.96471 0.85617 1.22011 0.98650 0.95946 1.00821 1.21517 1.00139 0.97031 0.97035 1.21955 1.00307 0.98266 0.97169 1.21984 0.95027 0.83237 1.02217 0.90179 0.90773 0.90330 0.88748 0.88736 0.95536 0.95580 0.92926 0.91369 0.88836 0.91307 0.90612 0.91529 0.91700 0.91117 0.90331 0.89078 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.14 37.16 0.34 -1.60 16 2 C 0.07 0.96 2.13 -27.89 -0.06 0.91 16 3 H 0.11 1.51 6.27 -51.93 -0.33 1.19 16 4 O -0.34 -6.16 9.44 -45.83 -0.43 -6.59 16 5 C 0.46 9.27 7.93 36.01 0.29 9.55 16 6 O -0.51 -11.23 15.20 -18.75 -0.29 -11.51 16 7 C -0.10 -2.16 5.75 -27.88 -0.16 -2.32 16 8 C 0.03 0.89 4.26 -27.89 -0.12 0.77 16 9 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 10 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 13 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.52 7.47 7.05 -10.99 -0.08 7.39 16 18 O -0.52 -9.30 15.98 -13.80 -0.22 -9.52 16 19 N -0.61 -6.37 2.97 -172.51 -0.51 -6.88 16 20 C 0.11 0.99 6.45 -3.49 -0.02 0.97 16 21 C -0.14 -0.95 6.10 -26.39 -0.16 -1.11 16 22 C -0.12 -0.70 5.88 -26.69 -0.16 -0.86 16 23 C -0.14 -0.91 6.08 -26.61 -0.16 -1.07 16 24 C 0.10 0.73 5.21 -3.71 -0.02 0.71 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.65 5.89 -51.93 -0.31 0.34 16 28 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 29 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 30 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.99 7.03 -51.93 -0.37 0.63 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.69 4.69 -51.93 -0.24 0.45 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -34.47 342.11 -8.00 -42.47 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.70 Total: -3.14 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.72 Total: -0.27 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.22 Total: -33.18 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.94 Total: -27.63 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.47 -8.00 -42.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.347 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds