Wall clock time and date at job start Tue Mar 31 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 O 1.45204 * 109.46991 * 240.00002 * 2 1 3 5 5 C 1.34235 * 116.99572 * 90.00338 * 4 2 1 6 6 O 1.20826 * 120.00302 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99755 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47054 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47245 * 179.97438 * 8 7 5 10 10 H 1.08008 * 119.99848 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00131 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99840 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99930 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47113 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47410 * 120.00026 * 13 11 9 16 16 H 1.48496 * 109.46966 * 240.00170 * 13 11 9 17 17 C 1.50697 * 109.47167 * 120.00406 * 2 1 3 18 18 O 1.21279 * 120.00094 * 108.12518 * 17 2 1 19 19 N 1.34778 * 120.00217 * 288.12868 * 17 2 1 20 20 C 1.46918 * 120.63372 * 184.24597 * 19 17 2 21 21 C 1.53624 * 108.54492 * 126.36611 * 20 19 17 22 22 C 1.53041 * 109.24236 * 54.85614 * 21 20 19 23 23 C 1.53039 * 109.53677 * 298.51345 * 22 21 20 24 24 C 1.46926 * 120.62772 * 4.52321 * 19 17 2 25 25 H 1.09002 * 109.47327 * 57.22242 * 1 2 3 26 26 H 1.08998 * 109.47523 * 177.22354 * 1 2 3 27 27 H 1.09000 * 109.47060 * 297.22185 * 1 2 3 28 28 H 1.08996 * 109.46568 * 300.00064 * 7 5 4 29 29 H 1.08999 * 109.46832 * 59.99822 * 7 5 4 30 30 H 1.09003 * 109.47103 * 300.00270 * 8 7 5 31 31 H 1.09001 * 109.46808 * 59.99486 * 8 7 5 32 32 H 0.97001 * 119.99597 * 179.97438 * 12 11 9 33 33 H 1.09004 * 109.58995 * 246.19768 * 20 19 17 34 34 H 1.09000 * 109.58843 * 6.62012 * 20 19 17 35 35 H 1.08994 * 109.63505 * 294.86729 * 21 20 19 36 36 H 1.09005 * 109.43262 * 174.71905 * 21 20 19 37 37 H 1.09001 * 109.46124 * 178.48870 * 22 21 20 38 38 H 1.09007 * 109.46016 * 58.52816 * 22 21 20 39 39 H 1.08998 * 109.49788 * 301.41198 * 23 22 21 40 40 H 1.09004 * 109.49495 * 181.31547 * 23 22 21 41 41 H 1.09005 * 109.58927 * 353.37303 * 24 19 17 42 42 H 1.09001 * 109.58873 * 113.80092 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9974 1.2518 -2.2506 7 6 2.7182 -0.5771 -3.5496 8 6 2.8624 0.4890 -4.6374 9 6 3.3640 -0.1520 -5.9057 10 1 3.5600 -1.2138 -5.9331 11 6 3.5728 0.6169 -7.0309 12 7 3.3337 1.9096 -6.9976 13 14 4.1940 -0.1779 -8.6032 14 1 4.3831 -1.6338 -8.3805 15 1 3.2033 0.0327 -9.6892 16 1 5.4899 0.4357 -8.9894 17 6 2.0323 -0.7105 1.2304 18 8 2.5425 -1.8063 1.1320 19 7 1.9146 -0.1282 2.4401 20 6 2.4819 -0.7655 3.6362 21 6 3.3955 0.2474 4.3427 22 6 2.6051 1.5266 4.6277 23 6 2.1342 2.1419 3.3080 24 6 1.2111 1.1532 2.5888 25 1 -0.3634 0.5564 -0.8640 26 1 -0.3634 -1.0264 -0.0498 27 1 -0.3633 0.4701 0.9138 28 1 3.6870 -1.0408 -3.3640 29 1 2.0086 -1.3367 -3.8775 30 1 1.8933 0.9524 -4.8228 31 1 3.5717 1.2490 -4.3096 32 1 3.4809 2.4506 -7.7891 33 1 1.6769 -1.0656 4.3070 34 1 3.0618 -1.6408 3.3436 35 1 4.2470 0.4808 3.7036 36 1 3.7504 -0.1776 5.2817 37 1 3.2424 2.2379 5.1531 38 1 1.7399 1.2886 5.2465 39 1 2.9976 2.3574 2.6785 40 1 1.5914 3.0652 3.5103 41 1 0.9524 1.5444 1.6049 42 1 0.3046 1.0064 3.1760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:57 Heat of formation + Delta-G solvation = -159.289239 kcal Electronic energy + Delta-G solvation = -22566.560941 eV Core-core repulsion = 19124.267770 eV Total energy + Delta-G solvation = -3442.293171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05916 -41.00319 -38.54728 -37.63583 -35.67005 -34.54840 -33.30673 -32.75724 -31.61386 -28.13795 -27.08749 -25.35434 -24.40071 -23.76505 -21.96944 -21.35451 -20.24470 -19.30864 -18.36273 -18.24652 -17.50643 -17.39768 -16.49976 -16.48639 -16.19053 -15.56972 -15.24223 -15.14273 -14.81923 -14.61845 -14.33350 -14.28304 -14.06515 -13.75390 -13.50342 -13.26947 -13.18841 -12.87092 -12.73298 -12.50154 -12.28010 -12.06234 -11.99174 -11.86965 -11.76966 -11.61689 -11.53810 -11.50652 -11.28461 -10.82827 -10.58981 -9.78770 -8.20927 -6.34226 1.07856 1.20671 1.35521 1.43610 1.43860 1.57794 2.08908 2.43030 3.12914 3.16847 3.61769 3.73685 3.79904 3.85024 3.94133 3.96345 4.06816 4.31568 4.36253 4.40557 4.42226 4.52929 4.53180 4.60400 4.77418 4.85173 4.87585 4.89259 4.98145 5.02132 5.12696 5.21767 5.24791 5.42190 5.45265 5.47956 5.53775 5.79472 6.11444 6.13342 6.68901 6.83363 6.90873 7.35729 8.91815 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033613 B = 0.002999 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.819702 B = 9332.666129 C = 9487.484065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.058 3.942 3 H 0.107 0.893 4 O -0.343 6.343 5 C 0.467 3.533 6 O -0.532 6.532 7 C -0.096 4.096 8 C 0.041 3.959 9 C -0.545 4.545 10 H 0.074 0.926 11 C -0.002 4.002 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.256 1.256 15 H -0.278 1.278 16 H -0.280 1.280 17 C 0.520 3.480 18 O -0.564 6.564 19 N -0.602 5.602 20 C 0.107 3.893 21 C -0.132 4.132 22 C -0.116 4.116 23 C -0.138 4.138 24 C 0.089 3.911 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.116 0.884 30 H -0.004 1.004 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 -1.591 26.205 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.000 4.000 3 H 0.125 0.875 4 O -0.259 6.259 5 C 0.312 3.688 6 O -0.421 6.421 7 C -0.133 4.133 8 C 0.004 3.996 9 C -0.583 4.583 10 H 0.092 0.908 11 C -0.200 4.200 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.180 1.180 15 H -0.204 1.204 16 H -0.205 1.205 17 C 0.307 3.693 18 O -0.442 6.442 19 N -0.336 5.336 20 C -0.014 4.014 21 C -0.170 4.170 22 C -0.154 4.154 23 C -0.176 4.176 24 C -0.032 4.032 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.014 0.986 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.785 -1.667 26.115 26.800 hybrid contribution 0.460 0.195 -1.047 1.160 sum -5.325 -1.472 25.067 25.669 Atomic orbital electron populations 1.22266 0.89592 1.04530 1.05511 1.22680 0.98017 0.97227 0.82104 0.87499 1.86675 1.77249 1.42073 1.19931 1.24577 0.73011 0.85803 0.85379 1.90600 1.49192 1.17920 1.84359 1.21549 1.03629 1.00657 0.87446 1.18790 0.95771 0.92975 0.92053 1.21654 1.44662 0.95621 0.96349 0.90767 1.26061 0.95548 0.95313 1.03093 1.70151 1.49662 1.06818 1.30669 0.85276 0.77749 0.79137 0.78122 1.17998 1.20392 1.20543 1.20267 0.78638 0.85548 0.84874 1.90697 1.45497 1.21627 1.86392 1.48119 1.55905 1.23501 1.06064 1.21887 0.98073 0.96204 0.85228 1.21997 0.97736 0.96329 1.00963 1.21525 1.00760 0.96264 0.96809 1.21972 0.99604 0.98950 0.97119 1.22306 0.96110 0.81890 1.02915 0.91058 0.90766 0.86666 0.87203 0.86597 0.98597 0.98980 0.92682 0.88821 0.91224 0.93392 0.88687 0.90663 0.89853 0.93191 0.88185 0.89361 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.14 71.98 0.66 -2.86 16 2 C 0.06 1.68 2.13 29.85 0.06 1.74 16 3 H 0.11 3.07 6.27 -2.39 -0.01 3.06 16 4 O -0.34 -12.65 9.44 -45.19 -0.43 -13.07 16 5 C 0.47 19.28 7.93 71.24 0.56 19.84 16 6 O -0.53 -24.36 15.20 21.96 0.33 -24.03 16 7 C -0.10 -4.07 5.75 29.85 0.17 -3.90 16 8 C 0.04 2.27 4.26 29.85 0.13 2.40 16 9 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 10 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 11 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 12 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 13 Si 0.97 44.25 29.54 68.60 2.03 46.27 16 14 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 C 0.52 14.80 7.05 87.66 0.62 15.42 16 18 O -0.56 -20.82 15.98 15.48 0.25 -20.57 16 19 N -0.60 -11.74 2.97 -818.08 -2.43 -14.17 16 20 C 0.11 1.74 6.45 86.51 0.56 2.30 16 21 C -0.13 -1.62 6.10 30.82 0.19 -1.44 16 22 C -0.12 -1.02 5.88 30.62 0.18 -0.84 16 23 C -0.14 -1.49 6.08 30.67 0.19 -1.31 16 24 C 0.09 1.10 5.21 86.36 0.45 1.55 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.11 1.60 5.89 -2.39 -0.01 1.59 16 28 H 0.11 4.34 8.14 -2.39 -0.02 4.32 16 29 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 30 H 0.00 -0.26 8.10 -2.39 -0.02 -0.28 16 31 H -0.01 -0.50 8.10 -2.39 -0.02 -0.52 16 32 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.07 1.49 7.03 -2.39 -0.02 1.48 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.16 4.69 -2.38 -0.01 1.15 16 42 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -77.14 342.11 5.50 -71.64 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.00 Total: 9.10 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.46 Total: 2.51 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -2.14 Total: -71.84 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: 0.15 Total: -57.67 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -77.14 5.50 -71.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.653 kcal (2) G-P(sol) polarization free energy of solvation -77.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds