Wall clock time and date at job start Tue Mar 31 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.53006 * 109.47445 * 119.99774 * 2 1 3 5 5 C 1.52997 * 109.47445 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47092 * 300.00075 * 5 4 2 7 7 C 1.53001 * 109.46963 * 60.00194 * 6 5 4 8 8 C 1.53000 * 109.46886 * 299.99499 * 7 6 5 9 9 H 1.09002 * 109.47398 * 300.00496 * 8 7 6 10 10 C 1.50703 * 109.46912 * 180.02562 * 8 7 6 11 11 O 1.20824 * 119.99775 * 240.00306 * 10 8 7 12 12 O 1.34231 * 120.00026 * 60.00282 * 10 8 7 13 13 C 1.45196 * 116.99766 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.47043 * 179.97438 * 13 12 10 15 15 O 1.21286 * 119.99837 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00154 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99970 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47125 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00014 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00143 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99686 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00000 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47123 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46863 * 119.99902 * 22 20 18 25 25 H 1.48494 * 109.47213 * 239.99882 * 22 20 18 26 26 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47171 * 299.99624 * 1 2 3 28 28 H 1.09000 * 109.47140 * 60.00376 * 1 2 3 29 29 H 1.09001 * 109.46726 * 300.00265 * 4 2 1 30 30 H 1.09002 * 109.46589 * 59.99669 * 4 2 1 31 31 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 32 32 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.46497 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47067 * 299.99853 * 6 5 4 35 35 H 1.09001 * 109.46652 * 179.97438 * 7 6 5 36 36 H 1.08992 * 109.47514 * 59.99933 * 7 6 5 37 37 H 1.08999 * 109.47138 * 299.99837 * 13 12 10 38 38 H 1.09004 * 109.47557 * 59.99945 * 13 12 10 39 39 H 0.97000 * 119.99838 * 0.02562 * 16 14 13 40 40 H 1.08999 * 109.47098 * 300.00049 * 17 16 14 41 41 H 1.08994 * 109.47627 * 59.99827 * 17 16 14 42 42 H 0.97005 * 119.99358 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0806 -1.4416 0.0004 7 6 3.5706 -0.7203 -1.2489 8 6 2.0406 -0.7210 -1.2492 9 1 1.6776 -1.7488 -1.2494 10 6 1.5382 -0.0111 -2.4800 11 8 0.8432 0.9711 -2.3695 12 8 1.8630 -0.4699 -3.6989 13 6 1.3442 0.2642 -4.8392 14 6 1.8096 -0.3925 -6.1133 15 8 2.5092 -1.3821 -6.0649 16 7 1.4476 0.1192 -7.3064 17 6 1.8996 -0.5195 -8.5449 18 6 1.3614 0.2424 -9.7285 19 1 0.7440 1.1149 -9.5736 20 6 1.6571 -0.1744 -11.0091 21 7 2.4094 -1.2366 -11.1976 22 14 0.9893 0.7696 -12.4761 23 1 0.1771 1.9173 -11.9982 24 1 2.1198 1.2719 -13.2978 25 1 0.1407 -0.1295 -13.2987 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2073 2.1392 30 1 1.6767 -1.7489 1.2493 31 1 3.9330 0.3072 1.2498 32 1 3.9334 -1.2341 2.1398 33 1 5.1706 -1.4415 0.0009 34 1 3.7176 -2.4694 0.0002 35 1 3.9347 -1.2337 -2.1388 36 1 3.9335 0.3074 -1.2487 37 1 0.2547 0.2635 -4.8067 38 1 1.7081 1.2912 -4.8064 39 1 0.8878 0.9104 -7.3451 40 1 2.9891 -0.5185 -8.5776 41 1 1.5362 -1.5466 -8.5777 42 1 2.6177 -1.5295 -12.0986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820945682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:39 Heat of formation + Delta-G solvation = -155.357440 kcal Electronic energy + Delta-G solvation = -22173.958506 eV Core-core repulsion = 18731.835831 eV Total energy + Delta-G solvation = -3442.122676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97796 -39.06808 -38.24651 -36.33000 -34.25444 -32.75366 -32.42291 -31.67217 -29.16460 -27.08917 -26.45609 -23.97490 -22.63613 -21.81372 -20.93285 -19.99488 -19.88038 -17.78208 -17.44615 -16.59175 -16.40402 -15.52591 -15.21073 -15.00017 -14.79068 -14.63835 -14.44145 -14.25133 -13.58878 -13.42031 -12.94311 -12.82043 -12.50343 -12.43548 -12.10208 -12.01056 -11.82773 -11.73148 -11.47980 -11.17134 -11.01935 -10.98895 -10.94563 -10.77761 -10.63250 -10.38441 -10.35553 -10.02490 -9.43341 -9.17560 -8.79691 -7.99659 -6.20820 -4.28097 2.12741 2.45130 3.17497 3.21623 3.28855 3.31905 3.94942 4.26231 4.31892 4.36880 4.49128 4.78453 4.81763 4.92478 5.05965 5.08943 5.15463 5.16037 5.17504 5.23884 5.27230 5.34309 5.44412 5.50220 5.65149 5.72308 5.76468 5.81352 5.86429 5.94882 6.02764 6.12320 6.16665 6.48449 7.21787 7.30285 7.44758 7.58912 7.71967 7.90897 8.49303 8.70426 8.95814 9.38385 10.89389 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041266 B = 0.002712 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.364247 B =10322.381364 C =10801.312495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.074 4.074 3 H 0.078 0.922 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.073 4.073 9 H 0.109 0.891 10 C 0.464 3.536 11 O -0.507 6.507 12 O -0.327 6.327 13 C 0.048 3.952 14 C 0.499 3.501 15 O -0.534 6.534 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 2.451 24.171 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.092 4.092 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.092 4.092 9 H 0.127 0.873 10 C 0.307 3.693 11 O -0.396 6.396 12 O -0.242 6.242 13 C -0.030 4.030 14 C 0.282 3.718 15 O -0.412 6.412 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.226 0.774 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.468 1.899 24.020 24.099 hybrid contribution -0.738 0.973 -1.020 1.591 sum -1.206 2.871 23.000 23.210 Atomic orbital electron populations 1.22102 0.94532 1.01827 1.03519 1.21013 0.96371 0.99693 0.92173 0.90326 1.21612 0.95535 1.00832 0.97090 1.21595 0.95599 1.00981 0.97916 1.21533 1.00704 0.99513 0.93745 1.21562 0.91841 1.02062 0.99736 1.21164 0.97907 1.00984 0.89128 0.87297 1.23861 0.77404 0.82986 0.85033 1.90592 1.35749 1.26089 1.87131 1.86577 1.68888 1.54605 1.14147 1.22853 1.00303 0.96160 0.83672 1.19906 0.82022 0.85292 0.84558 1.90708 1.37634 1.25652 1.87165 1.46367 1.51834 1.31273 1.06229 1.19176 0.95874 0.93721 0.78172 1.21246 1.33268 1.13208 0.90543 0.91723 1.24960 0.94857 0.95091 0.99126 1.69988 1.36193 1.23703 1.22311 0.86336 0.78740 0.79686 0.82004 1.19604 1.20758 1.20755 0.93132 0.92668 0.90116 0.91471 0.91657 0.91854 0.91814 0.91331 0.91496 0.89858 0.91360 0.88614 0.88621 0.77440 0.95260 0.95259 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 8.87 37.16 0.33 -1.19 16 2 C -0.07 -0.66 1.89 -90.62 -0.17 -0.83 16 3 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 4 C -0.11 -0.78 5.20 -26.73 -0.14 -0.92 16 5 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 6 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 7 C -0.11 -1.07 5.14 -26.73 -0.14 -1.21 16 8 C -0.07 -0.74 2.16 -91.77 -0.20 -0.94 16 9 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 10 C 0.46 6.22 6.96 36.01 0.25 6.47 16 11 O -0.51 -7.43 13.41 -18.75 -0.25 -7.68 16 12 O -0.33 -5.16 9.66 -45.90 -0.44 -5.61 16 13 C 0.05 0.73 5.94 36.01 0.21 0.94 16 14 C 0.50 10.03 7.91 -10.98 -0.09 9.94 16 15 O -0.53 -13.05 16.50 -14.11 -0.23 -13.28 16 16 N -0.71 -14.64 5.55 -61.48 -0.34 -14.98 16 17 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 18 C -0.54 -14.58 9.28 -34.44 -0.32 -14.89 16 19 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 22 Si 0.91 20.67 29.54 -169.99 -5.02 15.64 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.93 5.52 -51.93 -0.29 0.65 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 38 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 39 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -32.31 345.29 -7.97 -40.28 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.92 Total: 1.94 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.70 Total: 3.58 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.40 Total: -40.07 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.93 Total: -26.57 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.31 -7.97 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820945682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.076 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds