Wall clock time and date at job start Tue Mar 31 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47152 * 2 1 4 4 C 1.53009 * 109.46998 * 240.00182 * 2 1 3 5 5 C 1.52998 * 109.46698 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47441 * 60.00305 * 5 4 2 7 7 H 1.08997 * 109.47343 * 59.99446 * 6 5 4 8 8 C 1.50698 * 109.47229 * 179.97438 * 6 5 4 9 9 O 1.20819 * 120.00412 * 120.00024 * 8 6 5 10 10 O 1.34232 * 119.99607 * 299.99466 * 8 6 5 11 11 C 1.45209 * 116.99894 * 179.97438 * 10 8 6 12 12 C 1.50698 * 109.46951 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00006 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99634 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00399 * 0.02562 * 15 14 12 17 17 C 1.38954 * 120.00062 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99693 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00141 * 179.72913 * 17 15 14 20 20 H 1.48502 * 109.47314 * 180.27179 * 19 17 15 21 21 H 1.48506 * 109.46947 * 300.27161 * 19 17 15 22 22 H 1.48493 * 109.47595 * 60.27030 * 19 17 15 23 23 C 1.53000 * 109.47028 * 299.99363 * 6 5 4 24 24 C 1.52997 * 109.47293 * 120.00394 * 2 1 3 25 25 H 1.08997 * 109.47343 * 59.99723 * 24 2 1 26 26 C 1.53000 * 109.47028 * 299.99640 * 24 2 1 27 27 H 1.09003 * 109.47378 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47371 * 299.99830 * 1 2 3 29 29 H 1.09003 * 109.47554 * 59.99866 * 1 2 3 30 30 H 1.08997 * 109.46804 * 60.00020 * 4 2 1 31 31 H 1.08997 * 109.47020 * 299.99899 * 4 2 1 32 32 H 1.08997 * 109.47304 * 299.99727 * 5 4 2 33 33 H 1.09004 * 109.46342 * 179.97438 * 5 4 2 34 34 H 1.09003 * 109.46563 * 60.00427 * 11 10 8 35 35 H 1.08993 * 109.46953 * 300.00731 * 11 10 8 36 36 H 0.96991 * 120.00493 * 0.02562 * 14 12 11 37 37 H 0.97005 * 120.00032 * 359.72836 * 18 17 15 38 38 H 1.08997 * 109.47366 * 179.97438 * 23 6 5 39 39 H 1.08997 * 109.47126 * 300.00215 * 23 6 5 40 40 H 1.09007 * 109.46940 * 60.00024 * 26 24 2 41 41 H 1.08997 * 109.47366 * 179.97438 * 26 24 2 42 42 H 1.08997 * 109.47587 * 300.00483 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 3.7175 -2.4694 -0.0002 8 6 5.5874 -1.4415 -0.0011 9 8 6.1920 -0.9182 0.9047 10 8 6.2581 -2.0231 -1.0079 11 6 7.7083 -1.9845 -0.9431 12 6 8.2837 -2.6818 -2.1488 13 8 7.5444 -3.1634 -2.9811 14 7 9.6198 -2.7693 -2.3027 15 6 10.1433 -3.4032 -3.3998 16 1 9.4851 -3.8321 -4.1410 17 6 11.5208 -3.4940 -3.5583 18 7 12.3217 -2.9717 -2.6568 19 14 12.2341 -4.3642 -5.0493 20 1 13.7171 -4.3296 -4.9803 21 1 11.7722 -5.7755 -5.0667 22 1 11.7801 -3.6796 -6.2863 23 6 3.5705 -0.7204 1.2489 24 6 2.0400 -0.7213 1.2492 25 1 1.6766 -1.7489 1.2492 26 6 1.5300 -0.0001 2.4984 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6766 -0.2074 -2.1392 31 1 1.6766 -1.7489 -1.2493 32 1 3.9329 0.3071 -1.2498 33 1 3.9332 -1.2349 -2.1394 34 1 8.0449 -2.4887 -0.0372 35 1 8.0438 -0.9476 -0.9279 36 1 10.2109 -2.3839 -1.6373 37 1 11.9512 -2.5194 -1.8827 38 1 3.9339 -1.2342 2.1388 39 1 3.9335 0.3074 1.2486 40 1 0.4400 -0.0001 2.4985 41 1 1.8930 -0.5142 3.3884 42 1 1.8933 1.0276 2.4985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837826164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:24 Heat of formation + Delta-G solvation = -158.414931 kcal Electronic energy + Delta-G solvation = -22313.578830 eV Core-core repulsion = 18871.323571 eV Total energy + Delta-G solvation = -3442.255259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.71648 -39.08782 -38.18149 -36.15688 -34.35327 -33.56355 -32.27153 -31.25764 -28.64077 -27.67524 -26.17705 -24.35777 -22.75953 -22.00597 -20.29424 -19.95702 -19.93279 -18.05626 -17.44095 -16.76310 -16.39840 -15.68582 -15.15582 -14.91346 -14.64968 -14.51039 -14.26634 -13.96262 -13.77999 -13.44288 -12.99246 -12.80312 -12.41688 -12.29304 -12.12503 -12.08778 -12.00805 -11.67477 -11.30455 -11.21080 -11.15203 -11.02309 -10.80376 -10.58078 -10.44550 -10.23521 -10.20528 -10.11187 -9.93911 -9.64156 -8.57324 -8.14426 -6.83404 -3.97858 2.29931 2.69324 3.25516 3.32497 3.52865 3.69087 4.17362 4.35330 4.37188 4.41073 4.68956 4.71463 4.78758 5.00731 5.06530 5.14593 5.15132 5.18957 5.29139 5.32162 5.34193 5.46631 5.53969 5.55813 5.57927 5.60504 5.70085 5.75927 5.79831 5.80273 5.93365 5.97710 6.01467 6.10168 6.11877 6.27064 6.60806 7.67179 7.88146 7.99106 8.48000 8.67125 9.34970 9.71432 10.59552 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.043230 B = 0.002845 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.543827 B = 9840.843810 C =10341.537144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.076 4.076 7 H 0.108 0.892 8 C 0.461 3.539 9 O -0.515 6.515 10 O -0.324 6.324 11 C 0.059 3.941 12 C 0.441 3.559 13 O -0.569 6.569 14 N -0.566 5.566 15 C -0.384 4.384 16 H 0.102 0.898 17 C -0.007 4.007 18 N -0.896 5.896 19 Si 1.093 2.907 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.283 1.283 23 C -0.098 4.098 24 C -0.086 4.086 25 H 0.072 0.928 26 C -0.148 4.148 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.378 0.622 37 H 0.262 0.738 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.286 6.273 8.197 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.095 4.095 7 H 0.126 0.874 8 C 0.303 3.697 9 O -0.404 6.404 10 O -0.238 6.238 11 C -0.018 4.018 12 C 0.226 3.774 13 O -0.452 6.452 14 N -0.204 5.204 15 C -0.513 4.513 16 H 0.120 0.880 17 C -0.210 4.210 18 N -0.534 5.534 19 Si 0.919 3.081 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.136 4.136 24 C -0.104 4.104 25 H 0.091 0.909 26 C -0.206 4.206 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.211 0.789 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.131 5.648 7.125 21.182 hybrid contribution -0.857 0.745 1.368 1.778 sum -19.988 6.393 8.493 22.639 Atomic orbital electron populations 1.21887 0.95238 1.01835 1.01646 1.21229 0.95478 0.99777 0.94436 0.91063 1.21596 0.94469 1.01153 0.97713 1.21554 0.96095 1.00903 0.96577 1.21070 0.86771 1.03254 0.98438 0.87372 1.23857 0.91782 0.74633 0.79383 1.90635 1.70583 1.42727 1.36445 1.86564 1.20914 1.70492 1.45872 1.22710 0.77310 1.02090 0.99710 1.19245 0.83296 0.86657 0.88158 1.90563 1.58531 1.51353 1.44780 1.41779 1.04410 1.51160 1.23100 1.20563 0.93853 1.35457 1.01421 0.88022 1.26603 0.92022 0.98197 1.04157 1.70904 1.37225 1.34393 1.10895 0.83109 0.76141 0.75802 0.73082 1.20308 1.20861 1.20865 1.21520 0.94738 1.01400 0.95920 1.21175 0.94423 1.00003 0.94816 0.90916 1.21871 1.01009 1.00562 0.97113 0.92691 0.92428 0.92786 0.91315 0.91480 0.91407 0.89844 0.89712 0.89708 0.78861 0.92629 0.90987 0.90932 0.92282 0.92666 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.84 37.15 0.33 -0.63 16 2 C -0.09 -0.69 2.25 -90.62 -0.20 -0.89 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.94 5.20 -26.73 -0.14 -1.08 16 5 C -0.11 -1.22 5.13 -26.73 -0.14 -1.36 16 6 C -0.08 -0.89 2.63 -91.77 -0.24 -1.13 16 7 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 8 C 0.46 7.34 7.26 36.00 0.26 7.60 16 9 O -0.52 -9.10 15.73 -18.74 -0.29 -9.40 16 10 O -0.32 -6.12 9.66 -45.91 -0.44 -6.56 16 11 C 0.06 1.15 5.94 36.00 0.21 1.37 16 12 C 0.44 10.80 7.86 -10.99 -0.09 10.71 16 13 O -0.57 -16.06 16.08 -14.11 -0.23 -16.29 16 14 N -0.57 -14.38 5.28 -10.96 -0.06 -14.43 16 15 C -0.38 -10.78 9.68 -14.93 -0.14 -10.92 16 16 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 17 C -0.01 -0.18 5.50 -17.47 -0.10 -0.28 16 18 N -0.90 -24.96 13.68 55.50 0.76 -24.20 16 19 Si 1.09 23.99 29.92 -169.99 -5.09 18.90 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 C -0.10 -1.00 3.78 -26.70 -0.10 -1.10 16 24 C -0.09 -0.68 2.25 -90.59 -0.20 -0.88 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 C -0.15 -1.04 8.84 37.16 0.33 -0.71 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.34 6.43 -51.92 -0.33 0.01 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 34 H 0.08 1.50 8.13 -51.93 -0.42 1.08 16 35 H 0.08 1.50 8.13 -51.93 -0.42 1.08 16 36 H 0.38 8.80 6.73 -40.82 -0.27 8.52 16 37 H 0.26 7.03 6.78 -40.82 -0.28 6.75 16 38 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 342.36 15.07 5.16 5.16 Total: -1.00 -33.03 342.36 -7.14 -40.16 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.73 Total: 5.96 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.22 Total: 0.70 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.70 Total: -38.64 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.97 Total: -32.25 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.09 Total: 18.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.03 -7.14 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837826164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.252 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds