Wall clock time and date at job start Tue Mar 31 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.05672 * 2 1 4 4 C 1.54266 * 110.02912 * 121.41222 * 2 1 3 5 5 C 1.54887 * 104.19888 * 95.67501 * 4 2 1 6 6 C 1.54893 * 102.74533 * 37.94403 * 5 4 2 7 7 C 1.53872 * 110.03682 * 238.57703 * 2 1 3 8 8 C 1.53002 * 110.03132 * 0.02562 * 7 2 1 9 9 C 1.50697 * 110.03154 * 121.38231 * 7 2 1 10 10 O 1.20827 * 119.99947 * 0.02562 * 9 7 2 11 11 O 1.34230 * 120.00192 * 180.02562 * 9 7 2 12 12 C 1.45192 * 117.00508 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47430 * 179.97438 * 12 11 9 14 14 O 1.21279 * 119.99842 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99778 * 179.97438 * 13 12 11 16 16 C 1.46498 * 119.99522 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47244 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99459 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00190 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00112 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47269 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47322 * 120.00066 * 21 19 17 24 24 H 1.48503 * 109.46999 * 240.00250 * 21 19 17 25 25 H 1.08994 * 109.47374 * 300.04281 * 1 2 3 26 26 H 1.08999 * 109.46732 * 60.04304 * 1 2 3 27 27 H 1.08998 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.09001 * 110.48620 * 214.35708 * 4 2 1 29 29 H 1.09004 * 110.48798 * 336.99542 * 4 2 1 30 30 H 1.09001 * 110.75744 * 156.25305 * 5 4 2 31 31 H 1.09000 * 110.75698 * 279.63123 * 5 4 2 32 32 H 1.09002 * 110.48578 * 203.38190 * 6 5 4 33 33 H 1.08998 * 110.60430 * 80.79077 * 6 5 4 34 34 H 1.09001 * 109.47376 * 59.99735 * 8 7 2 35 35 H 1.08998 * 109.47481 * 180.02562 * 8 7 2 36 36 H 1.09000 * 109.46992 * 299.99829 * 8 7 2 37 37 H 1.09003 * 109.47065 * 300.00292 * 12 11 9 38 38 H 1.09008 * 109.46874 * 60.00045 * 12 11 9 39 39 H 0.97001 * 120.00209 * 0.02562 * 15 13 12 40 40 H 1.09003 * 109.47727 * 300.00459 * 16 15 13 41 41 H 1.09002 * 109.47176 * 60.00782 * 16 15 13 42 42 H 0.96996 * 119.99586 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 2.3280 -2.1901 0.7194 6 6 2.8875 -1.9407 -0.7032 7 6 2.0572 -0.7537 -1.2336 8 6 0.8863 -1.2666 -2.0743 9 6 2.9267 0.1566 -2.0620 10 8 3.1142 1.2974 -1.7107 11 8 3.4930 -0.2998 -3.1902 12 6 4.3183 0.6321 -3.9374 13 6 4.8655 -0.0526 -5.1633 14 8 4.5876 -1.2121 -5.3851 15 7 5.6637 0.6236 -6.0131 16 6 6.1961 -0.0422 -7.2044 17 6 7.0517 0.9255 -7.9807 18 1 7.1858 1.9354 -7.6222 19 6 7.6632 0.5217 -9.1486 20 7 7.4994 -0.7080 -9.5854 21 14 8.7243 1.7210 -10.1103 22 1 8.7481 3.0312 -9.4117 23 1 10.1070 1.1887 -10.2102 24 1 8.1617 1.8965 -11.4734 25 1 -0.3634 0.5145 0.8895 26 1 -0.3633 0.5132 -0.8904 27 1 -0.3633 -1.0277 0.0005 28 1 2.9810 -0.2999 1.5968 29 1 1.3060 -0.7694 2.0256 30 1 3.0675 -2.6930 1.3426 31 1 1.4030 -2.7651 0.6754 32 1 2.7402 -2.8198 -1.3306 33 1 3.9443 -1.6775 -0.6591 34 1 0.2778 -0.4238 -2.4023 35 1 1.2697 -1.7989 -2.9448 36 1 0.2772 -1.9428 -1.4746 37 1 3.7168 1.4900 -4.2379 38 1 5.1442 0.9691 -3.3107 39 1 5.8863 1.5509 -5.8354 40 1 6.7983 -0.8994 -6.9032 41 1 5.3708 -0.3803 -7.8311 42 1 7.9294 -0.9919 -10.4072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837933068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:36 Heat of formation + Delta-G solvation = -144.806187 kcal Electronic energy + Delta-G solvation = -22400.799943 eV Core-core repulsion = 18959.134804 eV Total energy + Delta-G solvation = -3441.665139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14250 -39.18017 -38.30082 -36.26859 -34.25317 -32.42285 -31.92263 -31.39082 -29.12569 -26.79816 -25.94870 -25.67231 -22.89149 -22.02501 -20.83082 -19.94506 -18.83119 -17.65181 -17.43982 -16.70061 -16.52655 -15.71447 -15.48894 -15.15612 -14.77041 -14.46733 -14.14926 -13.88084 -13.46047 -13.21216 -13.10900 -12.93763 -12.50375 -12.45114 -12.01537 -11.96901 -11.81326 -11.74776 -11.22443 -11.10677 -10.99747 -10.95105 -10.91976 -10.79229 -10.67825 -10.65155 -10.35629 -10.25652 -9.43255 -9.17637 -8.79633 -7.99587 -6.20736 -4.28071 2.13704 2.43568 3.17536 3.21659 3.28892 3.31950 3.93129 4.10249 4.23236 4.32108 4.49005 4.81556 4.94317 4.99035 5.02763 5.12720 5.14040 5.15555 5.20114 5.24182 5.25564 5.34164 5.47649 5.56169 5.60211 5.66293 5.73590 5.77805 5.80812 5.96105 6.02564 6.05026 6.19757 6.38851 7.21716 7.30277 7.44765 7.58792 7.70825 7.90920 8.49326 8.70444 8.95806 9.38464 10.89476 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.043126 B = 0.002786 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.106812 B =10048.069199 C =10228.993441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.096 0.904 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.111 4.111 7 C -0.050 4.050 8 C -0.143 4.143 9 C 0.470 3.530 10 O -0.511 6.511 11 O -0.324 6.324 12 C 0.046 3.954 13 C 0.500 3.500 14 O -0.534 6.534 15 N -0.707 5.707 16 C 0.251 3.749 17 C -0.544 4.544 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 0.502 20.473 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.114 0.886 4 C -0.158 4.158 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.051 4.051 8 C -0.200 4.200 9 C 0.313 3.687 10 O -0.399 6.399 11 O -0.238 6.238 12 C -0.031 4.031 13 C 0.283 3.717 14 O -0.411 6.411 15 N -0.357 5.357 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.226 0.774 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.711 -0.129 20.193 23.861 hybrid contribution 0.881 1.302 -0.627 1.692 sum -11.830 1.172 19.566 22.895 Atomic orbital electron populations 1.21976 0.94342 1.02017 1.01820 1.21872 0.96221 1.00927 0.91997 0.88577 1.22448 1.01124 0.95299 0.96879 1.22502 1.01072 0.96916 0.95534 1.22445 0.99100 0.96590 0.96714 1.21190 0.94858 0.94753 0.94298 1.22021 0.96333 1.01723 0.99876 1.23749 0.78070 0.87445 0.79455 1.90617 1.59338 1.19939 1.70032 1.86576 1.59017 1.43380 1.34833 1.22874 0.95305 0.91952 0.92983 1.19887 0.80464 0.87430 0.83947 1.90705 1.58925 1.16588 1.74878 1.46368 1.48248 1.15488 1.25607 1.19179 0.94062 0.93427 0.80264 1.21246 1.30840 0.98083 1.08095 0.91726 1.24955 0.96442 0.95489 0.97136 1.69986 1.43147 1.16660 1.22407 0.86338 0.79930 0.80780 0.79730 1.19601 1.20756 1.20752 0.92565 0.92296 0.92069 0.91425 0.91123 0.91076 0.91061 0.89801 0.91012 0.91804 0.90890 0.90667 0.88628 0.88649 0.77443 0.95259 0.95255 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 7.87 37.16 0.29 -0.78 16 2 C -0.09 -0.85 3.10 -89.50 -0.28 -1.13 16 3 H 0.10 1.08 6.40 -51.93 -0.33 0.75 16 4 C -0.12 -0.92 6.37 -25.07 -0.16 -1.08 16 5 C -0.12 -0.91 6.91 -24.74 -0.17 -1.08 16 6 C -0.11 -1.07 5.88 -25.07 -0.15 -1.22 16 7 C -0.05 -0.53 0.88 -154.54 -0.14 -0.67 16 8 C -0.14 -1.35 7.11 37.16 0.26 -1.08 16 9 C 0.47 6.62 6.44 36.00 0.23 6.85 16 10 O -0.51 -7.96 14.96 -18.75 -0.28 -8.25 16 11 O -0.32 -5.22 9.61 -45.90 -0.44 -5.66 16 12 C 0.05 0.73 5.94 36.01 0.21 0.94 16 13 C 0.50 10.10 7.91 -10.98 -0.09 10.01 16 14 O -0.53 -13.06 16.50 -14.10 -0.23 -13.29 16 15 N -0.71 -14.70 5.55 -61.47 -0.34 -15.04 16 16 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 17 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 18 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.84 13.29 55.43 0.74 -25.11 16 21 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.46 6.82 -51.93 -0.35 0.10 16 27 H 0.06 0.39 6.65 -51.93 -0.35 0.05 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 33 H 0.07 0.76 7.85 -51.93 -0.41 0.36 16 34 H 0.06 0.59 6.78 -51.93 -0.35 0.23 16 35 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.07 0.55 6.70 -51.93 -0.35 0.20 16 37 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 38 H 0.10 1.31 8.14 -51.92 -0.42 0.89 16 39 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -32.66 343.66 -7.45 -40.11 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.63 Total: 2.34 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.42 Total: 4.04 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.40 Total: -40.15 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.95 Total: -27.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.66 -7.45 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837933068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.695 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds