Wall clock time and date at job start Tue Mar 31 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.06056 * 2 1 4 4 C 1.54276 * 110.02932 * 121.41780 * 2 1 3 5 5 C 1.54889 * 104.30888 * 142.95940 * 4 2 1 6 6 C 1.54888 * 102.75215 * 321.98974 * 5 4 2 7 7 C 1.54222 * 110.14281 * 238.43876 * 2 1 3 8 8 C 1.52998 * 110.04253 * 121.42526 * 7 2 1 9 9 C 1.50696 * 110.02667 * 0.04018 * 7 2 1 10 10 O 1.20824 * 120.00259 * 249.40585 * 9 7 2 11 11 O 1.34233 * 119.99952 * 69.40086 * 9 7 2 12 12 C 1.45202 * 117.00025 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.46857 * 179.97438 * 12 11 9 14 14 O 1.21276 * 120.00264 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99783 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00500 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47624 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99403 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99831 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99965 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00147 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47033 * 90.00003 * 21 19 17 23 23 H 1.48500 * 109.46945 * 209.99696 * 21 19 17 24 24 H 1.48496 * 109.46769 * 329.99890 * 21 19 17 25 25 H 1.09001 * 109.47192 * 295.33442 * 1 2 3 26 26 H 1.08995 * 109.46833 * 55.33296 * 1 2 3 27 27 H 1.08997 * 109.47191 * 175.33285 * 1 2 3 28 28 H 1.09002 * 110.48615 * 24.21843 * 4 2 1 29 29 H 1.08997 * 110.48450 * 261.70344 * 4 2 1 30 30 H 1.09003 * 110.75712 * 80.30620 * 5 4 2 31 31 H 1.09001 * 110.75460 * 203.49024 * 5 4 2 32 32 H 1.09003 * 110.48715 * 156.62511 * 6 5 4 33 33 H 1.09000 * 110.48222 * 279.26650 * 6 5 4 34 34 H 1.08996 * 109.47460 * 178.67346 * 8 7 2 35 35 H 1.08994 * 109.47078 * 298.67321 * 8 7 2 36 36 H 1.09001 * 109.47313 * 58.67093 * 8 7 2 37 37 H 1.09003 * 109.46929 * 299.99693 * 12 11 9 38 38 H 1.08998 * 109.46764 * 59.99788 * 12 11 9 39 39 H 0.97004 * 120.00335 * 0.02562 * 15 13 12 40 40 H 1.08998 * 109.46564 * 300.00773 * 16 15 13 41 41 H 1.09003 * 109.46606 * 59.99619 * 16 15 13 42 42 H 0.96994 * 120.00688 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0584 -0.7556 1.2369 5 6 3.3151 -1.5007 0.7224 6 6 2.8915 -1.9434 -0.7001 7 6 2.0611 -0.7578 -1.2337 8 6 2.9452 0.1646 -2.0753 9 6 0.9096 -1.2658 -2.0625 10 8 0.6847 -2.4514 -2.1219 11 8 0.1336 -0.4010 -2.7347 12 6 -0.9576 -0.9610 -3.5119 13 6 -1.7132 0.1519 -4.1913 14 8 -1.3665 1.3035 -4.0355 15 7 -2.7741 -0.1327 -4.9722 16 6 -3.5092 0.9491 -5.6323 17 6 -4.6416 0.3679 -6.4390 18 1 -4.7978 -0.7005 -6.4584 19 6 -5.4773 1.2001 -7.1530 20 7 -6.4653 0.6929 -7.8575 21 14 -5.2056 3.0480 -7.1210 22 1 -4.2886 3.4326 -8.2240 23 1 -6.5066 3.7427 -7.2940 24 1 -4.6055 3.4375 -5.8198 25 1 -0.3633 0.4397 0.9288 26 1 -0.3633 0.5845 -0.8452 27 1 -0.3633 -1.0242 -0.0836 28 1 1.3142 -1.4661 1.5966 29 1 2.3275 -0.0538 2.0264 30 1 4.1720 -0.8284 0.6787 31 1 3.5355 -2.3647 1.3493 32 1 3.7690 -2.1068 -1.3259 33 1 2.2819 -2.8457 -0.6531 34 1 3.3343 -0.3865 -2.9313 35 1 2.3561 1.0119 -2.4259 36 1 3.7753 0.5258 -1.4680 37 1 -0.5566 -1.6404 -4.2641 38 1 -1.6313 -1.5068 -2.8515 39 1 -3.0517 -1.0539 -5.0966 40 1 -3.9105 1.6276 -4.8795 41 1 -2.8356 1.4960 -6.2921 42 1 -7.0531 1.2782 -8.3601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837933070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:38 Heat of formation + Delta-G solvation = -143.842156 kcal Electronic energy + Delta-G solvation = -22739.856223 eV Core-core repulsion = 19298.232887 eV Total energy + Delta-G solvation = -3441.623336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25757 -39.18074 -38.22811 -36.34292 -34.38200 -32.44862 -31.87277 -31.60639 -29.43710 -27.18395 -26.60148 -24.56024 -22.92167 -21.93069 -20.95125 -20.12911 -19.35000 -17.53486 -17.28666 -16.85724 -16.49013 -15.89577 -15.71543 -15.19721 -14.70183 -14.47317 -14.12778 -13.89751 -13.41091 -13.21502 -12.98177 -12.84113 -12.76349 -12.57484 -12.38250 -12.19385 -12.07039 -11.80255 -11.33257 -11.08729 -11.05502 -10.94154 -10.90066 -10.81931 -10.79466 -10.57262 -10.33647 -10.01408 -9.55530 -9.34549 -8.83042 -8.27943 -6.25330 -4.28482 2.12382 2.38486 3.02449 3.24307 3.31182 3.38881 3.83562 4.09346 4.17714 4.29771 4.41657 4.77005 4.90394 4.93063 4.98496 5.09313 5.10049 5.13959 5.17655 5.21798 5.23753 5.28161 5.45331 5.55251 5.57942 5.64085 5.69217 5.78783 5.84737 5.91701 6.06125 6.06727 6.14305 6.35939 6.71932 6.99567 7.08477 7.30600 7.66466 8.04030 8.40260 8.67042 8.78864 9.33720 10.86489 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.038092 B = 0.003160 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.889411 B = 8859.439495 C = 9065.313258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 H 0.088 0.912 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.053 4.053 8 C -0.141 4.141 9 C 0.477 3.523 10 O -0.512 6.512 11 O -0.325 6.325 12 C 0.046 3.954 13 C 0.502 3.498 14 O -0.536 6.536 15 N -0.700 5.700 16 C 0.223 3.777 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.891 5.891 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.260 1.260 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.399 0.601 40 H 0.028 0.972 41 H 0.023 0.977 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.036 -3.999 16.606 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.098 4.098 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.054 4.054 8 C -0.198 4.198 9 C 0.320 3.680 10 O -0.400 6.400 11 O -0.239 6.239 12 C -0.032 4.032 13 C 0.286 3.714 14 O -0.414 6.414 15 N -0.350 5.350 16 C 0.101 3.899 17 C -0.584 4.584 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.528 5.528 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.185 1.185 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.233 0.767 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.998 -3.450 16.527 25.416 hybrid contribution -0.336 0.249 -0.336 0.537 sum 18.662 -3.201 16.191 24.913 Atomic orbital electron populations 1.22185 0.94345 1.02145 1.03548 1.21872 0.96365 0.99552 0.92033 0.89325 1.22492 0.97436 0.99132 0.96891 1.22478 0.97731 1.00117 0.95659 1.22501 0.99189 0.97091 0.96265 1.21396 0.91630 0.97831 0.94588 1.21922 0.99262 0.99396 0.99215 1.23570 0.82577 0.84784 0.77045 1.90637 1.70394 1.17745 1.61233 1.86608 1.39978 1.39744 1.57616 1.22813 0.88526 0.95949 0.95896 1.19923 0.81616 0.89473 0.80416 1.90694 1.67230 1.21119 1.62309 1.46075 1.29266 1.12252 1.47454 1.19547 0.91385 0.86410 0.92566 1.21065 1.11868 0.96039 1.29424 0.90139 1.24788 0.94402 0.99133 0.94239 1.69871 1.16996 1.35935 1.29980 0.86816 0.78016 0.85130 0.79738 1.19785 1.20833 1.18461 0.91830 0.90278 0.92977 0.91225 0.91149 0.91218 0.91076 0.90771 0.89404 0.92089 0.90585 0.91071 0.88464 0.88498 0.76737 0.95450 0.95904 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 7.84 37.16 0.29 -1.51 16 2 C -0.08 -0.74 3.17 -89.31 -0.28 -1.02 16 3 H 0.09 0.75 7.68 -51.93 -0.40 0.35 16 4 C -0.12 -0.92 6.35 -25.07 -0.16 -1.08 16 5 C -0.12 -0.84 6.91 -24.74 -0.17 -1.01 16 6 C -0.11 -1.00 5.75 -25.07 -0.14 -1.15 16 7 C -0.05 -0.55 0.89 -154.36 -0.14 -0.68 16 8 C -0.14 -1.28 8.01 37.16 0.30 -0.98 16 9 C 0.48 6.41 4.62 36.00 0.17 6.57 16 10 O -0.51 -7.75 15.14 -18.75 -0.28 -8.03 16 11 O -0.32 -4.88 7.60 -45.91 -0.35 -5.23 16 12 C 0.05 0.67 5.94 36.00 0.21 0.89 16 13 C 0.50 9.51 7.91 -10.99 -0.09 9.43 16 14 O -0.54 -12.16 16.50 -14.10 -0.23 -12.39 16 15 N -0.70 -13.86 5.55 -61.47 -0.34 -14.21 16 16 C 0.22 5.38 4.50 -5.19 -0.02 5.35 16 17 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 18 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 21 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.03 6.52 -51.93 -0.34 0.70 16 27 H 0.05 0.61 7.17 -51.93 -0.37 0.24 16 28 H 0.07 0.55 7.85 -51.93 -0.41 0.14 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.58 7.84 -51.93 -0.41 0.18 16 33 H 0.09 0.92 6.80 -51.93 -0.35 0.57 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 38 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.40 6.85 8.32 -40.82 -0.34 6.51 16 40 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 41 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -32.39 340.41 -7.20 -39.59 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.76 Total: 2.29 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.47 Total: 1.80 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.43 Total: -39.65 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.87 Total: -25.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.39 -7.20 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837933070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.253 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds