Wall clock time and date at job start Tue Mar 31 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.05555 * 2 1 4 4 C 1.54270 * 110.03104 * 238.58252 * 2 1 3 5 5 C 1.54888 * 104.19653 * 217.10585 * 4 2 1 6 6 C 1.54891 * 102.91500 * 37.85296 * 5 4 2 7 7 C 1.53877 * 110.03063 * 121.41979 * 2 1 3 8 8 C 1.52999 * 110.02799 * 238.61264 * 7 2 1 9 9 C 1.50700 * 110.03416 * 359.97438 * 7 2 1 10 10 O 1.20818 * 119.99905 * 113.19135 * 9 7 2 11 11 O 1.34226 * 119.99907 * 293.18908 * 9 7 2 12 12 C 1.45194 * 116.99945 * 179.97438 * 11 9 7 13 13 C 1.50705 * 109.47436 * 180.02562 * 12 11 9 14 14 O 1.21284 * 119.99685 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00461 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00079 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47137 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99412 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99953 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99751 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99829 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46900 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46848 * 120.00017 * 21 19 17 24 24 H 1.48497 * 109.47148 * 240.00131 * 21 19 17 25 25 H 1.09003 * 109.47005 * 185.53482 * 1 2 3 26 26 H 1.08998 * 109.47035 * 305.53339 * 1 2 3 27 27 H 1.08995 * 109.47308 * 65.54066 * 1 2 3 28 28 H 1.09003 * 110.48661 * 98.42908 * 4 2 1 29 29 H 1.09001 * 110.60002 * 335.83720 * 4 2 1 30 30 H 1.08997 * 110.75887 * 156.26005 * 5 4 2 31 31 H 1.09005 * 110.75428 * 279.44680 * 5 4 2 32 32 H 1.08991 * 110.49060 * 80.82889 * 6 5 4 33 33 H 1.09003 * 110.48476 * 203.47248 * 6 5 4 34 34 H 1.09010 * 109.46991 * 60.00566 * 8 7 2 35 35 H 1.09004 * 109.47234 * 179.97438 * 8 7 2 36 36 H 1.08994 * 109.47594 * 300.00235 * 8 7 2 37 37 H 1.08999 * 109.47589 * 300.00404 * 12 11 9 38 38 H 1.08997 * 109.47218 * 60.00417 * 12 11 9 39 39 H 0.96999 * 119.99151 * 0.02562 * 15 13 12 40 40 H 1.08999 * 109.47399 * 300.00675 * 16 15 13 41 41 H 1.09002 * 109.47092 * 60.00152 * 16 15 13 42 42 H 0.97000 * 119.99645 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5008 -0.7192 6 6 2.8923 -1.9406 0.7050 7 6 2.0571 -0.7536 1.2337 8 6 2.9399 0.1706 2.0747 9 6 0.9038 -1.2588 2.0618 10 8 0.7063 -2.4465 2.1616 11 8 0.0960 -0.3891 2.6886 12 6 -0.9948 -0.9466 3.4680 13 6 -1.7884 0.1716 4.0931 14 8 -1.4666 1.3250 3.9003 15 7 -2.8558 -0.1099 4.8665 16 6 -3.6268 0.9772 5.4746 17 6 -4.7591 0.3986 6.2835 18 1 -4.8907 -0.6719 6.3393 19 6 -5.6268 1.2358 6.9523 20 7 -5.4666 2.5393 6.8838 21 14 -7.0306 0.5185 7.9543 22 1 -6.9923 -0.9636 7.8698 23 1 -6.8908 0.9368 9.3723 24 1 -8.3244 1.0121 7.4179 25 1 -0.3633 -1.0229 0.0991 26 1 -0.3633 0.5972 0.8363 27 1 -0.3634 0.4255 -0.9354 28 1 2.3297 -0.0536 -2.0255 29 1 1.3152 -1.4660 -1.5988 30 1 3.5325 -2.3679 -1.3423 31 1 4.1718 -0.8299 -0.6783 32 1 2.2837 -2.8437 0.6610 33 1 3.7707 -2.1015 1.3300 34 1 2.3565 1.0310 2.4027 35 1 3.3077 -0.3718 2.9457 36 1 3.7841 0.5112 1.4753 37 1 -1.6439 -1.5327 2.8173 38 1 -0.5909 -1.5879 4.2513 39 1 -3.1128 -1.0323 5.0209 40 1 -2.9777 1.5635 6.1250 41 1 -4.0311 1.6183 4.6913 42 1 -6.0772 3.1283 7.3540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837933071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:41 Heat of formation + Delta-G solvation = -147.366843 kcal Electronic energy + Delta-G solvation = -22689.517338 eV Core-core repulsion = 19247.741160 eV Total energy + Delta-G solvation = -3441.776178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21253 -39.04901 -38.14105 -36.28582 -34.25007 -32.42167 -31.82075 -31.55225 -29.11917 -26.76602 -26.51585 -24.51064 -23.02562 -22.19506 -20.91381 -19.94228 -19.28293 -17.45440 -17.20714 -16.78265 -16.29748 -15.78491 -15.48679 -15.16300 -14.59641 -14.50449 -14.13197 -13.85903 -13.28979 -13.11556 -12.91312 -12.78489 -12.66868 -12.49108 -12.14784 -12.00554 -11.80151 -11.71779 -11.30583 -11.01568 -10.99263 -10.95236 -10.89491 -10.83179 -10.76699 -10.49129 -10.35644 -10.28532 -9.43246 -9.17145 -8.79584 -7.99376 -6.20792 -4.28055 2.17558 2.46276 3.18000 3.21629 3.28889 3.31936 3.94070 4.13087 4.22662 4.32218 4.47534 4.82914 4.93968 4.97605 5.03775 5.15491 5.16156 5.19368 5.24911 5.28154 5.32326 5.34909 5.49480 5.58999 5.61527 5.68687 5.73783 5.82906 5.88786 5.96209 6.09973 6.11433 6.22592 6.42582 7.21828 7.30562 7.44808 7.59137 7.73694 7.90960 8.49599 8.70551 8.96022 9.38461 10.89406 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.042142 B = 0.002956 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.260227 B = 9470.695629 C = 9607.223182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 H 0.088 0.912 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.054 4.054 8 C -0.141 4.141 9 C 0.477 3.523 10 O -0.514 6.514 11 O -0.323 6.323 12 C 0.045 3.955 13 C 0.500 3.500 14 O -0.534 6.534 15 N -0.707 5.707 16 C 0.251 3.749 17 C -0.544 4.544 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.470 -8.174 -14.084 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.099 4.099 3 H 0.107 0.893 4 C -0.159 4.159 5 C -0.160 4.160 6 C -0.149 4.149 7 C -0.055 4.055 8 C -0.198 4.198 9 C 0.320 3.680 10 O -0.402 6.402 11 O -0.238 6.238 12 C -0.033 4.033 13 C 0.283 3.717 14 O -0.411 6.411 15 N -0.357 5.357 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.225 0.775 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.506 -7.479 -14.083 22.951 hybrid contribution -1.098 -0.935 0.799 1.648 sum 15.408 -8.414 -13.285 22.016 Atomic orbital electron populations 1.22208 0.94277 1.02096 1.03612 1.21810 0.96450 0.99596 0.92015 0.89317 1.22488 0.97396 0.99112 0.96919 1.22482 0.97782 1.00100 0.95663 1.22525 0.99130 0.97062 0.96233 1.21368 0.91613 0.97830 0.94655 1.21924 0.99273 0.99392 0.99190 1.23559 0.82589 0.84819 0.77011 1.90628 1.71629 1.17709 1.60241 1.86623 1.38752 1.39451 1.58975 1.22854 0.88287 0.96171 0.95941 1.19891 0.81886 0.89440 0.80491 1.90705 1.68539 1.21051 1.60808 1.46369 1.28491 1.12093 1.48771 1.19172 0.89830 0.84888 0.93011 1.21248 1.12275 0.93535 1.31215 0.91734 1.24955 0.97927 0.94748 0.96382 1.69984 1.37615 1.02406 1.42184 0.86339 0.81552 0.79191 0.79712 1.19601 1.20761 1.20755 0.93135 0.89996 0.91911 0.91145 0.91254 0.91143 0.91220 0.89509 0.90761 0.90575 0.92123 0.91048 0.88729 0.88704 0.77463 0.95277 0.95270 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 7.81 37.16 0.29 -1.61 16 2 C -0.08 -0.78 3.16 -89.50 -0.28 -1.06 16 3 H 0.09 0.80 7.67 -51.93 -0.40 0.40 16 4 C -0.12 -0.96 6.36 -25.07 -0.16 -1.12 16 5 C -0.12 -0.88 6.90 -24.74 -0.17 -1.05 16 6 C -0.11 -1.03 5.75 -24.96 -0.14 -1.17 16 7 C -0.05 -0.57 0.88 -154.43 -0.14 -0.71 16 8 C -0.14 -1.34 8.01 37.16 0.30 -1.04 16 9 C 0.48 6.64 4.66 36.01 0.17 6.81 16 10 O -0.51 -7.99 15.15 -18.74 -0.28 -8.27 16 11 O -0.32 -5.07 7.49 -45.89 -0.34 -5.42 16 12 C 0.05 0.70 5.94 36.01 0.21 0.91 16 13 C 0.50 9.98 7.91 -10.98 -0.09 9.90 16 14 O -0.53 -12.87 16.50 -14.11 -0.23 -13.10 16 15 N -0.71 -14.62 5.55 -61.47 -0.34 -14.96 16 16 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 17 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 18 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 21 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 26 H 0.08 1.14 6.44 -51.93 -0.33 0.80 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.57 7.86 -51.93 -0.41 0.16 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.94 6.83 -51.93 -0.35 0.58 16 33 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 34 H 0.08 0.82 8.09 -51.92 -0.42 0.40 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 38 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 39 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -32.34 343.87 -7.55 -39.89 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.79 Total: 2.95 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.45 Total: 3.14 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.40 Total: -40.02 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.86 Total: -26.79 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.34 -7.55 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837933071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.476 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds