Wall clock time and date at job start Tue Mar 31 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.06092 * 2 1 4 4 C 1.54093 * 110.16122 * 238.53360 * 2 1 3 5 5 C 1.54269 * 106.62146 * 240.88435 * 4 2 1 6 6 C 1.54890 * 104.19698 * 336.27662 * 5 4 2 7 7 C 1.54268 * 110.03156 * 121.42255 * 2 1 3 8 8 C 1.52993 * 110.48643 * 24.08056 * 7 2 1 9 9 C 1.50706 * 110.48295 * 261.56792 * 7 2 1 10 10 O 1.20824 * 120.00104 * 1.84346 * 9 7 2 11 11 O 1.34230 * 119.99717 * 181.83790 * 9 7 2 12 12 C 1.45199 * 116.99614 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.46928 * 180.02562 * 12 11 9 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99944 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99872 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 90.00289 * 21 19 17 23 23 H 1.48505 * 109.47195 * 210.00171 * 21 19 17 24 24 H 1.48493 * 109.47449 * 330.00136 * 21 19 17 25 25 H 1.08998 * 109.47009 * 298.58391 * 1 2 3 26 26 H 1.09002 * 109.46874 * 58.57975 * 1 2 3 27 27 H 1.09002 * 109.47205 * 178.58270 * 1 2 3 28 28 H 1.08992 * 110.11562 * 121.53464 * 4 2 1 29 29 H 1.09005 * 109.96737 * 0.14444 * 4 2 1 30 30 H 1.09001 * 110.48181 * 217.59877 * 5 4 2 31 31 H 1.09002 * 110.60009 * 95.01226 * 5 4 2 32 32 H 1.09001 * 110.75406 * 279.63619 * 6 5 4 33 33 H 1.08994 * 110.91680 * 156.32963 * 6 5 4 34 34 H 1.09001 * 109.47469 * 298.16195 * 8 7 2 35 35 H 1.09000 * 109.47405 * 58.16483 * 8 7 2 36 36 H 1.09001 * 109.47118 * 178.16246 * 8 7 2 37 37 H 1.09002 * 109.47177 * 60.00180 * 12 11 9 38 38 H 1.09001 * 109.47399 * 300.00009 * 12 11 9 39 39 H 0.97000 * 119.99708 * 359.97438 * 15 13 12 40 40 H 1.09002 * 109.47391 * 59.99686 * 16 15 13 41 41 H 1.09001 * 109.46813 * 299.99742 * 16 15 13 42 42 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0611 -0.7551 -1.2338 5 6 2.8883 -1.9434 -0.7015 6 6 3.3131 -1.5035 0.7215 7 6 2.0584 -0.7556 1.2368 8 6 1.0125 -1.7505 1.7437 9 6 2.4335 0.2148 2.3272 10 8 2.2675 1.4004 2.1642 11 8 2.9520 -0.2382 3.4794 12 6 3.2895 0.7533 4.4851 13 6 3.8545 0.0640 5.7003 14 8 3.9627 -1.1439 5.7169 15 7 4.2397 0.7898 6.7687 16 6 4.7896 0.1197 7.9497 17 6 5.1397 1.1487 8.9936 18 1 4.9692 2.1969 8.7971 19 6 5.6766 0.7519 10.1999 20 7 5.8837 -0.5246 10.4394 21 14 6.1099 2.0273 11.4941 22 1 4.9366 2.2571 12.3748 23 1 7.2517 1.5384 12.3081 24 1 6.4859 3.3002 10.8283 25 1 -0.3633 0.4917 0.9024 26 1 -0.3633 0.5357 -0.8770 27 1 -0.3634 -1.0274 -0.0254 28 1 2.6927 -0.0984 -1.8319 29 1 1.2276 -1.1196 -1.8344 30 1 3.7653 -2.1084 -1.3275 31 1 2.2782 -2.8455 -0.6558 32 1 4.1717 -0.8333 0.6785 33 1 3.5312 -2.3687 1.3474 34 1 0.1156 -1.2113 2.0483 35 1 0.7621 -2.4517 0.9476 36 1 1.4147 -2.2976 2.5964 37 1 2.3930 1.3067 4.7649 38 1 4.0309 1.4427 4.0813 39 1 4.1535 1.7558 6.7552 40 1 5.6864 -0.4328 7.6695 41 1 4.0489 -0.5706 8.3535 42 1 6.2618 -0.8037 11.2879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837933072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:43 Heat of formation + Delta-G solvation = -146.853292 kcal Electronic energy + Delta-G solvation = -22390.578574 eV Core-core repulsion = 18948.824666 eV Total energy + Delta-G solvation = -3441.753908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09103 -39.16837 -38.30158 -36.25926 -34.25063 -32.42027 -31.77285 -31.47087 -29.11509 -26.78896 -26.18614 -25.51843 -22.91836 -22.07427 -20.71821 -19.94247 -18.90651 -17.61042 -17.42341 -16.65355 -16.54133 -15.65916 -15.42087 -15.15568 -14.75506 -14.55900 -14.28495 -13.87099 -13.33304 -13.18459 -13.04516 -12.84020 -12.60764 -12.48373 -12.01664 -12.00788 -11.83704 -11.75107 -11.32191 -11.03570 -11.01216 -10.95191 -10.92557 -10.83253 -10.67825 -10.63716 -10.35299 -10.25334 -9.44909 -9.17325 -8.78984 -7.99349 -6.20448 -4.27840 2.14144 2.44374 3.17849 3.22574 3.28818 3.31214 3.92780 4.08759 4.24391 4.32783 4.47843 4.81155 4.92733 4.97455 4.99547 5.10866 5.15610 5.15752 5.24444 5.24574 5.28424 5.34459 5.45716 5.52316 5.62069 5.66575 5.71306 5.79253 5.85640 5.91257 6.00888 6.06747 6.17788 6.38810 7.21900 7.30483 7.45023 7.58857 7.71654 7.91194 8.49552 8.70524 8.95996 9.38586 10.89722 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.042871 B = 0.002794 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.963523 B =10019.772861 C =10271.304743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.090 0.910 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.052 4.052 8 C -0.140 4.140 9 C 0.471 3.529 10 O -0.511 6.511 11 O -0.324 6.324 12 C 0.047 3.953 13 C 0.500 3.500 14 O -0.534 6.534 15 N -0.707 5.707 16 C 0.251 3.749 17 C -0.545 4.545 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.082 0.110 -22.251 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 H 0.108 0.892 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.149 4.149 7 C -0.053 4.053 8 C -0.197 4.197 9 C 0.314 3.686 10 O -0.399 6.399 11 O -0.239 6.239 12 C -0.031 4.031 13 C 0.283 3.717 14 O -0.411 6.411 15 N -0.357 5.357 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.226 0.774 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.956 -0.549 -22.077 23.831 hybrid contribution 0.264 1.408 0.916 1.700 sum -8.692 0.859 -21.161 22.893 Atomic orbital electron populations 1.21950 0.94449 1.01966 1.01874 1.21817 0.96321 1.00280 0.91823 0.89152 1.22267 0.99614 0.96965 0.96868 1.22352 0.99866 0.98153 0.95606 1.22576 0.95307 1.00378 0.96616 1.21398 0.98240 0.94443 0.91205 1.21906 0.97552 0.98111 1.02118 1.23699 0.73445 0.88985 0.82496 1.90631 1.50894 1.18132 1.80234 1.86580 1.73021 1.39749 1.24505 1.22869 1.02063 0.90512 0.87659 1.19889 0.79854 0.88091 0.83893 1.90704 1.54823 1.13805 1.81770 1.46369 1.62610 1.10411 1.16327 1.19172 0.94233 0.93381 0.80098 1.21209 1.43948 0.93238 0.99961 0.91777 1.24953 0.95125 0.95633 0.98281 1.69972 1.43109 1.14598 1.24520 0.86389 0.78151 0.81112 0.81114 1.20421 1.20963 1.19715 0.92505 0.92516 0.92011 0.91536 0.91295 0.91159 0.91096 0.90933 0.89657 0.91718 0.90839 0.90829 0.88643 0.88652 0.77449 0.95265 0.95269 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 7.72 37.16 0.29 -0.88 16 2 C -0.08 -0.77 2.80 -89.39 -0.25 -1.02 16 3 H 0.09 0.99 6.88 -51.93 -0.36 0.63 16 4 C -0.12 -0.87 6.47 -25.50 -0.16 -1.03 16 5 C -0.12 -0.88 6.48 -25.07 -0.16 -1.05 16 6 C -0.11 -1.07 5.80 -24.74 -0.14 -1.21 16 7 C -0.05 -0.55 0.74 -154.00 -0.11 -0.66 16 8 C -0.14 -1.32 7.14 37.15 0.27 -1.05 16 9 C 0.47 6.62 6.60 36.01 0.24 6.86 16 10 O -0.51 -7.95 15.19 -18.75 -0.28 -8.24 16 11 O -0.32 -5.22 9.69 -45.90 -0.44 -5.66 16 12 C 0.05 0.73 5.94 36.01 0.21 0.94 16 13 C 0.50 10.10 7.91 -10.98 -0.09 10.01 16 14 O -0.53 -13.05 16.50 -14.10 -0.23 -13.29 16 15 N -0.71 -14.71 5.55 -61.47 -0.34 -15.05 16 16 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 17 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.85 13.29 55.43 0.74 -25.12 16 21 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H 0.06 0.52 7.72 -51.93 -0.40 0.12 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.42 6.61 -51.93 -0.34 0.08 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.42 7.68 -51.93 -0.40 0.02 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.45 7.68 -51.93 -0.40 0.06 16 32 H 0.07 0.73 8.05 -51.93 -0.42 0.32 16 33 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 34 H 0.06 0.60 6.77 -51.93 -0.35 0.24 16 35 H 0.07 0.54 6.87 -51.93 -0.36 0.18 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 38 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 39 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -32.65 344.47 -7.46 -40.10 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.70 Total: 2.22 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.36 Total: 4.17 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.40 Total: -40.17 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.96 Total: -27.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.65 -7.46 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837933072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.751 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds