Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47106 * 2 1 4 4 N 1.46505 * 109.47149 * 180.02562 * 3 2 1 5 5 C 1.46760 * 124.35088 * 89.99920 * 4 3 2 6 6 C 1.54481 * 105.47619 * 163.00579 * 5 4 3 7 7 H 1.08999 * 110.96787 * 267.26089 * 6 5 4 8 8 C 1.50698 * 110.97200 * 143.53191 * 6 5 4 9 9 O 1.20822 * 119.99804 * 0.02562 * 8 6 5 10 10 O 1.34231 * 120.00053 * 180.02562 * 8 6 5 11 11 C 1.45198 * 116.99983 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46884 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 C 1.54629 * 101.76117 * 25.41324 * 6 5 4 23 23 C 1.34415 * 124.34754 * 270.02258 * 4 3 2 24 24 O 1.21281 * 124.94385 * 0.42120 * 23 4 3 25 25 H 1.09000 * 109.47137 * 60.00227 * 1 2 3 26 26 H 1.09002 * 109.47125 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47124 * 300.00435 * 1 2 3 28 28 H 1.09004 * 109.46934 * 239.99938 * 2 1 3 29 29 H 1.09000 * 109.47137 * 119.99773 * 2 1 3 30 30 H 1.08998 * 109.47485 * 59.99786 * 3 2 1 31 31 H 1.09002 * 109.47435 * 300.00017 * 3 2 1 32 32 H 1.08996 * 110.24930 * 44.00525 * 5 4 3 33 33 H 1.09006 * 110.24553 * 282.00498 * 5 4 3 34 34 H 1.09002 * 109.47379 * 59.99613 * 11 10 8 35 35 H 1.09001 * 109.46782 * 299.99696 * 11 10 8 36 36 H 1.09001 * 109.47194 * 299.99482 * 12 11 10 37 37 H 1.08992 * 109.47399 * 59.99654 * 12 11 10 38 38 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 39 39 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 40 40 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.48573 * 93.88338 * 22 6 5 42 42 H 1.09003 * 110.49053 * 216.52109 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4426 -1.2126 6 6 5.7408 1.8777 -0.7501 7 1 5.8672 2.9561 -0.8464 8 6 6.8109 1.1416 -1.5144 9 8 6.5031 0.3354 -2.3600 10 8 8.1060 1.3817 -1.2557 11 6 9.0821 0.6368 -2.0306 12 6 10.4928 1.0422 -1.5989 13 6 11.5214 0.2577 -2.4159 14 6 12.9109 0.6575 -1.9912 15 1 13.0469 1.3975 -1.2164 16 6 14.0087 0.0787 -2.5918 17 7 13.8432 -0.8228 -3.5350 18 14 15.7312 0.5737 -2.0649 19 1 15.9124 0.2746 -0.6216 20 1 16.7294 -0.1876 -2.8579 21 1 15.9208 2.0282 -2.2966 22 6 5.7300 1.4517 0.7363 23 6 4.2638 1.4419 1.1088 24 8 3.8355 1.4339 2.2434 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9379 2.1532 -1.9388 33 1 4.3696 0.4423 -1.6442 34 1 8.9494 0.8566 -3.0899 35 1 8.9425 -0.4308 -1.8608 36 1 10.6321 2.1098 -1.7691 37 1 10.6258 0.8228 -0.5396 38 1 11.3823 -0.8100 -2.2462 39 1 11.3882 0.4776 -3.4752 40 1 14.6156 -1.2303 -3.9573 41 1 6.1594 0.4564 0.8510 42 1 6.2734 2.1749 1.3445 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840661916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -163.633864 kcal Electronic energy + Delta-G solvation = -21670.508018 eV Core-core repulsion = 18228.026450 eV Total energy + Delta-G solvation = -3442.481569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14776 -40.96582 -38.12637 -37.41797 -35.95156 -35.82918 -33.69414 -32.59396 -29.23395 -28.77732 -27.42126 -25.59838 -24.25261 -22.74798 -22.14711 -21.53886 -20.48027 -19.00951 -18.57341 -18.03214 -17.81368 -17.31724 -16.85644 -16.49174 -16.12589 -15.77889 -15.55618 -14.89009 -14.77546 -14.63144 -14.50222 -14.03533 -13.86156 -13.74653 -13.69849 -13.09443 -12.81696 -12.77962 -12.65174 -12.58993 -12.51856 -12.30598 -12.22756 -12.05634 -11.81350 -11.67635 -11.43693 -11.38640 -11.24249 -10.96965 -10.55528 -9.82312 -8.20854 -6.32012 1.04758 1.40432 1.41996 1.45333 1.46086 1.53620 1.97880 2.42152 3.06035 3.13125 3.23486 3.60806 3.71689 3.97635 4.01288 4.02973 4.05591 4.08266 4.31795 4.44193 4.44725 4.51284 4.56213 4.65048 4.74390 4.80808 4.82962 4.88848 4.90419 5.10418 5.13914 5.15879 5.30543 5.41818 5.51373 5.53572 5.66220 5.81888 5.96446 6.20499 6.61988 6.84127 7.00365 7.37432 8.90939 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.042304 B = 0.002399 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.710545 B =11666.673284 C =12020.312587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.614 5.614 5 C 0.115 3.885 6 C -0.084 4.084 7 H 0.163 0.837 8 C 0.472 3.528 9 O -0.531 6.531 10 O -0.351 6.351 11 C 0.078 3.922 12 C -0.095 4.095 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.065 0.935 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.265 1.265 22 C -0.139 4.139 23 C 0.516 3.484 24 O -0.571 6.571 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.066 0.934 38 H -0.004 1.004 39 H -0.002 1.002 40 H 0.264 0.736 41 H 0.106 0.894 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.901 7.217 4.993 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.347 5.347 5 C -0.007 4.007 6 C -0.103 4.103 7 H 0.181 0.819 8 C 0.316 3.684 9 O -0.420 6.420 10 O -0.267 6.267 11 C 0.005 3.995 12 C -0.133 4.133 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.180 4.180 23 C 0.304 3.696 24 O -0.450 6.450 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.014 0.986 39 H 0.016 0.984 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.179 6.857 5.187 26.607 hybrid contribution 1.156 -0.509 -0.152 1.272 sum -24.023 6.348 5.035 25.353 Atomic orbital electron populations 1.21666 0.93469 1.02478 1.02711 1.21890 0.97599 0.96836 1.01643 1.21664 0.76380 0.97419 1.04418 1.48454 1.07190 1.72230 1.06787 1.22146 0.87060 1.04448 0.87080 1.21947 0.90664 1.03807 0.93915 0.81924 1.23632 0.83561 0.80221 0.81035 1.90682 1.83252 1.34555 1.33542 1.86480 1.16309 1.62901 1.60993 1.23155 0.86540 0.95111 0.94728 1.21458 0.90028 1.01038 1.00750 1.18937 0.93206 0.94522 0.94547 1.21609 0.92066 1.23509 1.20906 0.91662 1.26003 1.04085 0.94928 0.94964 1.70091 1.31900 1.28664 1.26666 0.85464 0.78195 0.78647 0.78530 1.19142 1.21052 1.19020 1.22331 0.94355 1.06289 0.94976 1.21052 0.89742 0.74533 0.84246 1.90716 1.79245 1.52400 1.22669 0.90943 0.92280 0.92487 0.91461 0.94051 0.90618 0.87095 0.86035 0.90055 0.91491 0.91883 0.91296 0.91524 0.98570 0.98386 0.92725 0.87587 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.14 -1.92 6.26 30.59 0.19 -1.73 16 3 C 0.12 1.55 5.93 86.38 0.51 2.06 16 4 N -0.61 -9.75 2.93 -817.99 -2.40 -12.15 16 5 C 0.12 1.50 6.71 86.83 0.58 2.08 16 6 C -0.08 -1.22 3.66 -10.48 -0.04 -1.26 16 7 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 8 C 0.47 11.17 7.19 71.24 0.51 11.68 16 9 O -0.53 -15.64 15.25 21.98 0.34 -15.31 16 10 O -0.35 -9.76 10.22 -51.42 -0.53 -10.29 16 11 C 0.08 2.63 5.47 71.98 0.39 3.03 16 12 C -0.10 -3.72 5.53 30.59 0.17 -3.55 16 13 C 0.03 1.28 4.97 29.85 0.15 1.43 16 14 C -0.54 -30.10 9.11 25.60 0.23 -29.86 16 15 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 17 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 18 Si 0.97 43.43 29.54 68.60 2.03 45.45 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.14 -2.32 6.41 30.59 0.20 -2.12 16 23 C 0.52 10.93 8.02 87.90 0.71 11.64 16 24 O -0.57 -16.86 17.60 -3.03 -0.05 -16.91 16 25 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.12 7.93 -2.39 -0.02 1.10 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.34 6.96 -2.38 -0.02 1.32 16 34 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 35 H 0.06 2.18 8.13 -2.39 -0.02 2.16 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 39 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.11 1.91 7.89 -2.39 -0.02 1.90 16 42 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -71.70 355.72 5.43 -66.27 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.98 Total: 5.69 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 4.78 Total: -6.97 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -2.11 Total: -67.94 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.24 Total: -42.50 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.70 5.43 -66.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840661916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.362 kcal (2) G-P(sol) polarization free energy of solvation -71.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds