Wall clock time and date at job start Tue Mar 31 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46821 * 2 1 4 4 H 1.08996 * 109.47225 * 305.65783 * 3 2 1 5 5 C 1.50697 * 109.47204 * 185.65589 * 3 2 1 6 6 H 1.08000 * 120.00109 * 240.00081 * 5 3 2 7 7 C 1.37873 * 119.99793 * 59.99949 * 5 3 2 8 8 N 1.31511 * 120.00186 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99814 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46755 * 120.00461 * 9 7 5 12 12 H 1.48504 * 109.47393 * 239.99964 * 9 7 5 13 13 N 1.46902 * 109.47156 * 65.65555 * 3 2 1 14 14 C 1.46896 * 111.00359 * 205.50728 * 13 3 2 15 15 C 1.52998 * 109.47391 * 185.17537 * 14 13 3 16 16 H 1.09002 * 110.43846 * 61.10757 * 15 14 13 17 17 C 1.54166 * 110.27939 * 183.94270 * 15 14 13 18 18 C 1.51448 * 103.27419 * 118.94010 * 17 15 14 19 19 C 1.41555 * 125.97464 * 179.86832 * 18 17 15 20 20 O 1.21670 * 119.99925 * 179.71801 * 19 18 17 21 21 O 1.34921 * 119.99893 * 359.71584 * 19 18 17 22 22 C 1.42906 * 117.00230 * 179.97438 * 21 19 18 23 23 C 1.33877 * 108.05618 * 359.60764 * 18 17 15 24 24 C 1.50699 * 122.93337 * 180.24382 * 23 18 17 25 25 O 1.33762 * 114.13566 * 0.26399 * 23 18 17 26 26 H 1.08997 * 109.47529 * 55.58927 * 1 2 3 27 27 H 1.09010 * 109.47165 * 175.59019 * 1 2 3 28 28 H 1.08999 * 109.47600 * 295.58396 * 1 2 3 29 29 H 1.08993 * 109.47118 * 240.00549 * 2 1 3 30 30 H 1.08995 * 109.47237 * 119.99786 * 2 1 3 31 31 H 0.97003 * 119.99931 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00404 * 329.46796 * 13 3 2 33 33 H 1.09004 * 109.46422 * 65.17844 * 14 13 3 34 34 H 1.08996 * 109.47372 * 305.18126 * 14 13 3 35 35 H 1.08997 * 110.76939 * 0.43795 * 17 15 14 36 36 H 1.09003 * 110.54159 * 237.33455 * 17 15 14 37 37 H 1.09002 * 109.46590 * 60.00158 * 22 21 19 38 38 H 1.08999 * 109.46866 * 300.00779 * 22 21 19 39 39 H 1.08994 * 109.47422 * 179.97438 * 22 21 19 40 40 H 1.08992 * 109.47080 * 89.99547 * 24 23 18 41 41 H 1.09003 * 109.46845 * 209.99678 * 24 23 18 42 42 H 1.08998 * 109.46529 * 329.99728 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9848 -0.8350 5 6 3.5403 1.4450 -0.1400 6 1 4.1540 1.8866 0.6312 7 6 4.1297 0.8833 -1.2527 8 7 3.3825 0.3460 -2.1921 9 14 5.9896 0.8869 -1.4266 10 1 6.5962 1.5474 -0.2431 11 1 6.4808 -0.5115 -1.5185 12 1 6.3704 1.6271 -2.6565 13 7 1.6648 2.0945 1.2618 14 6 1.5724 3.5510 1.0948 15 6 1.3078 4.2044 2.4527 16 1 2.1255 3.9941 3.1421 17 6 1.1094 5.7240 2.2849 18 6 -0.2999 5.9487 2.7918 19 6 -0.9728 7.1926 2.8540 20 8 -2.1118 7.2475 3.2782 21 8 -0.3510 8.3172 2.4430 22 6 -1.0898 9.5371 2.5334 23 6 -0.8003 4.7646 3.1655 24 6 -2.1922 4.6012 3.7194 25 8 0.0433 3.7390 3.0047 26 1 -0.3634 0.5807 -0.8478 27 1 -0.3634 -1.0247 -0.0790 28 1 -0.3634 0.4438 0.9269 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7972 -0.0489 -2.9751 32 1 0.8013 1.7163 1.6217 33 1 0.7556 3.7873 0.4126 34 1 2.5088 3.9300 0.6855 35 1 1.1914 6.0111 1.2366 36 1 1.8288 6.2731 2.8925 37 1 -1.3663 9.7183 3.5720 38 1 -1.9912 9.4618 1.9252 39 1 -0.4752 10.3617 2.1723 40 1 -2.8888 4.4145 2.9023 41 1 -2.2111 3.7601 4.4124 42 1 -2.4834 5.5111 4.2443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846984290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:44 Heat of formation + Delta-G solvation = -112.807707 kcal Electronic energy + Delta-G solvation = -22701.988977 eV Core-core repulsion = 19261.711396 eV Total energy + Delta-G solvation = -3440.277581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34723 -40.02761 -36.67875 -36.30440 -33.29167 -33.05905 -31.83203 -30.67866 -28.50431 -27.40990 -26.22280 -24.09989 -23.00596 -22.43916 -21.52628 -19.60539 -19.52804 -17.62409 -17.03326 -16.56247 -16.30551 -15.91231 -15.40740 -14.83701 -14.43419 -14.35086 -13.91812 -13.46138 -13.32577 -13.25561 -13.04733 -12.71576 -12.53383 -12.36437 -12.18895 -12.08205 -11.73783 -11.49748 -11.20789 -11.14850 -11.03877 -10.82411 -10.79243 -10.60001 -10.37405 -9.98272 -9.70680 -9.61416 -9.09838 -8.41130 -8.36332 -7.29525 -5.98981 -4.03631 1.08578 2.83182 2.99105 3.15088 3.29907 3.38207 3.42797 4.39528 4.45840 4.66843 4.88255 4.99939 5.01474 5.06627 5.21060 5.28729 5.30325 5.39818 5.46673 5.49375 5.59318 5.79462 5.84409 6.00014 6.09438 6.14587 6.17007 6.25655 6.33240 6.42121 6.45873 6.84425 6.99181 7.05773 7.16104 7.45187 7.76362 7.84105 7.89007 8.23696 8.36771 8.71899 9.04376 9.61711 11.06388 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021921 B = 0.003785 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.030344 B = 7396.586513 C = 8219.581565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.685 5.685 14 C 0.064 3.936 15 C 0.078 3.922 16 H 0.115 0.885 17 C -0.088 4.088 18 C -0.349 4.349 19 C 0.543 3.457 20 O -0.532 6.532 21 O -0.352 6.352 22 C 0.037 3.963 23 C 0.215 3.785 24 C -0.119 4.119 25 O -0.281 6.281 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.259 0.741 32 H 0.323 0.677 33 H 0.024 0.976 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 12.145 9.491 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.316 5.316 14 C -0.067 4.067 15 C 0.023 3.977 16 H 0.133 0.867 17 C -0.126 4.126 18 C -0.352 4.352 19 C 0.395 3.605 20 O -0.426 6.426 21 O -0.269 6.269 22 C -0.057 4.057 23 C 0.162 3.838 24 C -0.175 4.175 25 O -0.190 6.190 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.141 0.859 33 H 0.042 0.958 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.454 11.846 9.691 17.484 hybrid contribution 0.208 0.330 -0.842 0.928 sum -8.246 12.175 8.849 17.162 Atomic orbital electron populations 1.21882 0.99577 0.99706 0.99614 1.21758 0.91265 1.00241 1.03104 1.19175 0.95544 0.90110 0.84095 0.98058 1.21245 0.91200 1.36666 1.04250 0.91954 1.24968 0.98145 0.95593 0.95847 1.69883 1.34633 1.39474 1.09534 0.86492 0.85721 0.77637 0.77846 1.19763 1.21131 1.21241 1.60674 1.36785 1.01240 1.32927 1.22182 1.01289 0.91551 0.91648 1.24140 0.83348 0.92454 0.97720 0.86741 1.21536 0.93291 0.94741 1.03056 1.19459 1.00533 0.91766 1.23424 1.18531 0.83979 0.83806 0.74213 1.90793 1.18875 1.87159 1.45746 1.86214 1.46398 1.16423 1.77874 1.22819 0.97063 0.83629 1.02198 1.22137 0.91593 0.86021 0.84049 1.21135 0.88350 1.05685 1.02326 1.86785 1.25353 1.32238 1.74667 0.93966 0.94354 0.94524 0.88225 0.93983 0.93110 0.85892 0.95831 0.88534 0.89287 0.89585 0.92436 0.92373 0.88384 0.88689 0.89980 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.67 37.15 0.36 -2.56 16 2 C -0.13 -2.93 5.36 -26.73 -0.14 -3.07 16 3 C 0.22 5.31 2.02 -68.86 -0.14 5.17 16 4 H 0.00 0.05 7.85 -51.93 -0.41 -0.36 16 5 C -0.49 -13.32 8.56 -34.44 -0.29 -13.61 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.14 11.29 55.43 0.63 -24.51 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 13 N -0.68 -14.13 6.27 -107.96 -0.68 -14.81 16 14 C 0.06 1.13 5.03 -3.83 -0.02 1.11 16 15 C 0.08 1.14 4.15 -26.12 -0.11 1.03 16 16 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 17 C -0.09 -1.15 6.43 -26.91 -0.17 -1.32 16 18 C -0.35 -4.78 6.06 -104.52 -0.63 -5.41 16 19 C 0.54 7.56 7.71 32.00 0.25 7.81 16 20 O -0.53 -7.90 13.79 -19.40 -0.27 -8.16 16 21 O -0.35 -4.43 10.26 -41.10 -0.42 -4.86 16 22 C 0.04 0.34 10.45 101.05 1.06 1.39 16 23 C 0.21 2.87 7.05 -35.84 -0.25 2.61 16 24 C -0.12 -1.28 9.63 36.01 0.35 -0.93 16 25 O -0.28 -4.16 10.28 -13.34 -0.14 -4.29 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.04 0.65 6.61 -51.93 -0.34 0.30 16 29 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.32 6.33 6.20 -39.29 -0.24 6.08 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 1.80 7.93 -51.93 -0.41 1.39 16 35 H 0.09 1.16 7.73 -51.93 -0.40 0.75 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 38 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.26 5.89 -51.93 -0.31 0.95 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -29.66 343.97 -7.18 -36.84 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.62 Total: 4.91 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 0.15 Total: -6.38 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.05 Total: -39.32 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.83 Total: -17.31 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.66 -7.18 -36.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.969 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds