Wall clock time and date at job start Tue Mar 31 2020 05:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 H 1.09004 * 109.46961 * 179.84088 * 3 2 1 5 5 C 1.50699 * 109.46941 * 299.83224 * 3 2 1 6 6 H 1.08002 * 119.99743 * 120.00339 * 5 3 2 7 7 C 1.37879 * 120.00372 * 300.00637 * 5 3 2 8 8 N 1.31513 * 119.99666 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00018 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47447 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47281 * 119.99653 * 9 7 5 12 12 H 1.48502 * 109.46931 * 239.99939 * 9 7 5 13 13 N 1.46892 * 109.47304 * 59.83688 * 3 2 1 14 14 C 1.46898 * 111.00140 * 85.93275 * 13 3 2 15 15 C 1.53002 * 109.47447 * 175.54023 * 14 13 3 16 16 H 1.09001 * 110.43914 * 303.89557 * 15 14 13 17 17 C 1.54161 * 110.68367 * 181.30063 * 15 14 13 18 18 C 1.51457 * 103.27005 * 241.56626 * 17 15 14 19 19 C 1.41558 * 125.97280 * 179.97438 * 18 17 15 20 20 O 1.21662 * 120.00385 * 179.71363 * 19 18 17 21 21 O 1.34928 * 120.00002 * 359.44447 * 19 18 17 22 22 C 1.42899 * 117.00276 * 180.27370 * 21 19 18 23 23 C 1.33866 * 108.05496 * 359.65853 * 18 17 15 24 24 C 1.50702 * 122.93264 * 180.22644 * 23 18 17 25 25 O 1.33756 * 114.13941 * 0.23044 * 23 18 17 26 26 H 1.08998 * 109.47271 * 295.59491 * 1 2 3 27 27 H 1.08998 * 109.46362 * 55.59770 * 1 2 3 28 28 H 1.09005 * 109.46789 * 175.59073 * 1 2 3 29 29 H 1.08997 * 109.47509 * 239.99888 * 2 1 3 30 30 H 1.09003 * 109.47029 * 119.99298 * 2 1 3 31 31 H 0.97005 * 119.99792 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99846 * 209.88545 * 13 3 2 33 33 H 1.09007 * 109.47172 * 55.54422 * 14 13 3 34 34 H 1.09001 * 109.47367 * 295.54196 * 14 13 3 35 35 H 1.08997 * 110.75593 * 123.07395 * 17 15 14 36 36 H 1.08996 * 110.56358 * 359.96426 * 17 15 14 37 37 H 1.08996 * 109.47092 * 299.99775 * 22 21 19 38 38 H 1.09005 * 109.47002 * 59.99663 * 22 21 19 39 39 H 1.09001 * 109.47028 * 179.97438 * 22 21 19 40 40 H 1.08999 * 109.47194 * 89.99968 * 24 23 18 41 41 H 1.08992 * 109.47407 * 210.00198 * 24 23 18 42 42 H 1.08999 * 109.46678 * 330.00290 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0029 5 6 1.5410 2.1517 -1.2325 6 1 0.9199 3.0299 -1.1360 7 6 1.8774 1.6794 -2.4835 8 7 2.6342 0.6102 -2.6010 9 14 1.2595 2.5589 -4.0112 10 1 0.4334 3.7260 -3.6104 11 1 2.4169 3.0244 -4.8166 12 1 0.4363 1.6251 -4.8210 13 7 1.5472 2.1361 1.1974 14 6 2.4397 1.9095 2.3419 15 6 1.9566 2.7343 3.5366 16 1 1.8918 3.7891 3.2697 17 6 2.8937 2.5420 4.7456 18 6 1.9863 1.9354 5.7957 19 6 2.3656 1.5633 7.1078 20 8 1.5426 1.0879 7.8672 21 8 3.6412 1.7309 7.5144 22 6 3.9549 1.3282 8.8491 23 6 0.7614 1.8191 5.2685 24 6 -0.4092 1.2555 6.0322 25 8 0.6669 2.2466 4.0046 26 1 -0.3634 0.4439 0.9268 27 1 -0.3632 0.5806 -0.8479 28 1 -0.3633 -1.0247 -0.0790 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.8706 0.2777 -3.4811 32 1 1.4289 3.1225 1.0209 33 1 3.4532 2.2117 2.0778 34 1 2.4327 0.8515 2.6042 35 1 3.2880 3.4998 5.0849 36 1 3.7046 1.8577 4.4964 37 1 3.3463 1.8963 9.5525 38 1 3.7477 0.2644 8.9658 39 1 5.0103 1.5162 9.0468 40 1 -0.9256 2.0620 6.5527 41 1 -1.0968 0.7719 5.3385 42 1 -0.0516 0.5251 6.7580 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846984296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:49 Heat of formation + Delta-G solvation = -111.318437 kcal Electronic energy + Delta-G solvation = -22725.033704 eV Core-core repulsion = 19284.820702 eV Total energy + Delta-G solvation = -3440.213001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32858 -40.01197 -36.66763 -36.29288 -33.39029 -33.03439 -31.67532 -30.44143 -28.51212 -27.41028 -25.96880 -24.00312 -23.05819 -22.84781 -21.62846 -19.69575 -19.03419 -17.69224 -16.99470 -16.72568 -16.30958 -15.65286 -15.32945 -14.97278 -14.46263 -14.00549 -13.78139 -13.65573 -13.31264 -13.17364 -13.01849 -12.72287 -12.53029 -12.18690 -12.17637 -12.04618 -11.75370 -11.59544 -11.44327 -11.01178 -10.92095 -10.79272 -10.64578 -10.40120 -10.34253 -10.05594 -9.72607 -9.37753 -8.79727 -8.50164 -8.38405 -7.29317 -6.04733 -4.10385 1.11788 2.83701 3.00958 3.16178 3.26606 3.35185 3.38635 4.34177 4.42269 4.64015 4.88760 4.93050 5.00383 5.06402 5.19293 5.26370 5.33241 5.36648 5.42504 5.47805 5.59102 5.72941 5.82081 5.92808 6.04327 6.12875 6.26780 6.45130 6.54777 6.69068 6.85897 7.01852 7.24114 7.28321 7.47212 7.73293 7.76585 7.81679 7.85593 8.23165 8.33608 8.61381 8.98487 9.54623 11.01181 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.003377 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.777964 B = 8288.739889 C = 8533.141774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.680 5.680 14 C 0.054 3.946 15 C 0.078 3.922 16 H 0.104 0.896 17 C -0.087 4.087 18 C -0.355 4.355 19 C 0.543 3.457 20 O -0.532 6.532 21 O -0.354 6.354 22 C 0.038 3.962 23 C 0.219 3.781 24 C -0.120 4.120 25 O -0.263 6.263 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.012 0.988 29 H 0.086 0.914 30 H 0.008 0.992 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.625 2.762 18.041 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.018 0.982 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.311 5.311 14 C -0.076 4.076 15 C 0.023 3.977 16 H 0.122 0.878 17 C -0.125 4.125 18 C -0.358 4.358 19 C 0.395 3.605 20 O -0.426 6.426 21 O -0.271 6.271 22 C -0.057 4.057 23 C 0.166 3.834 24 C -0.175 4.175 25 O -0.171 6.171 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.031 0.969 29 H 0.105 0.895 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.112 2.020 18.093 18.205 hybrid contribution 0.796 0.915 -0.953 1.542 sum 0.684 2.935 17.140 17.403 Atomic orbital electron populations 1.21444 0.97427 0.97389 1.01417 1.21427 0.95142 0.98168 0.99349 1.19163 0.92879 0.91571 0.85537 0.98187 1.21215 1.31628 1.12002 0.90277 0.92186 1.24891 0.95023 0.95002 0.98968 1.69896 1.36645 1.22733 1.23432 0.86514 0.78563 0.79711 0.83068 1.19750 1.21157 1.20992 1.60702 1.48535 1.15873 1.05990 1.22279 0.94803 0.99817 0.90680 1.23979 0.79518 0.99420 0.94791 0.87793 1.21506 0.98052 1.01787 0.91148 1.19408 0.96398 1.23779 0.96221 1.18525 0.80019 0.75102 0.86873 1.90793 1.51534 1.44309 1.55923 1.86207 1.30377 1.77715 1.32765 1.22811 1.01527 1.00482 0.80882 1.22199 0.94602 0.82848 0.83791 1.21136 0.94213 1.02582 0.99613 1.86906 1.34976 1.71819 1.23427 0.93798 0.92543 0.96851 0.89548 0.97321 0.92984 0.85199 0.93839 0.90861 0.89739 0.89398 0.92446 0.92376 0.88438 0.88784 0.89737 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.52 37.16 0.35 -2.34 16 2 C -0.10 -2.47 5.59 -26.73 -0.15 -2.62 16 3 C 0.22 5.22 2.30 -68.87 -0.16 5.06 16 4 H 0.00 0.01 7.71 -51.93 -0.40 -0.39 16 5 C -0.51 -13.44 7.26 -34.44 -0.25 -13.69 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.68 -13.68 5.63 -107.95 -0.61 -14.28 16 14 C 0.05 0.91 5.09 -3.82 -0.02 0.89 16 15 C 0.08 1.08 3.99 -26.12 -0.10 0.97 16 16 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.09 -1.08 6.45 -26.90 -0.17 -1.25 16 18 C -0.35 -4.81 6.06 -104.52 -0.63 -5.44 16 19 C 0.54 7.51 7.71 32.00 0.25 7.75 16 20 O -0.53 -7.92 13.79 -19.39 -0.27 -8.19 16 21 O -0.35 -4.37 10.26 -41.12 -0.42 -4.80 16 22 C 0.04 0.33 10.45 101.05 1.06 1.39 16 23 C 0.22 2.97 7.05 -35.84 -0.25 2.72 16 24 C -0.12 -1.34 9.63 36.01 0.35 -0.99 16 25 O -0.26 -3.98 10.72 -13.32 -0.14 -4.13 16 26 H 0.04 0.95 7.74 -51.93 -0.40 0.55 16 27 H 0.06 1.36 7.07 -51.93 -0.37 1.00 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 30 H 0.01 0.19 7.60 -51.93 -0.39 -0.21 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.33 6.44 8.14 -39.29 -0.32 6.12 16 33 H 0.04 0.71 7.94 -51.92 -0.41 0.30 16 34 H 0.07 1.31 7.61 -51.93 -0.40 0.92 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.08 7.74 -51.93 -0.40 0.67 16 37 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 38 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.11 1.33 5.89 -51.93 -0.31 1.03 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -29.56 343.55 -7.12 -36.68 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.63 Total: 3.84 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 0.17 Total: -5.96 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.02 Total: -38.45 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.83 Total: -17.11 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.56 -7.12 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.638 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds