Wall clock time and date at job start Tue Mar 31 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46957 * 2 1 4 4 H 1.09001 * 109.46668 * 54.83376 * 3 2 1 5 5 C 1.50702 * 109.47277 * 174.83269 * 3 2 1 6 6 H 1.07997 * 120.00214 * 120.00181 * 5 3 2 7 7 C 1.37878 * 119.99892 * 300.00377 * 5 3 2 8 8 N 1.31516 * 120.00001 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46879 * 90.00230 * 9 7 5 11 11 H 1.48498 * 109.47035 * 209.99700 * 9 7 5 12 12 H 1.48494 * 109.47464 * 330.00356 * 9 7 5 13 13 N 1.46890 * 109.47305 * 294.83423 * 3 2 1 14 14 C 1.46902 * 111.00090 * 153.82496 * 13 3 2 15 15 C 1.53001 * 109.47205 * 175.31969 * 14 13 3 16 16 H 1.09002 * 110.43928 * 61.11010 * 15 14 13 17 17 C 1.54163 * 110.39347 * 183.87006 * 15 14 13 18 18 C 1.51451 * 103.27075 * 118.99355 * 17 15 14 19 19 C 1.41569 * 125.97380 * 179.87225 * 18 17 15 20 20 O 1.21660 * 119.99969 * 179.71701 * 19 18 17 21 21 O 1.34926 * 119.99761 * 359.71421 * 19 18 17 22 22 C 1.42893 * 116.99720 * 179.97438 * 21 19 18 23 23 C 1.33869 * 108.05743 * 359.61003 * 18 17 15 24 24 C 1.50698 * 122.93425 * 180.24307 * 23 18 17 25 25 O 1.33760 * 114.13520 * 0.25869 * 23 18 17 26 26 H 1.09003 * 109.47076 * 186.23381 * 1 2 3 27 27 H 1.09000 * 109.47056 * 306.23044 * 1 2 3 28 28 H 1.08999 * 109.47454 * 66.23103 * 1 2 3 29 29 H 1.09005 * 109.47105 * 240.00629 * 2 1 3 30 30 H 1.08994 * 109.47684 * 120.00232 * 2 1 3 31 31 H 0.97006 * 119.99489 * 179.97438 * 8 7 5 32 32 H 1.00902 * 111.00401 * 29.87543 * 13 3 2 33 33 H 1.09000 * 109.47150 * 55.32136 * 14 13 3 34 34 H 1.08998 * 109.47417 * 295.31954 * 14 13 3 35 35 H 1.09002 * 110.77212 * 0.49993 * 17 15 14 36 36 H 1.08999 * 110.55170 * 237.39028 * 17 15 14 37 37 H 1.08999 * 109.47312 * 60.00572 * 22 21 19 38 38 H 1.08994 * 109.47716 * 300.00314 * 22 21 19 39 39 H 1.09009 * 109.47028 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.47366 * 89.99884 * 24 23 18 41 41 H 1.09000 * 109.46812 * 210.00129 * 24 23 18 42 42 H 1.09009 * 109.46869 * 329.99453 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6030 1.9823 0.8401 5 6 3.5415 1.4446 0.1280 6 1 4.1489 1.8884 -0.6469 7 6 4.1398 0.8797 1.2343 8 7 3.4001 0.3396 2.1781 9 14 6.0012 0.8816 1.3925 10 1 6.4369 2.1151 2.0952 11 1 6.4331 -0.3087 2.1683 12 1 6.6130 0.8399 0.0402 13 7 1.6548 2.0981 -1.2568 14 6 1.5483 3.5527 -1.0808 15 6 1.2611 4.2102 -2.4321 16 1 0.3165 3.8485 -2.8384 17 6 1.2409 5.7451 -2.2892 18 6 2.3611 6.1942 -3.2042 19 6 2.7593 7.5328 -3.4362 20 8 3.6816 7.7706 -4.1931 21 8 2.1159 8.5448 -2.8178 22 6 2.5709 9.8701 -3.0978 23 6 2.9128 5.1038 -3.7509 24 6 4.0679 5.1666 -4.7167 25 8 2.3490 3.9538 -3.3653 26 1 -0.3633 -1.0216 0.1116 27 1 -0.3633 0.6074 0.8290 28 1 -0.3634 0.4142 -0.9405 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8212 -0.0581 2.9563 32 1 0.7940 1.7135 -1.6163 33 1 2.4853 3.9397 -0.6803 34 1 0.7371 3.7765 -0.3881 35 1 1.4438 6.0402 -1.2597 36 1 0.2854 6.1481 -2.6247 37 1 2.4735 10.0698 -4.1649 38 1 3.6163 9.9650 -2.8044 39 1 1.9696 10.5866 -2.5381 40 1 5.0064 5.1218 -4.1642 41 1 4.0114 4.3239 -5.4058 42 1 4.0212 6.0994 -5.2788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846984299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:51 Heat of formation + Delta-G solvation = -110.480764 kcal Electronic energy + Delta-G solvation = -22788.926439 eV Core-core repulsion = 19348.749762 eV Total energy + Delta-G solvation = -3440.176677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23359 -39.92964 -36.61585 -36.30921 -33.27501 -32.93292 -31.79905 -30.64873 -28.44717 -27.37424 -26.17274 -24.07808 -22.91967 -22.41043 -21.49287 -19.63223 -19.47914 -17.58832 -16.92243 -16.49579 -16.27033 -15.74859 -15.25670 -14.87979 -14.60024 -14.11546 -13.79920 -13.51177 -13.32405 -13.23281 -12.80897 -12.64291 -12.40826 -12.27688 -12.23277 -12.09929 -11.74724 -11.44561 -11.41556 -11.11282 -10.85529 -10.76296 -10.72210 -10.61773 -10.27899 -9.96466 -9.71029 -9.62218 -9.09839 -8.35688 -8.28710 -7.26891 -5.97251 -4.00972 1.21545 2.91809 3.09367 3.25463 3.32596 3.39276 3.44575 4.42443 4.49485 4.71406 4.96087 5.00811 5.05984 5.12012 5.25076 5.31367 5.39190 5.42748 5.53353 5.57616 5.64760 5.78734 5.90099 6.01142 6.08516 6.12385 6.13659 6.21902 6.37632 6.46319 6.52414 6.81033 7.03798 7.10448 7.17057 7.44126 7.75901 7.91172 7.93578 8.24058 8.37421 8.71875 9.07323 9.64138 11.08193 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.004275 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.908334 B = 6547.623707 C = 7258.796894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.060 3.940 15 C 0.079 3.921 16 H 0.100 0.900 17 C -0.086 4.086 18 C -0.358 4.358 19 C 0.544 3.456 20 O -0.532 6.532 21 O -0.354 6.354 22 C 0.038 3.962 23 C 0.222 3.778 24 C -0.120 4.120 25 O -0.259 6.259 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.259 0.741 32 H 0.317 0.683 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 12.299 -9.987 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.311 5.311 14 C -0.070 4.070 15 C 0.023 3.977 16 H 0.118 0.882 17 C -0.124 4.124 18 C -0.361 4.361 19 C 0.395 3.605 20 O -0.426 6.426 21 O -0.271 6.271 22 C -0.057 4.057 23 C 0.168 3.832 24 C -0.175 4.175 25 O -0.167 6.167 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.559 12.047 -10.283 16.482 hybrid contribution 0.081 0.319 0.872 0.932 sum -4.478 12.366 -9.411 16.172 Atomic orbital electron populations 1.21884 0.99610 0.99805 0.99455 1.21770 0.91191 1.00289 1.03184 1.19167 0.95561 0.89995 0.84042 0.98059 1.21215 0.91198 1.36316 1.04369 0.92024 1.24951 0.98108 0.95623 0.95831 1.69871 1.34721 1.39469 1.09655 0.86563 0.85843 0.77332 0.78074 1.20911 1.21345 1.19869 1.60646 1.36215 1.00941 1.33336 1.22186 1.01701 0.91395 0.91705 1.23956 0.88517 0.94662 0.90522 0.88173 1.21493 0.97479 0.93134 1.00305 1.19381 1.10291 0.90993 1.15414 1.18527 0.79539 0.85205 0.77198 1.90790 1.29656 1.85359 1.36819 1.86203 1.58837 1.16156 1.65912 1.22799 1.00703 0.80489 1.01700 1.22205 0.88969 0.84815 0.87184 1.21137 0.93716 1.05409 0.97266 1.86918 1.45640 1.27410 1.56707 0.94332 0.93920 0.94622 0.93941 0.88212 0.93100 0.86592 0.89769 0.94335 0.89353 0.89932 0.92504 0.92372 0.88497 0.88466 0.89990 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.63 37.16 0.36 -2.44 16 2 C -0.13 -2.90 5.35 -26.73 -0.14 -3.05 16 3 C 0.22 5.33 2.03 -68.87 -0.14 5.19 16 4 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 5 C -0.49 -13.49 8.60 -34.44 -0.30 -13.79 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.32 11.29 55.43 0.63 -24.69 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -13.90 6.20 -107.95 -0.67 -14.57 16 14 C 0.06 1.07 5.01 -3.82 -0.02 1.05 16 15 C 0.08 1.14 4.12 -26.12 -0.11 1.03 16 16 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 17 C -0.09 -1.13 6.43 -26.91 -0.17 -1.31 16 18 C -0.36 -5.21 6.06 -104.52 -0.63 -5.84 16 19 C 0.54 8.01 7.71 32.00 0.25 8.26 16 20 O -0.53 -8.43 13.79 -19.39 -0.27 -8.70 16 21 O -0.35 -4.65 10.26 -41.11 -0.42 -5.07 16 22 C 0.04 0.36 10.45 101.05 1.06 1.42 16 23 C 0.22 3.28 7.05 -35.84 -0.25 3.02 16 24 C -0.12 -1.48 9.63 36.00 0.35 -1.14 16 25 O -0.26 -4.23 10.65 -13.33 -0.14 -4.38 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.58 6.65 -51.93 -0.35 0.24 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 2.60 5.95 -51.93 -0.31 2.30 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.32 5.81 6.62 -39.29 -0.26 5.55 16 33 H 0.08 1.70 7.97 -51.93 -0.41 1.29 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.16 7.74 -51.93 -0.40 0.76 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 38 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.11 1.39 5.89 -51.92 -0.31 1.08 16 LS Contribution 344.73 15.07 5.19 5.19 Total: -1.00 -30.44 344.73 -7.19 -37.63 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.64 Total: 4.19 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 0.15 Total: -6.17 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.04 Total: -39.26 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.83 Total: -18.14 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.44 -7.19 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.847 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds