Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47023 * 2 1 4 4 N 1.46504 * 109.47246 * 119.99498 * 2 1 3 5 5 C 1.46757 * 124.34822 * 120.00223 * 4 2 1 6 6 C 1.54487 * 105.47273 * 163.00749 * 5 4 2 7 7 H 1.08998 * 110.96947 * 267.25892 * 6 5 4 8 8 C 1.53004 * 110.96986 * 143.53343 * 6 5 4 9 9 O 1.45191 * 109.47174 * 175.00297 * 8 6 5 10 10 C 1.34232 * 117.00242 * 180.02562 * 9 8 6 11 11 O 1.20822 * 119.99736 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00051 * 179.97438 * 10 9 8 13 13 C 1.52998 * 109.46973 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47348 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.54632 * 101.76407 * 25.41645 * 6 5 4 23 23 C 1.34421 * 124.34900 * 300.03111 * 4 2 1 24 24 O 1.21289 * 124.94069 * 0.38124 * 23 4 2 25 25 H 1.09003 * 109.47105 * 60.00965 * 1 2 3 26 26 H 1.09008 * 109.46778 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47700 * 299.99939 * 1 2 3 28 28 H 1.09000 * 109.47553 * 239.99592 * 2 1 3 29 29 H 1.08998 * 109.46997 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46392 * 299.99472 * 3 2 1 31 31 H 1.08996 * 109.46832 * 59.99530 * 3 2 1 32 32 H 1.08999 * 110.25055 * 44.00614 * 5 4 2 33 33 H 1.09002 * 110.24763 * 282.00394 * 5 4 2 34 34 H 1.09000 * 109.46868 * 54.99752 * 8 6 5 35 35 H 1.09006 * 109.46936 * 295.00015 * 8 6 5 36 36 H 1.09000 * 109.47333 * 60.00278 * 12 10 9 37 37 H 1.09002 * 109.47152 * 299.99750 * 12 10 9 38 38 H 1.09001 * 109.47671 * 60.00215 * 13 12 10 39 39 H 1.09006 * 109.47297 * 299.99934 * 13 12 10 40 40 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 41 41 H 1.09001 * 110.48481 * 93.88057 * 22 6 5 42 42 H 1.08998 * 110.48400 * 216.52435 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8656 -1.8886 1.1729 6 6 3.4719 -1.9923 2.5900 7 1 4.4399 -1.4936 2.6375 8 6 3.5895 -3.4531 3.0297 9 8 4.2691 -3.5196 4.3110 10 6 4.4544 -4.7393 4.8400 11 8 4.0613 -5.7188 4.2520 12 6 5.1527 -4.8868 6.1672 13 6 5.2336 -6.3688 6.5390 14 6 5.9313 -6.5164 7.8666 15 1 6.2824 -5.6407 8.3924 16 6 6.1215 -7.7692 8.4099 17 7 5.6945 -8.8355 7.7694 18 14 6.9871 -7.9521 10.0551 19 1 7.0644 -9.3903 10.4166 20 1 8.3586 -7.3912 9.9580 21 1 6.2257 -7.2201 11.0991 22 6 2.4196 -1.2419 3.4389 23 6 1.7475 -0.3084 2.4562 24 8 1.0638 0.6459 2.7610 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 3.6566 -1.7768 0.4314 33 1 2.2647 -2.7714 0.9542 34 1 4.1591 -4.0114 2.2868 35 1 2.5933 -3.8855 3.1239 36 1 4.5938 -4.3497 6.9335 37 1 6.1594 -4.4751 6.0959 38 1 5.7926 -6.9057 5.7726 39 1 4.2270 -6.7810 6.6102 40 1 5.2453 -8.7405 6.9149 41 1 1.6959 -1.9423 3.8558 42 1 2.9044 -0.6747 4.2334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847767370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = -145.037233 kcal Electronic energy + Delta-G solvation = -21925.240353 eV Core-core repulsion = 18483.565195 eV Total energy + Delta-G solvation = -3441.675158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99705 -40.03327 -37.09297 -36.36880 -35.32567 -33.94616 -31.43479 -30.84988 -28.53079 -27.56169 -26.45183 -25.02485 -22.79344 -22.35583 -21.18813 -20.12332 -19.18537 -17.60237 -17.11061 -16.97599 -16.42470 -16.18950 -15.80943 -15.32411 -14.56320 -14.35929 -14.10660 -13.98392 -13.74248 -13.61005 -13.23511 -13.07285 -12.68575 -12.48211 -12.35440 -12.25325 -12.04532 -11.78740 -11.65720 -11.61950 -11.44976 -11.24721 -10.88017 -10.54069 -10.23241 -10.22384 -10.08248 -9.92458 -9.82831 -9.08095 -8.64925 -8.36293 -6.39583 -4.10837 2.33449 2.50188 2.64973 2.94200 3.43045 3.44927 3.63780 3.95999 4.06073 4.34432 4.45644 4.53333 4.61598 4.67108 4.79676 4.93330 5.02522 5.12224 5.18594 5.25249 5.25859 5.32886 5.38277 5.40366 5.43565 5.48365 5.61034 5.74159 5.82490 5.87937 5.96044 6.01969 6.28564 6.45921 6.74246 6.79990 7.35648 7.40372 7.91021 8.04562 8.21202 8.41225 8.82815 9.62699 11.01343 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.048542 B = 0.002461 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.686748 B =11375.398128 C =11617.738266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.619 5.619 5 C 0.111 3.889 6 C -0.099 4.099 7 H 0.105 0.895 8 C 0.074 3.926 9 O -0.362 6.362 10 C 0.458 3.542 11 O -0.508 6.508 12 C -0.097 4.097 13 C 0.020 3.980 14 C -0.610 4.610 15 H 0.052 0.948 16 C 0.016 3.984 17 N -0.909 5.909 18 Si 1.071 2.929 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.287 1.287 22 C -0.150 4.150 23 C 0.521 3.479 24 O -0.529 6.529 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.272 0.728 41 H 0.107 0.893 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 18.091 -16.995 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.354 5.354 5 C -0.013 4.013 6 C -0.118 4.118 7 H 0.123 0.877 8 C 0.000 4.000 9 O -0.280 6.280 10 C 0.302 3.698 11 O -0.395 6.395 12 C -0.134 4.134 13 C -0.017 4.017 14 C -0.648 4.648 15 H 0.071 0.929 16 C -0.188 4.188 17 N -0.544 5.544 18 Si 0.899 3.101 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.190 4.190 23 C 0.309 3.691 24 O -0.405 6.405 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.342 17.228 -16.007 24.357 hybrid contribution -0.548 0.988 -1.405 1.802 sum -6.890 18.215 -17.412 26.123 Atomic orbital electron populations 1.22191 0.94628 1.02460 1.03375 1.20951 0.94559 0.93133 0.86342 1.22187 1.01305 0.95743 1.03355 1.48464 1.51626 1.28956 1.06334 1.22015 0.94213 0.88022 0.97023 1.22119 1.00322 0.95514 0.93834 0.87699 1.22828 0.97846 0.95121 0.84253 1.86549 1.71509 1.34274 1.35694 1.24770 0.76618 0.80000 0.88415 1.90632 1.47421 1.39436 1.61969 1.21617 0.99979 1.03576 0.88243 1.19139 0.97653 0.87797 0.97110 1.21973 1.42011 0.95414 1.05417 0.92927 1.25883 0.96597 0.92130 1.04216 1.70756 1.36122 1.31035 1.16504 0.83513 0.75912 0.76138 0.74517 1.20744 1.21365 1.21361 1.22472 0.98929 0.99221 0.98416 1.20927 0.79921 0.84577 0.83694 1.90696 1.39383 1.28927 1.81495 0.91437 0.92450 0.90910 0.89423 0.92440 0.91440 0.90949 0.89683 0.90552 0.90705 0.90933 0.88690 0.88713 0.96506 0.96503 0.91793 0.87533 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.20 37.15 0.34 -0.94 16 2 C 0.15 1.11 3.48 -67.93 -0.24 0.87 16 3 C -0.17 -1.24 9.20 37.16 0.34 -0.90 16 4 N -0.62 -5.28 2.83 -164.84 -0.47 -5.75 16 5 C 0.11 0.73 6.87 -3.12 -0.02 0.71 16 6 C -0.10 -0.81 3.42 -88.98 -0.30 -1.11 16 7 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 8 C 0.07 0.81 4.76 37.16 0.18 0.99 16 9 O -0.36 -5.28 10.19 -39.26 -0.40 -5.68 16 10 C 0.46 8.44 7.96 36.00 0.29 8.72 16 11 O -0.51 -10.84 15.73 -18.75 -0.29 -11.14 16 12 C -0.10 -1.91 5.75 -27.89 -0.16 -2.07 16 13 C 0.02 0.52 3.57 -27.88 -0.10 0.42 16 14 C -0.61 -17.06 9.11 -34.44 -0.31 -17.37 16 15 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 16 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 17 N -0.91 -28.06 13.65 55.43 0.76 -27.30 16 18 Si 1.07 24.92 29.90 -169.99 -5.08 19.83 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.15 -1.43 6.39 -26.74 -0.17 -1.60 16 23 C 0.52 5.77 7.41 -10.86 -0.08 5.69 16 24 O -0.53 -7.64 15.12 5.55 0.08 -7.55 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.07 0.74 6.77 -51.93 -0.35 0.39 16 28 H 0.09 0.46 8.07 -51.93 -0.42 0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.72 6.80 -51.93 -0.35 0.37 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.45 7.89 -51.93 -0.41 0.04 16 34 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 39 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 40 H 0.27 8.46 7.22 -40.82 -0.29 8.16 16 41 H 0.11 1.01 7.75 -51.93 -0.40 0.61 16 42 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -34.26 348.81 -7.38 -41.64 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.90 Total: -3.08 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.34 Total: -6.23 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.29 Total: -33.05 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.61 Total: -24.37 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.83 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.26 -7.38 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847767370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.396 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds