Wall clock time and date at job start Tue Mar 31 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 O 1.21278 * 119.99985 * 119.99692 * 12 2 1 14 14 N 1.34777 * 120.00161 * 300.00385 * 12 2 1 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 2 16 16 H 1.08996 * 109.88499 * 33.94698 * 15 14 12 17 17 C 1.53618 * 109.89363 * 272.72556 * 15 14 12 18 18 C 1.53777 * 106.07096 * 222.48594 * 17 15 14 19 19 H 1.08992 * 113.02896 * 152.10657 * 18 17 15 20 20 O 1.43836 * 109.53971 * 278.51826 * 18 17 15 21 21 C 1.43226 * 106.43210 * 140.05647 * 20 18 17 22 22 C 1.53000 * 109.50012 * 101.21543 * 21 20 18 23 23 C 1.53001 * 109.49946 * 221.23827 * 21 20 18 24 24 O 1.44400 * 109.52127 * 341.27460 * 21 20 18 25 25 C 1.43782 * 107.11984 * 359.49711 * 24 21 20 26 26 H 1.08996 * 112.36704 * 140.17289 * 25 24 21 27 27 C 1.53496 * 109.89605 * 154.99806 * 15 14 12 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 32 32 H 0.97005 * 119.99463 * 359.97438 * 14 12 2 33 33 H 1.08999 * 110.13081 * 341.63470 * 17 15 14 34 34 H 1.08992 * 110.13396 * 103.33371 * 17 15 14 35 35 H 1.08991 * 109.47449 * 59.99881 * 22 21 20 36 36 H 1.09004 * 109.46773 * 179.97438 * 22 21 20 37 37 H 1.08998 * 109.46780 * 299.99674 * 22 21 20 38 38 H 1.09005 * 109.47158 * 60.00401 * 23 21 20 39 39 H 1.08995 * 109.46765 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.47264 * 300.00118 * 23 21 20 41 41 H 1.09003 * 109.86060 * 238.97803 * 27 15 14 42 42 H 1.08998 * 109.86481 * 359.94594 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1457 -2.2877 -3.6037 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7067 -0.2500 2.4546 15 6 2.1954 -0.9402 3.6508 16 1 3.1873 -1.3510 3.4625 17 6 1.2244 -2.0659 4.0381 18 6 1.0823 -1.9978 5.5678 19 1 0.1220 -2.3706 5.9238 20 8 2.1970 -2.6655 6.1847 21 6 2.5679 -1.8720 7.3180 22 6 2.0132 -2.5112 8.5926 23 6 4.0932 -1.7934 7.4092 24 8 2.0254 -0.5416 7.1738 25 6 1.3158 -0.5069 5.9237 26 1 0.3850 0.0562 5.9906 27 6 2.2506 0.0380 4.8324 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.7096 1.1617 -3.4844 32 1 1.1492 0.5389 2.5435 33 1 0.2562 -1.9058 3.5639 34 1 1.6328 -3.0320 3.7419 35 1 2.4221 -3.5154 8.7031 36 1 2.2962 -1.9072 9.4547 37 1 0.9266 -2.5664 8.5280 38 1 4.4885 -1.3372 6.5016 39 1 4.3748 -1.1891 8.2715 40 1 4.5028 -2.7975 7.5193 41 1 3.2696 0.0998 5.2146 42 1 1.9145 1.0243 4.5127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885192033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:54 Heat of formation + Delta-G solvation = -138.206546 kcal Electronic energy + Delta-G solvation = -23289.260980 eV Core-core repulsion = 19847.882023 eV Total energy + Delta-G solvation = -3441.378957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28772 -38.89311 -36.32039 -35.31471 -33.71914 -33.18414 -31.36381 -30.13275 -28.62138 -27.61895 -26.43943 -25.12616 -22.66512 -21.50871 -21.34695 -20.36211 -19.46829 -17.27500 -16.68425 -16.27975 -16.08443 -15.58425 -15.31972 -14.88424 -14.49069 -14.26847 -13.90577 -13.50270 -13.44058 -13.05809 -12.69985 -12.57239 -12.42370 -12.37965 -12.20531 -12.15226 -11.80048 -11.68517 -11.38677 -11.05961 -11.02392 -10.86448 -10.66073 -10.65208 -10.31615 -10.24827 -9.95648 -9.71268 -8.95652 -8.59404 -8.47905 -8.30993 -6.02765 -4.05562 3.11867 3.32771 3.40320 3.48807 3.72502 3.73239 3.85969 4.25455 4.38622 4.48383 4.59130 4.71218 4.81855 4.87689 5.20867 5.25700 5.30487 5.31631 5.35157 5.40427 5.47130 5.49442 5.56832 5.63346 5.82991 5.84842 5.91191 6.01471 6.07821 6.21138 6.40193 6.61423 6.82217 6.92788 7.06741 7.11908 7.47998 7.76058 7.99906 8.15609 8.45923 9.04247 9.25653 9.60255 11.04937 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041447 B = 0.003485 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.396913 B = 8031.641854 C = 8251.082013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.519 3.481 13 O -0.544 6.544 14 N -0.742 5.742 15 C 0.148 3.852 16 H 0.091 0.909 17 C -0.131 4.131 18 C 0.053 3.947 19 H 0.095 0.905 20 O -0.362 6.362 21 C 0.250 3.750 22 C -0.168 4.168 23 C -0.157 4.157 24 O -0.373 6.373 25 C 0.054 3.946 26 H 0.120 0.880 27 C -0.147 4.147 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.395 0.605 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 -1.464 20.862 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.419 6.419 14 N -0.397 5.397 15 C 0.042 3.958 16 H 0.109 0.891 17 C -0.170 4.170 18 C -0.005 4.005 19 H 0.112 0.888 20 O -0.283 6.283 21 C 0.173 3.827 22 C -0.225 4.225 23 C -0.214 4.214 24 O -0.295 6.295 25 C -0.004 4.004 26 H 0.137 0.863 27 C -0.185 4.185 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.230 0.770 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.485 -2.113 20.695 20.808 hybrid contribution -0.156 0.021 -0.791 0.807 sum -0.641 -2.092 19.903 20.023 Atomic orbital electron populations 1.21736 0.96565 0.99762 1.00899 1.18882 0.94124 0.96839 0.89444 0.93045 1.21201 1.30807 1.12764 0.89014 0.90733 1.24952 0.95144 0.95080 0.99130 1.69879 1.37269 1.23145 1.23400 0.86411 0.78620 0.79810 0.82501 1.19551 1.21070 1.21064 1.22004 0.78299 0.84272 0.84547 1.90535 1.37819 1.26826 1.86730 1.46520 1.55337 1.32428 1.05382 1.21119 0.98667 0.91326 0.84715 0.89103 1.22625 1.01505 1.01347 0.91490 1.24218 0.90588 0.90539 0.95162 0.88771 1.88935 1.49235 1.47708 1.42378 1.23499 0.93945 0.77717 0.87490 1.22343 1.01979 1.01435 0.96788 1.22138 0.92725 1.03172 1.03391 1.89018 1.70991 1.30545 1.38898 1.24185 0.95766 0.96692 0.83762 0.86272 1.22781 1.01112 0.99821 0.94809 0.88886 0.95036 0.96942 0.93051 0.77039 0.89370 0.89493 0.90693 0.90913 0.91918 0.91301 0.90719 0.90756 0.89742 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.87 37.16 0.33 -2.63 16 2 C 0.03 0.69 2.64 -92.92 -0.25 0.45 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.17 8.37 -34.44 -0.29 -14.46 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.14 11.32 55.43 0.63 -24.52 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.52 11.62 7.14 -10.98 -0.08 11.54 16 13 O -0.54 -14.09 15.12 5.56 0.08 -14.00 16 14 N -0.74 -12.38 4.87 -53.25 -0.26 -12.64 16 15 C 0.15 2.17 3.25 -67.35 -0.22 1.95 16 16 H 0.09 1.57 7.57 -51.93 -0.39 1.18 16 17 C -0.13 -1.77 6.17 -26.01 -0.16 -1.93 16 18 C 0.05 0.60 4.51 -25.25 -0.11 0.48 16 19 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 20 O -0.36 -4.61 10.50 -58.91 -0.62 -5.23 16 21 C 0.25 2.73 1.51 -26.73 -0.04 2.69 16 22 C -0.17 -1.47 9.22 37.16 0.34 -1.13 16 23 C -0.16 -1.53 9.22 37.16 0.34 -1.18 16 24 O -0.37 -4.33 10.41 -58.91 -0.61 -4.95 16 25 C 0.05 0.57 4.61 -25.30 -0.12 0.45 16 26 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 27 C -0.15 -1.71 6.26 -26.12 -0.16 -1.87 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.40 5.61 7.72 -40.82 -0.32 5.29 16 33 H 0.09 1.16 7.98 -51.93 -0.41 0.74 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.73 7.70 -51.93 -0.40 0.33 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.02 7.49 -51.93 -0.39 0.63 16 42 H 0.08 0.86 7.59 -51.93 -0.39 0.47 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -31.70 336.28 -7.97 -39.67 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.73 Total: 3.90 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.51 Total: -4.14 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.37 Total: -37.16 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -1.15 Total: -24.18 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.70 -7.97 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885192033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.540 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds