Wall clock time and date at job start Tue Mar 31 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.50696 * 109.47197 * 239.99428 * 2 1 3 13 13 O 1.21281 * 119.99992 * 240.00246 * 12 2 1 14 14 N 1.34778 * 119.99830 * 60.00252 * 12 2 1 15 15 C 1.46506 * 119.99945 * 179.97438 * 14 12 2 16 16 H 1.08996 * 109.88372 * 325.70490 * 15 14 12 17 17 C 1.53613 * 109.89406 * 204.65571 * 15 14 12 18 18 C 1.53780 * 106.06732 * 222.48827 * 17 15 14 19 19 H 1.08995 * 112.53676 * 152.48337 * 18 17 15 20 20 O 1.43843 * 109.53980 * 278.52096 * 18 17 15 21 21 C 1.43219 * 106.43421 * 140.06058 * 20 18 17 22 22 C 1.52992 * 109.50121 * 101.21066 * 21 20 18 23 23 C 1.52994 * 109.50256 * 221.24251 * 21 20 18 24 24 O 1.43081 * 109.35263 * 341.22706 * 21 20 18 25 25 C 1.43787 * 107.83820 * 359.57086 * 24 21 20 26 26 H 1.08998 * 112.35882 * 139.73333 * 25 24 21 27 27 C 1.53496 * 109.89189 * 86.75151 * 15 14 12 28 28 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 29 29 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 30 30 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 32 32 H 0.96998 * 120.00160 * 0.02562 * 14 12 2 33 33 H 1.08996 * 110.13159 * 341.63320 * 17 15 14 34 34 H 1.08996 * 110.13067 * 103.27088 * 17 15 14 35 35 H 1.08996 * 109.47618 * 60.00139 * 22 21 20 36 36 H 1.09005 * 109.47254 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.47866 * 299.99872 * 22 21 20 38 38 H 1.09000 * 109.47476 * 59.99879 * 23 21 20 39 39 H 1.09003 * 109.47289 * 179.97438 * 23 21 20 40 40 H 1.09005 * 109.46935 * 299.99734 * 23 21 20 41 41 H 1.09006 * 109.85827 * 238.97659 * 27 15 14 42 42 H 1.08999 * 109.86440 * 0.07262 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.8119 -1.1214 4.0046 10 1 1.8378 -0.4118 5.2205 11 1 1.8268 -2.5143 4.0117 12 6 2.0323 -0.7105 -1.2304 13 8 2.7295 -1.6966 -1.1190 14 7 1.7067 -0.2501 -2.4545 15 6 2.1956 -0.9405 -3.6507 16 1 3.1900 -1.3460 -3.4643 17 6 2.2428 0.0362 -4.8353 18 6 1.6936 -0.7365 -6.0462 19 1 1.2349 -0.0814 -6.7868 20 8 2.7338 -1.5582 -6.6046 21 6 2.1190 -2.8003 -6.9658 22 6 1.8626 -2.8237 -8.4739 23 6 3.0455 -3.9577 -6.5881 24 8 0.8772 -2.9353 -6.2680 25 6 0.7053 -1.7687 -5.4452 26 1 -0.3238 -1.4093 -5.4451 27 6 1.2321 -2.0736 -4.0301 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7218 1.1708 3.4843 32 1 1.1494 0.5388 -2.5436 33 1 1.6179 0.9053 -4.6301 34 1 3.2699 0.3489 -5.0230 35 1 2.8086 -2.7189 -9.0050 36 1 1.3943 -3.7690 -8.7483 37 1 1.2017 -1.9997 -8.7431 38 1 3.2275 -3.9417 -5.5136 39 1 2.5770 -4.9028 -6.8628 40 1 3.9921 -3.8533 -7.1186 41 1 1.7614 -3.0265 -4.0266 42 1 0.4024 -2.1062 -3.3240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885192034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:58 Heat of formation + Delta-G solvation = -138.342019 kcal Electronic energy + Delta-G solvation = -23338.087075 eV Core-core repulsion = 19896.702243 eV Total energy + Delta-G solvation = -3441.384832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33040 -38.90024 -36.34720 -35.31279 -33.71416 -33.17506 -31.35008 -30.13053 -28.60151 -27.60457 -26.44596 -25.12016 -22.67753 -21.57044 -21.36288 -20.36275 -19.34000 -17.41592 -16.65061 -16.23067 -16.01345 -15.66911 -15.33007 -14.91880 -14.50280 -14.22321 -13.88381 -13.47056 -13.41326 -13.05610 -12.70968 -12.57789 -12.44675 -12.33528 -12.17431 -12.10279 -11.83471 -11.63160 -11.38113 -11.17025 -10.99180 -10.78079 -10.70631 -10.62062 -10.30880 -10.23418 -9.95250 -9.69737 -8.97718 -8.58717 -8.46697 -8.30418 -6.02256 -4.05175 3.11474 3.37258 3.39455 3.45077 3.72257 3.77444 3.85593 4.22062 4.38080 4.48449 4.61894 4.73233 4.83792 4.94015 5.19463 5.26828 5.30960 5.32164 5.34714 5.40231 5.46686 5.50367 5.57675 5.67903 5.85127 5.86655 5.93747 6.01343 6.10847 6.27784 6.40171 6.61648 6.82648 6.93101 7.11285 7.12806 7.48213 7.76201 7.99892 8.15667 8.46175 9.03717 9.25841 9.60477 11.05480 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.037637 B = 0.003594 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.778422 B = 7788.949245 C = 8068.676326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.519 3.481 13 O -0.544 6.544 14 N -0.742 5.742 15 C 0.147 3.853 16 H 0.091 0.909 17 C -0.126 4.126 18 C 0.051 3.949 19 H 0.096 0.904 20 O -0.365 6.365 21 C 0.254 3.746 22 C -0.168 4.168 23 C -0.159 4.159 24 O -0.374 6.374 25 C 0.056 3.944 26 H 0.119 0.881 27 C -0.149 4.149 28 H 0.092 0.908 29 H 0.012 0.988 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.395 0.605 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 -1.686 -20.728 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.540 4.540 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.419 6.419 14 N -0.397 5.397 15 C 0.041 3.959 16 H 0.109 0.891 17 C -0.164 4.164 18 C -0.007 4.007 19 H 0.114 0.886 20 O -0.286 6.286 21 C 0.177 3.823 22 C -0.226 4.226 23 C -0.216 4.216 24 O -0.295 6.295 25 C -0.001 4.001 26 H 0.137 0.863 27 C -0.188 4.188 28 H 0.111 0.889 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.229 0.771 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.740 -2.436 -20.514 20.672 hybrid contribution -0.088 0.071 0.749 0.758 sum -0.828 -2.365 -19.765 19.923 Atomic orbital electron populations 1.21734 0.96575 0.99765 1.00861 1.18867 0.94108 0.96823 0.89402 0.93031 1.21115 1.31051 1.12735 0.89051 0.90861 1.24945 0.95142 0.95049 0.99100 1.69863 1.37389 1.22850 1.23624 0.86512 0.79301 0.79722 0.81640 1.20197 1.21394 1.20195 1.21997 0.78291 0.84273 0.84530 1.90532 1.37845 1.26835 1.86737 1.46505 1.55310 1.32461 1.05380 1.21128 0.98560 0.91421 0.84788 0.89125 1.22435 1.03460 0.98196 0.92356 1.24167 0.87888 0.93565 0.95031 0.88601 1.88899 1.32711 1.25414 1.81557 1.23245 0.81785 0.85558 0.91685 1.22362 1.02799 1.03140 0.94290 1.22167 0.99162 0.96881 1.03412 1.88730 1.39033 1.41844 1.59859 1.24338 1.00390 0.84046 0.91343 0.86329 1.23011 1.00457 1.00286 0.95091 0.88932 0.96934 0.95036 0.92932 0.77091 0.89317 0.89334 0.90756 0.90884 0.91983 0.91140 0.90689 0.90869 0.90048 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 2 C 0.03 0.72 2.63 -92.92 -0.24 0.47 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.26 8.37 -34.44 -0.29 -14.54 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.20 11.34 55.43 0.63 -24.57 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.66 7.14 -10.99 -0.08 11.58 16 13 O -0.54 -14.15 15.12 5.56 0.08 -14.07 16 14 N -0.74 -12.38 4.85 -53.25 -0.26 -12.63 16 15 C 0.15 2.16 3.23 -67.35 -0.22 1.94 16 16 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 17 C -0.13 -1.38 6.17 -26.01 -0.16 -1.54 16 18 C 0.05 0.54 4.51 -25.25 -0.11 0.42 16 19 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 20 O -0.36 -4.45 10.50 -59.02 -0.62 -5.07 16 21 C 0.25 2.87 1.50 -26.74 -0.04 2.83 16 22 C -0.17 -1.49 9.22 37.15 0.34 -1.15 16 23 C -0.16 -1.68 9.22 37.15 0.34 -1.33 16 24 O -0.37 -4.72 10.30 -59.02 -0.61 -5.33 16 25 C 0.06 0.65 4.66 -25.11 -0.12 0.53 16 26 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 27 C -0.15 -2.12 6.30 -25.93 -0.16 -2.28 16 28 H 0.09 2.32 6.09 -51.93 -0.32 2.00 16 29 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 5.54 7.70 -40.82 -0.31 5.23 16 33 H 0.09 0.79 7.62 -51.93 -0.40 0.39 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.85 7.69 -51.93 -0.40 0.45 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.27 7.48 -51.93 -0.39 0.88 16 42 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -31.89 336.20 -7.96 -39.85 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.73 Total: 4.02 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.50 Total: -4.18 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.37 Total: -37.21 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -1.14 Total: -24.47 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.89 -7.96 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885192034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.492 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds