Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 116.99747 * 2 1 4 4 O 1.20823 * 120.00011 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99974 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.45934 * 59.97347 * 5 3 2 7 7 C 1.53045 * 109.45850 * 300.00055 * 5 3 2 8 8 C 1.53190 * 109.30883 * 178.62780 * 7 5 3 9 9 N 1.46926 * 108.77819 * 54.63845 * 8 7 5 10 10 C 1.34776 * 120.63270 * 126.36665 * 9 8 7 11 11 O 1.21281 * 119.99819 * 184.54866 * 10 9 8 12 12 C 1.50696 * 120.00175 * 4.55197 * 10 9 8 13 13 H 1.09007 * 109.46706 * 322.21649 * 12 10 9 14 14 C 1.53000 * 109.47131 * 82.21021 * 12 10 9 15 15 C 1.50693 * 109.47124 * 202.21468 * 12 10 9 16 16 H 1.08006 * 120.00394 * 0.02562 * 15 12 10 17 17 C 1.37877 * 119.99905 * 179.97438 * 15 12 10 18 18 N 1.31508 * 120.00332 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00025 * 180.27666 * 17 15 12 20 20 H 1.48502 * 109.47267 * 179.72424 * 19 17 15 21 21 H 1.48509 * 109.46954 * 299.72393 * 19 17 15 22 22 H 1.48498 * 109.47260 * 59.72159 * 19 17 15 23 23 C 1.46932 * 118.73567 * 306.64050 * 9 8 7 24 24 H 1.09004 * 109.58664 * 293.57194 * 23 9 8 25 25 C 1.52996 * 109.58727 * 173.14398 * 23 9 8 26 26 C 1.52762 * 109.00711 * 53.31011 * 23 9 8 27 27 H 1.08996 * 109.47121 * 299.99655 * 1 2 3 28 28 H 1.08999 * 109.47074 * 60.00119 * 1 2 3 29 29 H 1.09001 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.49662 * 58.67799 * 7 5 3 31 31 H 1.08997 * 109.52044 * 298.59267 * 7 5 3 32 32 H 1.08999 * 109.58890 * 294.84556 * 8 7 5 33 33 H 1.09003 * 109.58861 * 174.42152 * 8 7 5 34 34 H 1.09004 * 109.46937 * 186.11892 * 14 12 10 35 35 H 1.08992 * 109.47597 * 306.12194 * 14 12 10 36 36 H 1.09007 * 109.46744 * 66.12414 * 14 12 10 37 37 H 0.97003 * 120.00680 * 180.02562 * 18 17 15 38 38 H 1.09006 * 109.47282 * 63.12037 * 25 23 9 39 39 H 1.08996 * 109.47482 * 183.11416 * 25 23 9 40 40 H 1.08996 * 109.47234 * 303.11872 * 25 23 9 41 41 H 1.08999 * 109.56295 * 185.55162 * 26 23 9 42 42 H 1.08992 * 109.38698 * 65.51606 * 26 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9562 0.7802 -0.8890 7 6 4.1127 0.5814 1.2506 8 6 5.6436 0.6336 1.2306 9 7 6.0672 2.0327 1.0830 10 6 6.9326 2.5840 1.9568 11 8 7.2109 3.7615 1.8735 12 6 7.5543 1.7375 3.0374 13 1 6.8173 1.0265 3.4111 14 6 8.7516 0.9769 2.4639 15 6 8.0155 2.6229 4.1663 16 1 7.8723 3.6918 4.1074 17 6 8.6193 2.0683 5.2748 18 7 8.7923 0.7667 5.3473 19 14 9.1840 3.1651 6.6776 20 1 9.7913 2.3303 7.7451 21 1 10.1906 4.1340 6.1740 22 1 8.0192 3.9031 7.2287 23 6 5.5248 2.8211 -0.0320 24 1 5.8896 2.4173 -0.9765 25 6 5.9645 4.2797 0.1096 26 6 3.9995 2.7428 -0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7842 -0.4579 1.2630 31 1 3.7429 1.0905 2.1406 32 1 6.0182 0.0478 0.3912 33 1 6.0353 0.2299 2.1643 34 1 9.1345 0.2838 3.2131 35 1 8.4392 0.4205 1.5803 36 1 9.5342 1.6845 2.1900 37 1 9.2168 0.3765 6.1274 38 1 7.0507 4.3401 0.0403 39 1 5.5162 4.8733 -0.6870 40 1 5.6402 4.6647 1.0763 41 1 3.5905 3.2419 -0.8795 42 1 3.6304 3.2321 0.9002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886372073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -117.223884 kcal Electronic energy + Delta-G solvation = -23547.075221 eV Core-core repulsion = 20106.606140 eV Total energy + Delta-G solvation = -3440.469081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.88003 -39.70455 -37.12352 -36.35700 -34.09682 -32.77648 -32.42755 -30.11742 -28.20679 -27.30436 -25.17196 -25.00471 -23.04608 -22.35992 -21.05753 -20.13646 -18.29643 -17.61879 -16.78186 -16.50688 -16.29580 -15.83055 -15.35931 -14.78760 -14.50074 -14.22647 -13.97362 -13.81515 -13.20529 -12.83212 -12.64965 -12.52881 -12.30783 -12.18327 -11.99043 -11.76065 -11.48718 -11.35994 -11.00422 -10.95378 -10.86943 -10.75090 -10.71965 -10.63098 -10.53767 -10.39335 -10.16758 -9.92997 -8.95677 -8.42859 -8.03851 -7.92641 -6.03494 -4.05924 2.07471 2.55383 3.36122 3.38726 3.43277 3.59959 3.71535 4.46022 4.47539 4.66295 4.68300 4.88739 4.96308 5.09256 5.10701 5.29563 5.30329 5.35685 5.40897 5.62298 5.65815 5.73073 5.85074 5.96668 6.09412 6.10488 6.19583 6.22313 6.27222 6.56298 6.66803 6.83249 6.84669 6.99299 7.22080 7.45889 7.61133 7.75949 7.98231 8.10338 8.39238 8.99849 9.25713 9.58973 11.04330 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.004379 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.691165 B = 6392.268325 C = 6823.357011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.507 6.507 5 C -0.077 4.077 6 H 0.109 0.891 7 C -0.127 4.127 8 C 0.110 3.890 9 N -0.625 5.625 10 C 0.523 3.477 11 O -0.536 6.536 12 C 0.029 3.971 13 H 0.048 0.952 14 C -0.127 4.127 15 C -0.501 4.501 16 H 0.069 0.931 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.899 3.101 20 H -0.288 1.288 21 H -0.276 1.276 22 H -0.277 1.277 23 C 0.145 3.855 24 H 0.063 0.937 25 C -0.131 4.131 26 C -0.115 4.115 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.011 0.989 36 H 0.034 0.966 37 H 0.261 0.739 38 H 0.076 0.924 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.244 -5.057 -11.973 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.394 6.394 5 C -0.096 4.096 6 H 0.127 0.873 7 C -0.165 4.165 8 C -0.013 4.013 9 N -0.362 5.362 10 C 0.315 3.685 11 O -0.412 6.412 12 C 0.008 3.992 13 H 0.065 0.935 14 C -0.185 4.185 15 C -0.539 4.539 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.535 5.535 19 Si 0.727 3.273 20 H -0.214 1.214 21 H -0.202 1.202 22 H -0.203 1.203 23 C 0.041 3.959 24 H 0.081 0.919 25 C -0.188 4.188 26 C -0.153 4.153 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.030 0.970 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.232 -4.243 -11.872 17.566 hybrid contribution -0.124 0.414 0.691 0.815 sum -12.355 -3.829 -11.181 17.098 Atomic orbital electron populations 1.23250 0.76611 1.03594 1.02470 1.86523 1.23223 1.33640 1.84101 1.23960 0.92158 0.81184 0.71819 1.90661 1.67213 1.36421 1.45097 1.21137 0.86409 0.99901 1.02188 0.87279 1.21977 0.97053 1.01302 0.96213 1.21734 0.92481 0.83080 1.04019 1.48449 1.46795 1.11909 1.29047 1.21939 0.76453 0.88757 0.81310 1.90579 1.61516 1.16854 1.72253 1.18927 0.94682 0.94680 0.90865 0.93463 1.21679 0.98377 1.00031 0.98408 1.21056 1.38376 0.94069 1.00410 0.91244 1.24917 0.95738 0.95090 0.98288 1.69862 1.44078 1.09869 1.29716 0.86538 0.79059 0.80359 0.81370 1.21369 1.20175 1.20270 1.21049 0.91329 0.93740 0.89745 0.91871 1.22174 1.02807 0.92605 1.01247 1.21900 0.96320 0.93034 1.04087 0.91912 0.92064 0.88139 0.89500 0.90670 0.91727 0.87540 0.89229 0.96955 0.94656 0.92917 0.90508 0.94918 0.90963 0.90391 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.93 10.44 -39.26 -0.41 -4.34 16 3 C 0.47 5.86 7.25 36.01 0.26 6.12 16 4 O -0.51 -7.73 15.73 -18.75 -0.29 -8.02 16 5 C -0.08 -0.89 2.59 -91.73 -0.24 -1.13 16 6 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 7 C -0.13 -1.53 5.30 -26.61 -0.14 -1.67 16 8 C 0.11 1.54 5.98 -3.71 -0.02 1.52 16 9 N -0.63 -10.81 2.98 -165.47 -0.49 -11.30 16 10 C 0.52 11.61 6.74 -10.99 -0.07 11.53 16 11 O -0.54 -13.22 11.14 5.56 0.06 -13.16 16 12 C 0.03 0.71 1.81 -92.93 -0.17 0.54 16 13 H 0.05 1.15 6.21 -51.93 -0.32 0.83 16 14 C -0.13 -2.91 8.83 37.16 0.33 -2.58 16 15 C -0.50 -13.96 8.34 -34.44 -0.29 -14.25 16 16 H 0.07 2.04 6.97 -52.48 -0.37 1.68 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 18 N -0.90 -24.71 11.39 55.43 0.63 -24.07 16 19 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.14 2.17 3.47 -67.82 -0.24 1.93 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.13 -2.20 7.59 37.16 0.28 -1.91 16 26 C -0.11 -1.53 3.92 -26.83 -0.11 -1.64 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.11 1.66 5.42 -51.93 -0.28 1.38 16 34 H 0.09 2.22 6.26 -51.93 -0.33 1.89 16 35 H 0.01 0.23 7.81 -51.93 -0.41 -0.18 16 36 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.08 1.45 6.65 -51.93 -0.35 1.10 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 1.40 6.85 -51.93 -0.36 1.04 16 41 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 42 H 0.08 1.19 8.13 -51.93 -0.42 0.77 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -31.49 332.23 -6.55 -38.04 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.60 Total: -0.17 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 0.57 Total: 1.39 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.14 Total: -35.37 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.64 Total: -25.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.49 -6.55 -38.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886372073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.186 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds