Wall clock time and date at job start Tue Mar 31 2020 06:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.46891 * 2 1 4 4 C 1.46902 * 110.99743 * 299.01530 * 3 2 1 5 5 C 1.50695 * 109.47278 * 293.95679 * 4 3 2 6 6 H 1.08004 * 120.00117 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99989 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00022 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00005 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47148 * 59.99887 * 9 7 5 11 11 H 1.48502 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47312 * 299.99985 * 9 7 5 13 13 C 1.46891 * 111.00513 * 62.97297 * 3 2 1 14 14 C 1.50699 * 109.47114 * 71.54740 * 13 3 2 15 15 C 1.34444 * 125.74029 * 89.28010 * 14 13 3 16 16 C 1.41445 * 106.90197 * 180.02562 * 15 14 13 17 17 C 1.35135 * 106.78407 * 359.97438 * 16 15 14 18 18 O 1.35777 * 125.83368 * 180.02562 * 17 16 15 19 19 C 1.42903 * 116.99586 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47246 * 179.97438 * 19 18 17 21 21 O 1.42900 * 109.47041 * 64.99565 * 20 19 18 22 22 C 1.42900 * 114.00102 * 179.97438 * 21 20 19 23 23 O 1.34322 * 108.32063 * 359.73880 * 17 16 15 24 24 H 1.09005 * 109.46937 * 178.83769 * 1 2 3 25 25 H 1.08996 * 109.47093 * 298.84095 * 1 2 3 26 26 H 1.09007 * 109.46737 * 58.84111 * 1 2 3 27 27 H 1.08999 * 109.47403 * 239.99204 * 2 1 3 28 28 H 1.09002 * 109.46648 * 119.99476 * 2 1 3 29 29 H 1.08998 * 109.46887 * 53.96199 * 4 3 2 30 30 H 1.09002 * 109.46811 * 173.95412 * 4 3 2 31 31 H 0.96996 * 120.00063 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47738 * 191.55198 * 13 3 2 33 33 H 1.09003 * 109.47214 * 311.54953 * 13 3 2 34 34 H 1.07999 * 126.54720 * 359.95606 * 15 14 13 35 35 H 1.07994 * 126.61178 * 180.02562 * 16 15 14 36 36 H 1.09000 * 109.47035 * 299.99863 * 19 18 17 37 37 H 1.08996 * 109.47296 * 59.99662 * 19 18 17 38 38 H 1.08997 * 109.47499 * 185.00077 * 20 19 18 39 39 H 1.09009 * 109.47127 * 305.00229 * 20 19 18 40 40 H 1.08998 * 109.47305 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47435 * 300.00743 * 22 21 20 42 42 H 1.08999 * 109.47059 * 60.00132 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5679 2.1030 -1.1993 5 6 2.2099 1.4957 -2.4200 6 1 2.8856 0.6597 -2.3154 7 6 1.9338 2.0068 -3.6705 8 7 1.1106 3.0245 -3.7980 9 14 2.7290 1.2536 -5.1837 10 1 2.3413 -0.1763 -5.2869 11 1 2.2714 1.9787 -6.3962 12 1 4.2059 1.3590 -5.0712 13 6 1.6076 2.0891 1.2215 14 6 2.3897 1.5583 2.3953 15 6 3.5749 2.0254 2.8251 16 6 3.9444 1.2422 3.9435 17 6 2.9567 0.3392 4.1310 18 8 2.9185 -0.6064 5.1047 19 6 1.7785 -1.4677 5.1281 20 6 1.9126 -2.4600 6.2849 21 8 1.8774 -1.7524 7.5259 22 6 1.9953 -2.5912 8.6768 23 8 2.0164 0.5411 3.1934 24 1 -0.3633 -1.0275 -0.0208 25 1 -0.3633 0.4957 0.9002 26 1 -0.3633 0.5318 -0.8795 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.4838 2.0256 -1.2823 30 1 1.8524 3.1525 -1.1232 31 1 0.9161 3.3838 -4.6777 32 1 1.8007 3.1559 1.1088 33 1 0.5430 1.9287 1.3919 34 1 4.1378 2.8417 2.3973 35 1 4.8423 1.3465 4.5344 36 1 0.8757 -0.8719 5.2628 37 1 1.7163 -2.0138 4.1868 38 1 1.0888 -3.1729 6.2495 39 1 2.8590 -2.9939 6.1978 40 1 1.9594 -1.9790 9.5778 41 1 1.1729 -3.3065 8.6909 42 1 2.9431 -3.1282 8.6395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891577344.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:17 Heat of formation + Delta-G solvation = -60.466922 kcal Electronic energy + Delta-G solvation = -22311.496879 eV Core-core repulsion = 18873.488965 eV Total energy + Delta-G solvation = -3438.007914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.37617 -38.95015 -37.70429 -37.14200 -32.91233 -32.62075 -31.24471 -30.09346 -28.93629 -26.83125 -26.38621 -24.46684 -23.34320 -22.91058 -21.53964 -20.52353 -19.30170 -18.55878 -17.28918 -16.41968 -16.29389 -16.02608 -15.80459 -15.14830 -15.05283 -14.86812 -14.38881 -14.12773 -13.88786 -13.11657 -12.96921 -12.70888 -12.63466 -12.44639 -12.05786 -11.92020 -11.81785 -11.77275 -11.36503 -11.24738 -11.07943 -10.93816 -10.74583 -10.54206 -10.10296 -10.05878 -9.87299 -9.52329 -9.24374 -8.43737 -7.66186 -7.23340 -6.03163 -4.04006 2.05964 2.55943 2.95226 3.32678 3.33836 3.35055 3.37842 3.41319 4.43188 4.52436 4.72802 4.88431 4.95577 5.01155 5.05672 5.08889 5.21645 5.25497 5.31639 5.33000 5.33419 5.69331 5.80778 5.86850 5.96754 6.04901 6.11973 6.15638 6.30169 6.45268 6.65519 6.71056 6.80152 6.87882 7.06480 7.25823 7.38523 7.53278 7.78084 8.05100 8.16733 8.51190 9.02792 9.59822 11.07508 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032237 B = 0.003065 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.368970 B = 9132.796817 C = 9413.874800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.062 3.938 3 N -0.530 5.530 4 C 0.189 3.811 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.128 3.872 14 C 0.004 3.996 15 C -0.172 4.172 16 C -0.228 4.228 17 C 0.166 3.834 18 O -0.262 6.262 19 C 0.057 3.943 20 C 0.063 3.937 21 O -0.385 6.385 22 C 0.031 3.969 23 O -0.205 6.205 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.002 0.998 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 -9.310 20.067 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.067 4.067 3 N -0.254 5.254 4 C 0.065 3.935 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.000 4.000 14 C -0.044 4.044 15 C -0.192 4.192 16 C -0.248 4.248 17 C 0.073 3.927 18 O -0.177 6.177 19 C -0.018 4.018 20 C -0.013 4.013 21 O -0.304 6.304 22 C -0.066 4.066 23 O -0.106 6.106 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.020 0.980 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.433 -9.196 20.031 22.045 hybrid contribution -0.517 -0.756 -0.813 1.224 sum -0.084 -9.952 19.218 21.642 Atomic orbital electron populations 1.22382 0.99294 1.01111 1.01929 1.21958 0.92157 0.91240 1.01303 1.62364 1.59417 1.02119 1.01513 1.19821 0.94485 0.93892 0.85311 1.21086 1.26751 1.16331 0.90218 0.91947 1.24966 0.95370 0.95143 0.99057 1.69940 1.35609 1.24509 1.23797 0.86567 0.79809 0.79133 0.81942 1.20340 1.21396 1.20151 1.20586 0.95458 0.98091 0.85844 1.22330 0.97785 0.89593 0.94710 1.21321 0.96538 1.03603 0.97775 1.20735 1.01247 0.99384 1.03456 1.20245 0.90228 0.94206 0.88053 1.86478 1.42956 1.43079 1.45194 1.22807 0.88490 0.92237 0.98243 1.22583 1.01783 0.93526 0.83420 1.87977 1.94707 1.34089 1.13637 1.22764 0.99921 0.95343 0.88530 1.83911 1.43641 1.46999 1.36014 0.93402 0.93725 0.91055 0.89975 0.93207 0.98023 0.95134 0.92873 0.88184 0.93646 0.82957 0.83343 0.90734 0.89881 0.90810 0.91843 0.89432 0.94032 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 9.28 37.16 0.34 -3.07 16 2 C 0.06 1.22 5.73 -3.82 -0.02 1.20 16 3 N -0.53 -11.34 4.65 -237.52 -1.10 -12.45 16 4 C 0.19 4.76 4.49 -4.98 -0.02 4.74 16 5 C -0.51 -13.92 8.50 -34.44 -0.29 -14.21 16 6 H 0.06 1.72 7.11 -52.48 -0.37 1.35 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.13 2.34 5.37 -4.98 -0.03 2.31 16 14 C 0.00 0.08 6.08 -35.65 -0.22 -0.14 16 15 C -0.17 -2.80 10.80 -39.70 -0.43 -3.23 16 16 C -0.23 -3.53 10.94 -39.47 -0.43 -3.96 16 17 C 0.17 2.63 7.87 29.63 0.23 2.86 16 18 O -0.26 -3.73 10.17 -45.74 -0.47 -4.19 16 19 C 0.06 0.62 6.07 37.16 0.23 0.85 16 20 C 0.06 0.55 6.32 37.16 0.23 0.78 16 21 O -0.39 -4.07 10.67 -40.09 -0.43 -4.50 16 22 C 0.03 0.21 11.01 101.05 1.11 1.32 16 23 O -0.20 -3.45 9.63 -18.21 -0.18 -3.62 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.76 6.30 -51.93 -0.33 0.43 16 26 H 0.07 1.46 6.24 -51.93 -0.32 1.14 16 27 H 0.08 1.75 6.83 -51.93 -0.35 1.39 16 28 H 0.05 0.93 6.97 -51.93 -0.36 0.57 16 29 H 0.00 0.05 6.00 -51.93 -0.31 -0.26 16 30 H 0.03 0.82 7.87 -51.93 -0.41 0.41 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.10 1.73 7.82 -51.93 -0.41 1.33 16 33 H 0.05 0.80 5.91 -51.93 -0.31 0.49 16 34 H 0.15 2.25 8.06 -52.49 -0.42 1.82 16 35 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -31.11 347.81 -7.14 -38.25 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.54 Total: -0.66 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 0.61 Total: -9.07 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.37 Total: -37.93 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.07 Total: -12.31 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.11 -7.14 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891577344.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.212 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds