Wall clock time and date at job start Tue Mar 31 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00117 * 2 1 4 4 C 1.53003 * 109.47301 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.46764 * 65.00143 * 4 3 2 6 6 C 1.35779 * 116.99728 * 180.02562 * 5 4 3 7 7 C 1.35124 * 125.83693 * 179.97438 * 6 5 4 8 8 C 1.41452 * 106.78589 * 180.02562 * 7 6 5 9 9 C 1.34431 * 106.90024 * 0.02562 * 8 7 6 10 10 C 1.50698 * 125.74364 * 179.97438 * 9 8 7 11 11 N 1.46896 * 109.47388 * 89.99626 * 10 9 8 12 12 C 1.46902 * 110.99844 * 293.95432 * 11 10 9 13 13 C 1.46901 * 111.00207 * 170.00320 * 11 10 9 14 14 H 1.09002 * 109.46876 * 59.99683 * 13 11 10 15 15 C 1.53006 * 109.46989 * 300.00016 * 13 11 10 16 16 C 1.50701 * 109.47355 * 179.97438 * 13 11 10 17 17 H 1.08002 * 119.99503 * 5.52869 * 16 13 11 18 18 C 1.37877 * 120.00016 * 185.52970 * 16 13 11 19 19 N 1.31511 * 119.99886 * 8.91967 * 18 16 13 20 20 Si 1.86797 * 119.99899 * 188.92070 * 18 16 13 21 21 H 1.48507 * 109.47266 * 84.99252 * 20 18 16 22 22 H 1.48501 * 109.47065 * 204.99462 * 20 18 16 23 23 H 1.48496 * 109.47250 * 324.99523 * 20 18 16 24 24 O 1.34325 * 125.84193 * 0.02562 * 6 5 4 25 25 H 1.08996 * 109.47122 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47189 * 300.00000 * 1 2 3 27 27 H 1.09002 * 109.46538 * 59.99787 * 1 2 3 28 28 H 1.09008 * 109.47035 * 60.00211 * 3 2 1 29 29 H 1.09002 * 109.47321 * 300.00185 * 3 2 1 30 30 H 1.09002 * 109.46802 * 305.00591 * 4 3 2 31 31 H 1.08993 * 109.47335 * 185.00105 * 4 3 2 32 32 H 1.07993 * 126.60643 * 0.02803 * 7 6 5 33 33 H 1.08007 * 126.54719 * 179.73744 * 8 7 6 34 34 H 1.09001 * 109.47247 * 210.00313 * 10 9 8 35 35 H 1.09002 * 109.46894 * 329.99699 * 10 9 8 36 36 H 1.08998 * 109.46692 * 60.00323 * 12 11 10 37 37 H 1.09007 * 109.46915 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.47211 * 299.99792 * 12 11 10 39 39 H 1.09002 * 109.47064 * 66.09903 * 15 13 11 40 40 H 1.08999 * 109.46877 * 186.09830 * 15 13 11 41 41 H 1.08997 * 109.46906 * 306.09649 * 15 13 11 42 42 H 0.97005 * 119.99822 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2202 6 6 5.3018 0.3975 -1.3806 7 6 5.9013 -0.1550 -2.4582 8 6 7.2922 -0.1463 -2.2012 9 6 7.4620 0.4073 -0.9880 10 6 8.7832 0.6242 -0.2963 11 7 9.3135 1.9458 -0.6567 12 6 9.6526 2.0055 -2.0848 13 6 10.4739 2.2922 0.1748 14 1 11.2587 1.5495 0.0308 15 6 10.0577 2.3153 1.6470 16 6 10.9897 3.6510 -0.2233 17 1 10.4523 4.2404 -0.9516 18 6 12.1475 4.1418 0.3421 19 7 12.8951 3.3617 1.0918 20 14 12.6541 5.9147 0.0432 21 1 11.9705 6.7969 1.0229 22 1 14.1249 6.0430 0.2035 23 1 12.2698 6.3139 -1.3346 24 8 6.2535 0.7352 -0.4949 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.6887 1.8464 0.8901 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1765 0.0902 32 1 5.4126 -0.5308 -3.3449 33 1 8.0691 -0.5181 -2.8530 34 1 8.6412 0.5716 0.7831 35 1 9.4874 -0.1472 -0.6081 36 1 8.7590 1.8136 -2.6787 37 1 10.0424 2.9948 -2.3247 38 1 10.4077 1.2525 -2.3106 39 1 9.7874 1.3080 1.9641 40 1 10.8880 2.6767 2.2537 41 1 9.2011 2.9777 1.7720 42 1 13.7098 3.7069 1.4892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891935280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:00 Heat of formation + Delta-G solvation = -57.363001 kcal Electronic energy + Delta-G solvation = -22281.367082 eV Core-core repulsion = 18843.493764 eV Total energy + Delta-G solvation = -3437.873318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.38301 -38.92261 -37.66236 -36.96865 -33.15287 -32.61030 -31.10634 -29.80379 -28.80759 -26.76530 -26.14339 -24.59802 -23.42895 -22.83208 -21.52761 -20.36416 -19.42122 -18.56859 -17.25170 -16.47024 -16.32794 -16.00270 -15.76643 -15.41068 -14.76814 -14.49860 -14.23692 -13.90451 -13.73466 -13.20660 -13.05000 -12.67904 -12.51562 -12.44395 -12.01142 -11.87723 -11.78119 -11.76120 -11.21260 -11.08286 -11.02418 -10.71573 -10.61745 -10.21942 -10.14995 -10.07180 -9.87565 -9.54712 -8.93117 -8.46246 -7.68082 -7.22856 -6.05661 -4.06614 2.05297 2.57732 2.89248 3.31012 3.34558 3.37143 3.37801 3.40370 4.40902 4.56558 4.76829 4.92443 4.98772 5.04026 5.05356 5.13441 5.21202 5.26758 5.32278 5.34013 5.37187 5.71452 5.83508 6.01373 6.11173 6.24308 6.26715 6.41302 6.69693 6.74169 6.78092 6.81568 6.96112 7.03441 7.08734 7.39478 7.52292 7.63495 7.80183 8.08538 8.22384 8.54494 8.99997 9.57228 11.03438 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.003153 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.342004 B = 8878.231630 C = 9317.189970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.064 3.936 4 C 0.056 3.944 5 O -0.262 6.262 6 C 0.169 3.831 7 C -0.230 4.230 8 C -0.190 4.190 9 C 0.014 3.986 10 C 0.125 3.875 11 N -0.535 5.535 12 C 0.034 3.966 13 C 0.211 3.789 14 H 0.009 0.991 15 C -0.129 4.129 16 C -0.505 4.505 17 H 0.064 0.936 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.275 1.275 24 O -0.196 6.196 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.013 0.987 39 H 0.012 0.988 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.256 -6.311 -2.601 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.013 4.013 4 C -0.019 4.019 5 O -0.177 6.177 6 C 0.076 3.924 7 C -0.250 4.250 8 C -0.210 4.210 9 C -0.036 4.036 10 C -0.003 4.003 11 N -0.260 5.260 12 C -0.115 4.115 13 C 0.105 3.895 14 H 0.027 0.973 15 C -0.188 4.188 16 C -0.544 4.544 17 H 0.082 0.918 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.199 1.199 24 O -0.096 6.096 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.031 0.969 39 H 0.031 0.969 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.527 -6.032 -2.239 20.560 hybrid contribution 0.680 0.675 -0.184 0.975 sum -18.847 -5.357 -2.423 19.743 Atomic orbital electron populations 1.22762 0.80800 1.02993 1.00000 1.87976 1.19863 1.27165 1.95433 1.22589 0.91273 0.85742 1.01694 1.22837 0.93729 0.99155 0.86136 1.86470 1.13532 1.78473 1.39255 1.20259 0.80260 1.01682 0.90224 1.20674 0.93086 1.11652 0.99572 1.21324 0.95678 1.06849 0.97112 1.22321 0.83762 1.02140 0.95330 1.20579 0.86665 0.93047 1.00004 1.62132 1.35979 1.23234 1.04674 1.22291 0.98016 1.02150 0.89011 1.19294 0.84763 0.96420 0.88988 0.97348 1.21807 1.00848 0.97073 0.99026 1.21076 1.07664 1.01248 1.24400 0.91802 1.24928 0.95961 0.97691 0.95490 1.69965 1.14131 1.35044 1.33893 0.86572 0.77288 0.85209 0.78697 1.20558 1.21419 1.19950 1.83937 1.15650 1.66817 1.43184 0.89465 0.94011 0.93906 0.90752 0.91863 0.90631 0.89649 0.83357 0.83308 0.89254 0.92355 0.93320 0.90272 0.96871 0.96860 0.91118 0.94362 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.17 10.67 -40.08 -0.43 -4.59 16 3 C 0.06 0.57 6.32 37.16 0.23 0.81 16 4 C 0.06 0.64 6.07 37.16 0.23 0.87 16 5 O -0.26 -3.81 10.17 -45.74 -0.47 -4.27 16 6 C 0.17 2.73 7.87 29.62 0.23 2.96 16 7 C -0.23 -3.51 10.94 -39.47 -0.43 -3.94 16 8 C -0.19 -2.98 9.39 -39.70 -0.37 -3.35 16 9 C 0.01 0.24 6.22 -35.65 -0.22 0.02 16 10 C 0.13 2.32 5.31 -4.98 -0.03 2.30 16 11 N -0.53 -11.62 4.61 -237.72 -1.10 -12.72 16 12 C 0.03 0.68 8.99 60.07 0.54 1.22 16 13 C 0.21 5.25 1.92 -68.86 -0.13 5.12 16 14 H 0.01 0.24 8.09 -51.93 -0.42 -0.18 16 15 C -0.13 -3.07 8.70 37.16 0.32 -2.74 16 16 C -0.51 -13.70 7.66 -34.44 -0.26 -13.96 16 17 H 0.06 1.74 6.66 -52.49 -0.35 1.39 16 18 C 0.06 1.67 5.16 -17.82 -0.09 1.58 16 19 N -0.89 -25.29 12.14 55.43 0.67 -24.62 16 20 Si 0.89 21.20 29.55 -169.99 -5.02 16.18 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 O -0.20 -3.44 10.16 -18.22 -0.19 -3.63 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.15 2.05 8.06 -52.48 -0.42 1.63 16 34 H 0.09 1.65 5.96 -51.93 -0.31 1.34 16 35 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 36 H 0.05 0.88 6.31 -51.93 -0.33 0.56 16 37 H 0.08 1.71 6.20 -51.93 -0.32 1.38 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.01 0.27 6.53 -51.93 -0.34 -0.07 16 40 H 0.07 1.82 6.77 -51.93 -0.35 1.47 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -30.58 346.53 -6.80 -37.38 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.63 Total: -1.14 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 1.13 Total: -7.81 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.42 Total: -37.33 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -1.08 Total: -12.49 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.58 -6.80 -37.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891935280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.984 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds