Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00188 * 2 1 4 4 C 1.53000 * 109.47230 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.46914 * 64.99719 * 4 3 2 6 6 C 1.35778 * 116.99482 * 179.97438 * 5 4 3 7 7 C 1.35128 * 125.83693 * 180.02562 * 6 5 4 8 8 C 1.41450 * 106.79354 * 180.02562 * 7 6 5 9 9 C 1.34441 * 106.89393 * 0.02562 * 8 7 6 10 10 C 1.50700 * 125.74083 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.47327 * 89.99354 * 10 9 8 12 12 C 1.46894 * 111.00123 * 293.95332 * 11 10 9 13 13 C 1.46902 * 110.99644 * 169.99950 * 11 10 9 14 14 H 1.08996 * 109.47149 * 309.99327 * 13 11 10 15 15 C 1.52997 * 109.47094 * 70.00221 * 13 11 10 16 16 C 1.50706 * 109.46577 * 190.00011 * 13 11 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47347 * 59.99862 * 20 18 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 24 24 O 1.34318 * 125.84560 * 0.31522 * 6 5 4 25 25 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47440 * 300.00662 * 1 2 3 27 27 H 1.09006 * 109.46578 * 60.00475 * 1 2 3 28 28 H 1.08999 * 109.46850 * 59.99559 * 3 2 1 29 29 H 1.08996 * 109.46684 * 299.99563 * 3 2 1 30 30 H 1.09003 * 109.47172 * 304.99663 * 4 3 2 31 31 H 1.08997 * 109.46695 * 184.99895 * 4 3 2 32 32 H 1.08007 * 126.60580 * 359.96777 * 7 6 5 33 33 H 1.07995 * 126.55526 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.46811 * 329.99349 * 10 9 8 35 35 H 1.09000 * 109.46771 * 209.99491 * 10 9 8 36 36 H 1.09007 * 109.47149 * 296.05065 * 12 11 10 37 37 H 1.09002 * 109.47016 * 56.04488 * 12 11 10 38 38 H 1.08993 * 109.47669 * 176.04501 * 12 11 10 39 39 H 1.09002 * 109.47153 * 299.99508 * 15 13 11 40 40 H 1.09001 * 109.46832 * 179.97438 * 15 13 11 41 41 H 1.09004 * 109.47261 * 59.99681 * 15 13 11 42 42 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3019 0.3984 -1.3809 7 6 5.9015 -0.1531 -2.4589 8 6 7.2925 -0.1437 -2.2023 9 6 7.4621 0.4094 -0.9888 10 6 8.7835 0.6277 -0.2978 11 7 9.3117 1.9504 -0.6578 12 6 9.6499 2.0114 -2.0859 13 6 10.4721 2.2978 0.1734 14 1 10.2265 2.1414 1.2238 15 6 11.6583 1.4110 -0.2107 16 6 10.8335 3.7440 -0.0480 17 1 10.2590 4.3448 -0.7375 18 6 11.8984 4.2998 0.6289 19 7 12.5989 3.5678 1.4673 20 14 12.3460 6.0925 0.3550 21 1 11.1948 6.9529 0.7287 22 1 13.5199 6.4434 1.1941 23 1 12.6796 6.3064 -1.0762 24 8 6.2532 0.7322 -0.4934 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5685 0.8428 31 1 3.9784 2.1765 0.0902 32 1 5.4127 -0.5296 -3.3455 33 1 8.0697 -0.5107 -2.8562 34 1 9.4886 -0.1425 -0.6105 35 1 8.6422 0.5743 0.7816 36 1 10.4553 1.3084 -2.2989 37 1 8.7732 1.7497 -2.6784 38 1 9.9721 3.0211 -2.3403 39 1 11.3968 0.3650 -0.0505 40 1 12.5194 1.6691 0.4057 41 1 11.9038 1.5675 -1.2611 42 1 13.3483 3.9588 1.9432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891935281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = -55.486580 kcal Electronic energy + Delta-G solvation = -22268.670854 eV Core-core repulsion = 18830.878904 eV Total energy + Delta-G solvation = -3437.791950 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.38470 -38.92023 -37.67483 -37.14883 -33.15240 -32.61264 -31.12237 -29.85465 -28.00995 -26.74182 -26.07401 -25.23696 -23.58936 -22.90164 -21.52421 -20.33349 -19.25350 -18.55006 -17.24798 -16.42885 -16.27725 -15.98734 -15.76217 -15.30824 -14.86610 -14.48779 -14.27140 -13.98070 -13.62600 -13.24216 -13.03491 -12.68597 -12.65621 -12.44706 -12.03917 -11.88927 -11.76331 -11.37333 -11.21007 -11.11476 -10.96624 -10.77253 -10.69601 -10.49241 -10.06554 -10.05867 -9.86380 -9.55513 -8.93652 -8.39035 -7.69325 -7.19021 -6.01540 -4.05203 2.05211 2.58014 2.88908 3.32889 3.34907 3.36936 3.38376 3.40469 4.41727 4.57308 4.77566 4.93211 4.99379 5.04755 5.06715 5.14400 5.21220 5.29217 5.32926 5.34513 5.37682 5.71092 5.83155 6.00605 6.11037 6.23424 6.25934 6.38325 6.64546 6.73361 6.76538 6.79520 6.88711 7.04098 7.07600 7.40809 7.53402 7.69460 7.81969 8.09109 8.34618 8.54814 9.00182 9.59631 11.05488 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.003197 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.392743 B = 8756.720660 C = 9411.626502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.064 3.936 4 C 0.056 3.944 5 O -0.262 6.262 6 C 0.170 3.830 7 C -0.230 4.230 8 C -0.190 4.190 9 C 0.013 3.987 10 C 0.129 3.871 11 N -0.532 5.532 12 C 0.029 3.971 13 C 0.211 3.789 14 H 0.040 0.960 15 C -0.174 4.174 16 C -0.498 4.498 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 O -0.195 6.195 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.021 0.979 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.007 0.993 40 H 0.090 0.910 41 H 0.034 0.966 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 -6.966 -3.823 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.013 4.013 4 C -0.019 4.019 5 O -0.177 6.177 6 C 0.076 3.924 7 C -0.250 4.250 8 C -0.210 4.210 9 C -0.036 4.036 10 C 0.001 3.999 11 N -0.256 5.256 12 C -0.120 4.120 13 C 0.106 3.894 14 H 0.058 0.942 15 C -0.233 4.233 16 C -0.537 4.537 17 H 0.080 0.920 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 O -0.096 6.096 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.499 -6.668 -3.436 19.962 hybrid contribution 0.673 0.663 -0.214 0.968 sum -17.826 -6.006 -3.649 19.162 Atomic orbital electron populations 1.22761 0.80807 1.02986 1.00000 1.87975 1.19859 1.27176 1.95434 1.22589 0.91271 0.85734 1.01702 1.22840 0.93729 0.99180 0.86121 1.86468 1.13517 1.78459 1.39287 1.20262 0.80278 1.01686 0.90139 1.20673 0.93084 1.11665 0.99610 1.21314 0.95670 1.06847 0.97140 1.22339 0.83748 1.02178 0.95329 1.20503 0.86531 0.93434 0.99471 1.62349 1.35592 1.22977 1.04674 1.22329 0.98192 1.02063 0.89374 1.19353 0.83050 0.94818 0.92193 0.94206 1.22433 1.04404 0.95608 1.00892 1.21049 1.13033 0.94691 1.24903 0.91980 1.24921 0.96207 0.97988 0.95181 1.69868 1.20077 1.35843 1.27686 0.86564 0.77774 0.85032 0.78045 1.20252 1.21403 1.20357 1.83941 1.15647 1.67040 1.42948 0.89470 0.94009 0.93912 0.90739 0.91864 0.90619 0.89617 0.83357 0.83321 0.92024 0.89855 0.96064 0.93292 0.90895 0.97384 0.89177 0.94739 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.19 10.67 -40.09 -0.43 -4.62 16 3 C 0.06 0.58 6.32 37.16 0.23 0.81 16 4 C 0.06 0.65 6.07 37.16 0.23 0.87 16 5 O -0.26 -3.82 10.17 -45.74 -0.47 -4.29 16 6 C 0.17 2.74 7.87 29.63 0.23 2.98 16 7 C -0.23 -3.51 10.94 -39.47 -0.43 -3.94 16 8 C -0.19 -2.97 9.29 -39.70 -0.37 -3.34 16 9 C 0.01 0.23 6.23 -35.65 -0.22 0.01 16 10 C 0.13 2.38 5.06 -4.98 -0.03 2.35 16 11 N -0.53 -11.50 4.69 -237.73 -1.12 -12.62 16 12 C 0.03 0.57 8.58 60.06 0.52 1.08 16 13 C 0.21 5.24 2.31 -68.86 -0.16 5.08 16 14 H 0.04 1.08 7.93 -51.93 -0.41 0.67 16 15 C -0.17 -4.10 8.22 37.16 0.31 -3.79 16 16 C -0.50 -13.55 7.97 -34.44 -0.27 -13.82 16 17 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 18 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 19 N -0.90 -25.21 11.32 55.43 0.63 -24.59 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 O -0.20 -3.45 10.16 -18.22 -0.19 -3.64 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.15 1.93 8.06 -52.48 -0.42 1.50 16 33 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.06 1.07 7.06 -51.93 -0.37 0.70 16 35 H 0.08 1.53 7.93 -51.93 -0.41 1.12 16 36 H 0.02 0.40 6.21 -51.92 -0.32 0.08 16 37 H 0.05 0.87 6.09 -51.93 -0.32 0.56 16 38 H 0.07 1.54 6.86 -51.93 -0.36 1.18 16 39 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 40 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 41 H 0.03 0.78 6.33 -51.93 -0.33 0.46 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -30.35 342.95 -6.87 -37.22 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.50 Total: -0.01 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 1.05 Total: -8.88 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.49 Total: -37.20 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.08 Total: -12.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.35 -6.87 -37.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891935281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.267 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds