Wall clock time and date at job start Tue Mar 31 2020 05:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47242 * 2 1 4 4 H 1.08997 * 109.47532 * 179.82949 * 3 2 1 5 5 C 1.50699 * 109.47249 * 299.82950 * 3 2 1 6 6 H 1.07995 * 120.00417 * 119.99789 * 5 3 2 7 7 C 1.37885 * 120.00171 * 300.00066 * 5 3 2 8 8 N 1.31517 * 119.99615 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00159 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47096 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46933 * 120.00144 * 9 7 5 12 12 H 1.48499 * 109.47037 * 239.99708 * 9 7 5 13 13 N 1.46905 * 109.47312 * 59.82911 * 3 2 1 14 14 C 1.46899 * 110.99549 * 85.92908 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54171 * 14 13 3 16 16 C 1.34439 * 125.73723 * 90.00142 * 15 14 13 17 17 C 1.41450 * 106.89806 * 179.97438 * 16 15 14 18 18 C 1.35136 * 106.78679 * 0.02562 * 17 16 15 19 19 O 1.35778 * 125.83833 * 179.97438 * 18 17 16 20 20 C 1.42898 * 116.99791 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.46940 * 180.02562 * 20 19 18 22 22 O 1.42899 * 109.47403 * 65.00366 * 21 20 19 23 23 C 1.42897 * 114.00236 * 179.97438 * 22 21 20 24 24 O 1.34321 * 108.31753 * 359.73358 * 18 17 16 25 25 H 1.09001 * 109.47148 * 175.59383 * 1 2 3 26 26 H 1.08992 * 109.47241 * 55.58791 * 1 2 3 27 27 H 1.09005 * 109.46880 * 295.59105 * 1 2 3 28 28 H 1.08998 * 109.47235 * 120.00349 * 2 1 3 29 29 H 1.08999 * 109.46695 * 239.99686 * 2 1 3 30 30 H 0.96999 * 120.00240 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99901 * 209.88551 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54002 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.54678 * 14 13 3 34 34 H 1.07998 * 126.55802 * 359.96829 * 16 15 14 35 35 H 1.07998 * 126.61040 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47362 * 300.00354 * 20 19 18 37 37 H 1.09001 * 109.46942 * 60.00825 * 20 19 18 38 38 H 1.09005 * 109.46863 * 185.00066 * 21 20 19 39 39 H 1.08999 * 109.47117 * 304.99759 * 21 20 19 40 40 H 1.08999 * 109.47015 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.47429 * 300.00063 * 23 22 21 42 42 H 1.09006 * 109.46433 * 60.00083 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5412 2.1517 -1.2326 6 1 0.9200 3.0298 -1.1361 7 6 1.8778 1.6794 -2.4835 8 7 2.6338 0.6096 -2.6010 9 14 1.2588 2.5580 -4.0113 10 1 0.4329 3.7253 -3.6106 11 1 2.4159 3.0242 -4.8171 12 1 0.4364 1.6235 -4.8208 13 7 1.5470 2.1362 1.1974 14 6 2.4394 1.9094 2.3420 15 6 1.9634 2.7219 3.5186 16 6 1.0898 2.3114 4.4543 17 6 0.9293 3.3819 5.3648 18 6 1.7187 4.3878 4.9276 19 8 1.8583 5.6027 5.5176 20 6 2.7484 6.5292 4.8921 21 6 2.7752 7.8317 5.6944 22 8 3.3340 7.5841 6.9861 23 6 3.4056 8.7422 7.8202 24 8 2.3456 3.9783 3.8125 25 1 -0.3633 -1.0246 -0.0790 26 1 -0.3633 0.5807 -0.8477 27 1 -0.3633 0.4439 0.9269 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.8709 0.2775 -3.4809 31 1 1.4288 3.1225 1.0208 32 1 2.4323 0.8515 2.6042 33 1 3.4529 2.2115 2.0780 34 1 0.6032 1.3484 4.5018 35 1 0.2976 3.3933 6.2407 36 1 3.7511 6.1033 4.8578 37 1 2.4057 6.7340 3.8778 38 1 3.3839 8.5687 5.1704 39 1 1.7595 8.2116 5.8046 40 1 3.8403 8.4708 8.7822 41 1 4.0275 9.4978 7.3402 42 1 2.4030 9.1412 7.9745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893605860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:41 Heat of formation + Delta-G solvation = -71.284376 kcal Electronic energy + Delta-G solvation = -22014.183725 eV Core-core repulsion = 18575.706730 eV Total energy + Delta-G solvation = -3438.476994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.41318 -38.95183 -37.66391 -36.34496 -33.19162 -32.63826 -31.20707 -30.68043 -28.61056 -26.73719 -26.13737 -24.07190 -23.17407 -22.95747 -21.58876 -20.28050 -19.05900 -18.64114 -17.28616 -16.67741 -16.33709 -16.02498 -15.79907 -15.04646 -14.82412 -14.65327 -14.27828 -13.99662 -13.41073 -13.17251 -13.07108 -12.67717 -12.50982 -12.40270 -12.10757 -11.96393 -11.79396 -11.53380 -11.42029 -11.23531 -10.96640 -10.76833 -10.41317 -10.13130 -10.09743 -9.75830 -9.58795 -9.39081 -8.80737 -8.49926 -7.72207 -7.30111 -6.04513 -4.10025 2.00953 2.52629 2.89821 3.27026 3.30049 3.34658 3.35504 3.39425 4.38796 4.52767 4.73267 4.89244 4.96168 5.01874 5.07975 5.15882 5.22134 5.26512 5.32028 5.32131 5.46662 5.79373 5.90342 6.05099 6.12615 6.27308 6.53178 6.67260 6.71193 6.75342 6.84778 7.01910 7.22547 7.25584 7.46384 7.48970 7.73123 7.76299 7.81127 8.22350 8.32995 8.59439 8.98140 9.54760 11.01386 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.003170 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.771025 B = 8829.781557 C = 9725.429114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.214 3.786 4 H 0.003 0.997 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.679 5.679 14 C 0.142 3.858 15 C -0.006 4.006 16 C -0.170 4.170 17 C -0.230 4.230 18 C 0.170 3.830 19 O -0.262 6.262 20 C 0.056 3.944 21 C 0.064 3.936 22 O -0.385 6.385 23 C 0.031 3.969 24 O -0.205 6.205 25 H 0.014 0.986 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.011 0.989 29 H 0.088 0.912 30 H 0.260 0.740 31 H 0.334 0.666 32 H 0.096 0.904 33 H 0.036 0.964 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 11.336 16.420 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.107 3.893 4 H 0.021 0.979 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.311 5.311 14 C 0.012 3.988 15 C -0.055 4.055 16 C -0.190 4.190 17 C -0.250 4.250 18 C 0.076 3.924 19 O -0.177 6.177 20 C -0.019 4.019 21 C -0.013 4.013 22 O -0.304 6.304 23 C -0.066 4.066 24 O -0.106 6.106 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.114 0.886 33 H 0.054 0.946 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.474 10.769 16.500 19.709 hybrid contribution 0.413 1.377 -1.194 1.869 sum 0.887 12.146 15.306 19.560 Atomic orbital electron populations 1.21456 0.97419 0.97489 1.01426 1.21448 0.95149 0.98035 0.99586 1.19211 0.93111 0.91596 0.85336 0.97932 1.21200 1.31661 1.12002 0.90221 0.92209 1.24884 0.95022 0.95005 0.98934 1.69889 1.36652 1.22682 1.23464 0.86509 0.78574 0.79712 0.83041 1.19770 1.21153 1.20944 1.60866 1.48157 1.16360 1.05747 1.20445 0.94720 0.96665 0.86923 1.22418 1.01324 0.81597 1.00121 1.21324 1.01527 1.00729 0.95421 1.20747 1.07084 0.92141 1.05056 1.20262 0.97154 0.87619 0.87322 1.86479 1.63336 1.19484 1.48373 1.22833 0.94313 0.88481 0.96233 1.22583 0.98902 0.95182 0.84642 1.87975 1.83471 1.33443 1.25540 1.22766 1.00524 0.88267 0.95000 1.83909 1.57795 1.30771 1.38154 0.96707 0.92509 0.93865 0.97051 0.89398 0.92958 0.84892 0.88583 0.94597 0.82945 0.83269 0.90656 0.89748 0.90750 0.91835 0.89437 0.94005 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 2 C -0.10 -2.46 5.59 -26.73 -0.15 -2.61 16 3 C 0.21 5.23 2.30 -68.87 -0.16 5.07 16 4 H 0.00 0.08 7.71 -51.93 -0.40 -0.32 16 5 C -0.51 -13.56 7.26 -34.44 -0.25 -13.81 16 6 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -14.23 5.64 -109.22 -0.62 -14.85 16 14 C 0.14 2.56 6.06 -4.97 -0.03 2.53 16 15 C -0.01 -0.11 6.79 -35.65 -0.24 -0.35 16 16 C -0.17 -2.66 10.80 -39.70 -0.43 -3.09 16 17 C -0.23 -3.47 10.94 -39.46 -0.43 -3.90 16 18 C 0.17 2.67 7.87 29.63 0.23 2.91 16 19 O -0.26 -3.72 10.17 -45.74 -0.47 -4.18 16 20 C 0.06 0.62 6.07 37.16 0.23 0.85 16 21 C 0.06 0.56 6.32 37.16 0.23 0.79 16 22 O -0.39 -4.11 10.67 -40.08 -0.43 -4.53 16 23 C 0.03 0.21 11.01 101.05 1.11 1.32 16 24 O -0.21 -3.48 10.16 -18.21 -0.19 -3.66 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 1.36 7.07 -51.93 -0.37 0.99 16 27 H 0.04 0.91 7.74 -51.93 -0.40 0.51 16 28 H 0.01 0.24 7.60 -51.93 -0.39 -0.16 16 29 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.33 7.09 8.13 -39.29 -0.32 6.77 16 32 H 0.10 1.66 7.61 -51.93 -0.40 1.26 16 33 H 0.04 0.66 7.94 -51.93 -0.41 0.25 16 34 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -29.54 351.71 -7.18 -36.72 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.77 Total: 4.41 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 0.37 Total: -11.00 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.01 Total: -38.98 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.08 Total: -12.38 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.54 -7.18 -36.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.568 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds