Wall clock time and date at job start Tue Mar 31 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 N 1.46498 * 109.47099 * 120.00188 * 2 1 3 5 5 C 1.34775 * 120.00003 * 274.99975 * 4 2 1 6 6 O 1.21281 * 119.99955 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99857 * 179.97438 * 5 4 2 8 8 C 1.55238 * 110.46892 * 294.81226 * 7 5 4 9 9 C 1.54894 * 102.58338 * 203.39217 * 8 7 5 10 10 C 1.54266 * 104.31305 * 37.93170 * 9 8 7 11 11 C 1.53869 * 106.60031 * 336.32486 * 10 9 8 12 12 C 1.50705 * 109.47053 * 240.00317 * 2 1 3 13 13 O 1.20829 * 119.99786 * 239.99790 * 12 2 1 14 14 O 1.34230 * 120.00144 * 60.00248 * 12 2 1 15 15 C 1.45195 * 117.00017 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47040 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47055 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99797 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00089 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99989 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47558 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47093 * 120.00166 * 21 19 17 24 24 H 1.48499 * 109.47081 * 239.99916 * 21 19 17 25 25 H 1.09001 * 109.46730 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47159 * 299.99656 * 1 2 3 27 27 H 1.09005 * 109.46804 * 59.99630 * 1 2 3 28 28 H 0.97003 * 119.99782 * 95.00528 * 4 2 1 29 29 H 1.09007 * 110.43017 * 57.46396 * 7 5 4 30 30 H 1.08996 * 110.89448 * 85.10781 * 8 7 5 31 31 H 1.08993 * 110.76342 * 321.62447 * 8 7 5 32 32 H 1.09002 * 110.48891 * 279.18596 * 9 8 7 33 33 H 1.08998 * 110.48494 * 156.67683 * 9 8 7 34 34 H 1.09001 * 110.03084 * 95.60669 * 10 9 8 35 35 H 1.08996 * 110.03108 * 216.98559 * 10 9 8 36 36 H 1.08999 * 110.04012 * 119.28327 * 11 10 9 37 37 H 1.09006 * 110.02998 * 240.67078 * 11 10 9 38 38 H 1.08997 * 109.47361 * 300.00147 * 15 14 12 39 39 H 1.09002 * 109.46750 * 60.00241 * 15 14 12 40 40 H 1.08997 * 109.47537 * 300.00496 * 16 15 14 41 41 H 1.09002 * 109.46780 * 60.00715 * 16 15 14 42 42 H 0.97001 * 120.00361 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8582 1.1583 2.4117 7 6 2.6488 -0.7290 3.5877 8 6 1.6395 -1.8210 4.0335 9 6 1.9687 -1.9910 5.5374 10 6 2.2778 -0.5602 6.0244 11 6 2.7101 0.2422 4.7847 12 6 2.0323 -0.7104 -1.2305 13 8 2.7270 -1.6928 -1.1197 14 8 1.7081 -0.2517 -2.4497 15 6 2.2277 -0.9855 -3.5897 16 6 1.7556 -0.3190 -4.8834 17 6 2.2954 -1.0802 -6.0667 18 1 2.9131 -1.9525 -5.9115 19 6 2.0008 -0.6632 -7.3474 20 7 1.2491 0.3993 -7.5365 21 14 2.6694 -1.6072 -8.8141 22 1 3.4808 -2.7553 -8.3359 23 1 1.5393 -2.1089 -9.6367 24 1 3.5189 -0.7082 -9.6359 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 3.6295 -1.1667 3.4010 30 1 1.8103 -2.7520 3.4930 31 1 0.6140 -1.4773 3.8989 32 1 2.8390 -2.6344 5.6671 33 1 1.1109 -2.3990 6.0720 34 1 1.3857 -0.1149 6.4649 35 1 3.0848 -0.5812 6.7567 36 1 2.0280 1.0770 4.6235 37 1 3.7274 0.6114 4.9151 38 1 3.3172 -0.9845 -3.5566 39 1 1.8642 -2.0126 -3.5570 40 1 0.6661 -0.3203 -4.9163 41 1 2.1189 0.7082 -4.9164 42 1 1.0421 0.6930 -8.4375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919353054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:27 Heat of formation + Delta-G solvation = -154.850815 kcal Electronic energy + Delta-G solvation = -21947.618666 eV Core-core repulsion = 18505.517959 eV Total energy + Delta-G solvation = -3442.100707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74074 -39.83543 -37.53616 -36.41460 -35.11390 -33.40745 -31.54391 -30.23673 -29.13923 -28.92260 -25.61176 -24.46262 -22.49123 -21.14683 -20.80720 -20.36595 -19.99568 -18.11823 -17.08883 -16.80748 -16.21660 -16.11499 -15.77577 -15.50570 -15.04807 -14.62771 -14.39744 -13.80997 -13.71644 -13.52351 -13.04558 -12.74282 -12.41931 -12.32475 -12.15788 -11.77170 -11.61700 -11.49471 -11.45382 -11.30774 -11.13453 -11.08966 -10.83188 -10.74133 -10.73128 -10.31276 -9.98990 -9.74414 -9.70058 -9.39971 -9.30332 -8.48530 -6.14100 -4.18820 2.32571 2.39962 2.58841 3.25027 3.28589 3.33291 3.38203 4.12765 4.20536 4.34855 4.39754 4.75510 4.87819 4.97100 5.01489 5.05010 5.11094 5.15855 5.21359 5.22592 5.31037 5.47669 5.57318 5.59392 5.65353 5.74760 5.81811 5.95502 5.98180 6.00683 6.02882 6.05010 6.18788 6.55800 6.82662 7.26824 7.49853 7.56872 7.80313 7.96470 8.05145 8.19011 8.86817 9.45893 10.97354 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.048168 B = 0.002535 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.156508 B =11042.843656 C =11290.117504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.125 0.875 4 N -0.715 5.715 5 C 0.525 3.475 6 O -0.538 6.538 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.113 4.113 12 C 0.455 3.545 13 O -0.516 6.516 14 O -0.349 6.349 15 C 0.075 3.925 16 C 0.024 3.976 17 C -0.527 4.527 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.410 0.590 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 -3.357 25.123 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.142 0.858 4 N -0.370 5.370 5 C 0.312 3.688 6 O -0.414 6.414 7 C -0.135 4.135 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.151 4.151 12 C 0.297 3.703 13 O -0.406 6.406 14 O -0.264 6.264 15 C 0.003 3.997 16 C -0.013 4.013 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.247 0.753 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.019 -2.684 24.978 25.122 hybrid contribution 0.628 -1.059 -1.068 1.630 sum 0.609 -3.743 23.910 24.209 Atomic orbital electron populations 1.22100 0.91777 1.03272 1.04371 1.20364 0.96354 0.97870 0.81090 0.85772 1.45869 1.67710 1.14898 1.08487 1.20578 0.76978 0.87105 0.84132 1.90697 1.49911 1.15966 1.84821 1.22243 1.00898 0.97449 0.92871 1.22566 0.98752 0.97501 0.96438 1.22352 1.01552 0.97058 0.95158 1.22150 1.01311 0.95231 0.97559 1.22082 1.02735 0.98216 0.92019 1.23441 0.77721 0.82931 0.86213 1.90619 1.36088 1.26262 1.87600 1.86523 1.69027 1.56140 1.14674 1.23725 0.98200 0.95296 0.82497 1.19189 0.97932 0.96915 0.87282 1.20998 1.32455 1.12779 0.90268 0.92208 1.24989 0.94971 0.95107 0.99117 1.69981 1.36838 1.23957 1.21945 0.86410 0.78798 0.79856 0.82214 1.19606 1.20805 1.20800 0.91854 0.90734 0.89532 0.75333 0.87923 0.90632 0.90792 0.91315 0.91342 0.91647 0.91694 0.89654 0.91411 0.92163 0.92136 0.95241 0.95251 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.42 37.16 0.35 -1.46 16 2 C 0.15 1.97 3.09 -69.08 -0.21 1.75 16 3 H 0.12 1.68 7.58 -51.93 -0.39 1.29 16 4 N -0.72 -8.17 4.94 -54.93 -0.27 -8.44 16 5 C 0.53 6.04 7.10 -10.98 -0.08 5.96 16 6 O -0.54 -7.90 15.08 5.56 0.08 -7.82 16 7 C -0.11 -0.94 3.26 -89.92 -0.29 -1.24 16 8 C -0.11 -0.78 6.34 -24.55 -0.16 -0.93 16 9 C -0.12 -0.72 6.82 -25.07 -0.17 -0.89 16 10 C -0.12 -0.80 6.80 -25.62 -0.17 -0.98 16 11 C -0.11 -0.93 6.19 -25.62 -0.16 -1.09 16 12 C 0.45 7.54 7.32 36.01 0.26 7.80 16 13 O -0.52 -9.38 15.59 -18.75 -0.29 -9.68 16 14 O -0.35 -6.70 10.12 -39.26 -0.40 -7.09 16 15 C 0.08 1.63 5.40 37.16 0.20 1.83 16 16 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 17 C -0.53 -14.63 9.11 -34.44 -0.31 -14.94 16 18 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 21 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 28 H 0.41 4.26 7.79 -40.82 -0.32 3.94 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.87 6.85 -51.93 -0.36 0.51 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 39 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -31.50 351.79 -7.79 -39.29 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.94 Total: -0.26 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.99 Total: -2.11 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.46 Total: -33.83 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.61 Total: -24.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.50 -7.79 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919353054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.557 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds