Wall clock time and date at job start Tue Mar 31 2020 06:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47005 * 2 1 4 4 C 1.34228 * 117.00042 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00106 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00139 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.47285 * 185.49241 * 6 4 3 8 8 H 1.09002 * 109.99681 * 306.79255 * 7 6 4 9 9 C 1.54320 * 109.87936 * 67.88537 * 7 6 4 10 10 C 1.55155 * 102.94300 * 141.60727 * 9 7 6 11 11 C 1.54909 * 101.58284 * 324.50307 * 10 9 7 12 12 N 1.47020 * 109.88231 * 185.69049 * 7 6 4 13 13 C 1.34783 * 125.64685 * 61.62909 * 12 7 6 14 14 O 1.21280 * 120.00035 * 354.94982 * 13 12 7 15 15 C 1.50695 * 120.00161 * 174.95507 * 13 12 7 16 16 C 1.52994 * 109.47280 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47336 * 179.97438 * 16 15 13 18 18 H 1.08006 * 120.00011 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00383 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00170 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00388 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46811 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46648 * 120.00142 * 21 19 17 24 24 H 1.48492 * 109.47268 * 240.00293 * 21 19 17 25 25 H 1.08996 * 109.47170 * 60.00329 * 1 2 3 26 26 H 1.08998 * 109.47006 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47466 * 300.00498 * 1 2 3 28 28 H 1.08998 * 109.47466 * 239.99502 * 2 1 3 29 29 H 1.09002 * 109.46776 * 119.99598 * 2 1 3 30 30 H 1.09006 * 109.46946 * 65.49673 * 6 4 3 31 31 H 1.08997 * 109.47319 * 305.49857 * 6 4 3 32 32 H 1.08996 * 110.72231 * 259.97681 * 9 7 6 33 33 H 1.09003 * 110.72124 * 23.24692 * 9 7 6 34 34 H 1.08997 * 111.00838 * 206.41788 * 10 9 7 35 35 H 1.09009 * 110.99774 * 82.57264 * 10 9 7 36 36 H 1.09000 * 110.36154 * 278.16809 * 11 10 9 37 37 H 1.08998 * 110.36917 * 155.84564 * 11 10 9 38 38 H 1.09001 * 109.47158 * 300.00060 * 15 13 12 39 39 H 1.09001 * 109.47474 * 59.99341 * 15 13 12 40 40 H 1.08996 * 109.47036 * 299.99867 * 16 15 13 41 41 H 1.09008 * 109.47202 * 59.99853 * 16 15 13 42 42 H 0.96997 * 120.00538 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4425 2.8599 -0.1398 8 1 5.8531 2.1990 0.6236 9 6 5.8156 2.3368 -1.5428 10 6 7.0648 3.1816 -1.9077 11 6 6.7177 4.5457 -1.2609 12 7 6.0259 4.2027 -0.0051 13 6 5.9418 4.9899 1.0857 14 8 5.2683 4.6435 2.0330 15 6 6.6846 6.3003 1.1283 16 6 6.4211 6.9927 2.4669 17 6 7.1644 8.3029 2.5097 18 1 7.7644 8.6112 1.6663 19 6 7.0777 9.1086 3.6251 20 7 6.3467 8.7335 4.6521 21 14 7.9985 10.7331 3.6779 22 1 8.7421 10.9220 2.4066 23 1 7.0304 11.8452 3.8547 24 1 8.9544 10.7236 4.8143 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.6660 3.4364 0.9340 31 1 3.5078 3.5010 -0.8378 32 1 6.0646 1.2763 -1.5054 33 1 5.0066 2.5193 -2.2502 34 1 7.1700 3.2770 -2.9884 35 1 7.9662 2.7574 -1.4651 36 1 6.0581 5.1179 -1.9133 37 1 7.6272 5.1086 -1.0514 38 1 7.7533 6.1160 1.0183 39 1 6.3407 6.9395 0.3151 40 1 5.3525 7.1771 2.5764 41 1 6.7648 6.3536 3.2804 42 1 6.2860 9.3001 5.4370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117656280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:02 Heat of formation + Delta-G solvation = -139.910758 kcal Electronic energy + Delta-G solvation = -22408.842324 eV Core-core repulsion = 18967.389466 eV Total energy + Delta-G solvation = -3441.452857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80191 -39.71048 -37.39022 -36.60745 -33.51635 -32.48746 -31.82973 -31.33087 -30.57105 -26.92383 -25.82303 -23.74483 -22.95231 -21.66308 -21.36510 -20.25822 -18.55310 -17.78259 -17.04842 -16.82465 -16.75107 -15.83904 -15.47036 -14.84638 -14.75035 -14.43901 -14.15885 -13.67633 -13.49486 -13.15939 -13.09904 -12.95044 -12.57291 -12.29385 -12.11190 -12.07612 -11.87743 -11.72835 -11.34789 -11.09239 -10.96592 -10.94484 -10.87917 -10.72253 -10.58141 -10.55282 -9.95846 -9.65029 -9.16905 -9.00882 -8.48236 -8.31666 -5.95926 -4.00294 2.12676 2.44914 3.17582 3.30877 3.32765 3.40166 3.43374 4.41566 4.42357 4.48705 4.63816 4.65909 4.69696 4.75662 4.98013 5.00212 5.15957 5.24249 5.39155 5.39863 5.42208 5.49245 5.49799 5.65553 5.68016 5.71726 5.77444 5.82512 5.94190 6.12679 6.22381 6.23428 6.31831 6.55113 6.89204 7.64779 7.74833 7.81770 7.86146 8.07167 8.38267 8.70195 9.08212 9.63334 11.15051 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.003344 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.195083 B = 8371.335867 C = 9378.445841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.472 3.528 5 O -0.510 6.510 6 C -0.130 4.130 7 C 0.150 3.850 8 H 0.084 0.916 9 C -0.126 4.126 10 C -0.134 4.134 11 C 0.101 3.899 12 N -0.627 5.627 13 C 0.527 3.473 14 O -0.531 6.531 15 C -0.124 4.124 16 C 0.036 3.964 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 -15.850 -16.104 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.315 3.685 5 O -0.398 6.398 6 C -0.168 4.168 7 C 0.046 3.954 8 H 0.102 0.898 9 C -0.163 4.163 10 C -0.172 4.172 11 C -0.022 4.022 12 N -0.364 5.364 13 C 0.318 3.682 14 O -0.406 6.406 15 C -0.164 4.164 16 C -0.001 4.001 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.183 -16.222 -15.312 23.148 hybrid contribution 0.435 0.733 0.083 0.857 sum -5.747 -15.488 -15.229 22.468 Atomic orbital electron populations 1.21809 0.92655 1.02887 1.03664 1.23013 0.95384 0.80345 1.02534 1.86532 1.24746 1.32290 1.84039 1.23655 0.80418 0.92670 0.71798 1.90643 1.60292 1.43246 1.45633 1.21896 0.96548 0.91025 1.07377 1.21226 0.90231 0.85338 0.98610 0.89752 1.22719 0.98107 1.00784 0.94737 1.22800 0.98290 0.95070 1.00998 1.22295 0.97426 0.97123 0.85364 1.48843 1.55517 1.16993 1.15084 1.21401 0.80923 0.85996 0.79871 1.90657 1.40720 1.73837 1.35345 1.21862 0.99225 0.91111 1.04188 1.18920 0.97853 0.94223 0.89131 1.21245 1.29549 1.04065 1.01557 0.92562 1.25025 0.95491 0.98185 0.95702 1.70006 1.39579 1.37594 1.05628 0.86539 0.79657 0.83827 0.77961 1.19754 1.21022 1.21022 0.91489 0.90298 0.91326 0.91312 0.91209 0.85683 0.87774 0.89519 0.90991 0.89903 0.90443 0.91413 0.89935 0.90203 0.90266 0.95785 0.95806 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 37.16 0.38 -0.66 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.36 -4.38 10.22 -39.25 -0.40 -4.78 16 4 C 0.47 6.25 7.68 36.01 0.28 6.53 16 5 O -0.51 -7.53 14.80 -18.75 -0.28 -7.81 16 6 C -0.13 -1.71 5.29 -27.88 -0.15 -1.86 16 7 C 0.15 2.02 2.55 -66.95 -0.17 1.85 16 8 H 0.08 1.31 7.83 -51.93 -0.41 0.90 16 9 C -0.13 -1.26 5.59 -24.90 -0.14 -1.40 16 10 C -0.13 -1.16 7.08 -24.58 -0.17 -1.34 16 11 C 0.10 1.09 6.74 -2.53 -0.02 1.08 16 12 N -0.63 -9.30 3.06 -163.03 -0.50 -9.80 16 13 C 0.53 10.25 7.66 -10.99 -0.08 10.17 16 14 O -0.53 -12.36 14.77 5.56 0.08 -12.28 16 15 C -0.12 -2.53 4.57 -27.89 -0.13 -2.65 16 16 C 0.04 0.97 4.26 -27.89 -0.12 0.86 16 17 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 30 H 0.13 1.98 6.54 -51.93 -0.34 1.64 16 31 H 0.10 1.16 8.00 -51.93 -0.42 0.74 16 32 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 33 H 0.07 0.64 7.76 -51.93 -0.40 0.24 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.87 7.47 -51.93 -0.39 0.48 16 38 H 0.08 1.50 7.96 -51.93 -0.41 1.09 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -34.49 348.39 -7.59 -42.08 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.96 Total: -2.34 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.50 Total: -0.26 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.24 Total: -36.49 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.60 Total: -24.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.49 -7.59 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117656280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.826 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds