Wall clock time and date at job start Tue Mar 31 2020 06:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45197 * 109.47045 * 2 1 4 4 C 1.34229 * 117.00065 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00175 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99875 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.47283 * 184.27487 * 6 4 3 8 8 H 1.09005 * 109.99544 * 52.90028 * 7 6 4 9 9 C 1.54339 * 109.99142 * 291.86938 * 7 6 4 10 10 C 1.55161 * 103.01580 * 218.66230 * 9 7 6 11 11 C 1.54907 * 101.58217 * 35.30573 * 10 9 7 12 12 N 1.47020 * 109.88682 * 173.99883 * 7 6 4 13 13 C 1.34774 * 125.64481 * 298.39765 * 12 7 6 14 14 O 1.21285 * 120.00365 * 354.59666 * 13 12 7 15 15 C 1.50706 * 119.99834 * 174.59687 * 13 12 7 16 16 C 1.53007 * 109.47025 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.46744 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00271 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99512 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00272 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99740 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47194 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46733 * 120.00161 * 21 19 17 24 24 H 1.48500 * 109.47106 * 239.99978 * 21 19 17 25 25 H 1.08996 * 109.47384 * 59.99996 * 1 2 3 26 26 H 1.09007 * 109.47123 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46999 * 299.99211 * 1 2 3 28 28 H 1.09006 * 109.47140 * 240.00059 * 2 1 3 29 29 H 1.09004 * 109.47659 * 120.00053 * 2 1 3 30 30 H 1.09004 * 109.47328 * 64.28004 * 6 4 3 31 31 H 1.09000 * 109.47601 * 304.27380 * 6 4 3 32 32 H 1.09001 * 110.85073 * 100.19501 * 9 7 6 33 33 H 1.09003 * 110.66461 * 337.04140 * 9 7 6 34 34 H 1.08996 * 111.00200 * 277.22397 * 10 9 7 35 35 H 1.09003 * 110.99825 * 153.38159 * 10 9 7 36 36 H 1.09002 * 110.36400 * 204.15109 * 11 10 9 37 37 H 1.08996 * 110.36735 * 81.82815 * 11 10 9 38 38 H 1.08993 * 109.47187 * 299.99620 * 15 13 12 39 39 H 1.08997 * 109.47162 * 60.00211 * 15 13 12 40 40 H 1.09007 * 109.46727 * 300.00093 * 16 15 13 41 41 H 1.08997 * 109.46997 * 60.00086 * 16 15 13 42 42 H 0.97000 * 120.00075 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9374 -0.0012 7 6 5.4448 2.8590 -0.1092 8 1 5.7267 2.2461 -0.9654 9 6 6.0350 2.2546 1.1825 10 6 7.3266 3.0866 1.3992 11 6 6.8847 4.4837 0.8967 12 7 6.0060 4.2100 -0.2549 13 6 5.7543 5.0598 -1.2703 14 8 5.0864 4.6952 -2.2148 15 6 6.3027 6.4630 -1.2321 16 6 5.8736 7.2128 -2.4949 17 6 6.4226 8.6157 -2.4569 18 1 7.0176 8.9402 -1.6160 19 6 6.1651 9.4850 -3.4957 20 7 5.4409 9.0897 -4.5198 21 14 6.8450 11.2243 -3.4483 22 1 7.6217 11.4183 -2.1977 23 1 7.7316 11.4412 -4.6198 24 1 5.7226 12.1958 -3.4904 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.6477 3.4439 0.9247 31 1 3.5244 3.4942 -0.8504 32 1 6.2741 1.2003 1.0436 33 1 5.3470 2.3859 2.0178 34 1 8.1478 2.6968 0.7978 35 1 7.5982 3.1187 2.4543 36 1 7.7513 5.0655 0.5829 37 1 6.3349 5.0108 1.6764 38 1 5.9164 6.9802 -0.3539 39 1 7.3910 6.4265 -1.1829 40 1 6.2595 6.6956 -3.3734 41 1 4.7853 7.2493 -2.5436 42 1 5.2595 9.7014 -5.2505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117656281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:05 Heat of formation + Delta-G solvation = -139.797840 kcal Electronic energy + Delta-G solvation = -22418.919100 eV Core-core repulsion = 18977.471139 eV Total energy + Delta-G solvation = -3441.447961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80777 -39.70359 -37.39629 -36.60133 -33.50860 -32.48120 -31.82396 -31.34215 -30.57116 -26.92802 -25.81711 -23.73843 -22.95153 -21.64791 -21.36479 -20.25690 -18.56115 -17.77992 -17.09542 -16.81106 -16.73673 -15.82229 -15.50321 -14.81795 -14.72754 -14.42522 -14.20645 -13.67914 -13.48506 -13.16021 -13.07757 -12.90165 -12.56791 -12.35640 -12.14621 -12.05706 -11.85958 -11.71403 -11.33125 -11.08950 -10.97428 -10.94357 -10.86595 -10.72348 -10.58374 -10.54129 -9.95467 -9.65484 -9.17537 -9.01353 -8.47796 -8.31721 -5.95960 -4.00292 2.11006 2.44184 3.18469 3.31017 3.32720 3.40151 3.43374 4.41861 4.42652 4.48892 4.63748 4.66273 4.70916 4.75696 4.98325 5.00402 5.13626 5.24688 5.39115 5.39840 5.42398 5.49712 5.50320 5.66019 5.68841 5.72690 5.76809 5.83739 5.95049 6.13750 6.22178 6.23801 6.31047 6.55644 6.89192 7.63717 7.74844 7.82303 7.86138 8.07173 8.38310 8.70649 9.08237 9.63297 11.15006 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.003421 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.202140 B = 8183.906995 C = 9264.621475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.358 6.358 4 C 0.472 3.528 5 O -0.510 6.510 6 C -0.129 4.129 7 C 0.150 3.850 8 H 0.083 0.917 9 C -0.122 4.122 10 C -0.134 4.134 11 C 0.101 3.899 12 N -0.627 5.627 13 C 0.526 3.474 14 O -0.530 6.530 15 C -0.124 4.124 16 C 0.036 3.964 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.292 -16.931 15.270 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.275 6.275 4 C 0.315 3.685 5 O -0.398 6.398 6 C -0.167 4.167 7 C 0.046 3.954 8 H 0.101 0.899 9 C -0.160 4.160 10 C -0.172 4.172 11 C -0.022 4.022 12 N -0.365 5.365 13 C 0.317 3.683 14 O -0.405 6.405 15 C -0.164 4.164 16 C -0.001 4.001 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.551 -17.303 14.489 22.846 hybrid contribution 0.296 0.811 -0.015 0.864 sum -3.255 -16.492 14.474 22.183 Atomic orbital electron populations 1.21812 0.92639 1.02890 1.03698 1.23017 0.95408 0.80301 1.02523 1.86535 1.24697 1.32320 1.83990 1.23601 0.80451 0.92605 0.71833 1.90639 1.60278 1.43237 1.45603 1.21846 0.96858 0.91256 1.06770 1.21191 0.89881 0.84921 0.99393 0.89944 1.22697 0.96875 1.00518 0.95935 1.22813 0.97792 0.94828 1.01796 1.22286 0.94195 0.97304 0.88377 1.48852 1.48281 1.15326 1.23994 1.21407 0.79593 0.87464 0.79800 1.90673 1.39454 1.77700 1.32687 1.21869 1.00997 0.89417 1.04107 1.18922 0.97478 0.93504 0.90225 1.21245 1.32939 0.97035 1.05201 0.92559 1.25027 0.95250 0.98622 0.95504 1.70007 1.38427 1.35611 1.08750 0.86541 0.78768 0.84744 0.77936 1.19751 1.21028 1.21017 0.91296 0.90292 0.91480 0.91197 0.91312 0.87489 0.86275 0.89391 0.91052 0.90501 0.89905 0.90040 0.91413 0.90189 0.90289 0.95809 0.95794 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.40 10.22 -39.26 -0.40 -4.80 16 4 C 0.47 6.20 7.78 36.00 0.28 6.48 16 5 O -0.51 -7.37 14.53 -18.75 -0.27 -7.64 16 6 C -0.13 -1.67 5.30 -27.88 -0.15 -1.82 16 7 C 0.15 2.02 2.49 -66.94 -0.17 1.86 16 8 H 0.08 1.28 7.97 -51.93 -0.41 0.87 16 9 C -0.12 -1.24 5.45 -24.89 -0.14 -1.38 16 10 C -0.13 -1.18 7.09 -24.58 -0.17 -1.36 16 11 C 0.10 1.10 6.65 -2.53 -0.02 1.09 16 12 N -0.63 -9.32 3.06 -163.01 -0.50 -9.82 16 13 C 0.53 10.26 7.56 -10.98 -0.08 10.18 16 14 O -0.53 -12.44 15.17 5.55 0.08 -12.36 16 15 C -0.12 -2.53 4.73 -27.88 -0.13 -2.66 16 16 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 17 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 21 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.11 1.16 8.00 -51.93 -0.42 0.75 16 31 H 0.12 1.85 6.87 -51.93 -0.36 1.49 16 32 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 33 H 0.07 0.65 7.75 -51.93 -0.40 0.24 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.86 7.51 -51.93 -0.39 0.47 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.48 7.77 -51.93 -0.40 1.08 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -34.53 348.56 -7.58 -42.11 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.97 Total: -2.42 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.49 Total: -0.25 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.24 Total: -36.50 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.59 Total: -24.80 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.53 -7.58 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117656281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.687 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds