Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53098 * 109.47924 * 239.97571 * 2 1 3 5 5 C 1.53173 * 109.16229 * 182.39751 * 4 2 1 6 6 H 1.09000 * 109.54055 * 176.94019 * 5 4 2 7 7 C 1.50707 * 109.54311 * 297.11500 * 5 4 2 8 8 O 1.21281 * 120.00230 * 0.02562 * 7 5 4 9 9 N 1.34782 * 119.99806 * 180.02562 * 7 5 4 10 10 C 1.47422 * 125.64501 * 359.69054 * 9 7 5 11 11 C 1.55136 * 104.71642 * 155.81662 * 10 9 7 12 12 C 1.55154 * 101.48591 * 37.29885 * 11 10 9 13 13 O 1.42899 * 110.87768 * 82.76549 * 12 11 10 14 14 C 1.50698 * 110.71919 * 205.96771 * 12 11 10 15 15 H 1.08007 * 119.99926 * 113.52097 * 14 12 11 16 16 C 1.37875 * 120.00277 * 293.51773 * 14 12 11 17 17 N 1.31520 * 119.99490 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00523 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46788 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46797 * 120.00066 * 18 16 14 21 21 H 1.48497 * 109.47308 * 240.00591 * 18 16 14 22 22 C 1.47016 * 125.64543 * 179.97438 * 9 7 5 23 23 C 1.53171 * 109.03669 * 56.98045 * 5 4 2 24 24 C 1.53090 * 109.16805 * 303.01726 * 23 5 4 25 25 O 1.42901 * 109.48873 * 120.02844 * 2 1 3 26 26 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 28 28 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 29 29 H 1.08999 * 109.51953 * 302.30753 * 4 2 1 30 30 H 1.09009 * 109.51672 * 62.43170 * 4 2 1 31 31 H 1.08991 * 110.36994 * 274.74372 * 10 9 7 32 32 H 1.08995 * 110.36633 * 37.07446 * 10 9 7 33 33 H 1.09000 * 111.19536 * 279.18912 * 11 10 9 34 34 H 1.09003 * 110.93691 * 155.28922 * 11 10 9 35 35 H 0.96695 * 114.00130 * 66.38607 * 13 12 11 36 36 H 0.97001 * 119.99257 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.88530 * 300.43876 * 22 9 7 38 38 H 1.08998 * 109.88235 * 61.45477 * 22 9 7 39 39 H 1.09002 * 109.51983 * 62.92805 * 23 5 4 40 40 H 1.09002 * 109.52409 * 183.11428 * 23 5 4 41 41 H 1.09000 * 109.48489 * 177.58764 * 24 23 5 42 42 H 1.08993 * 109.48419 * 297.61659 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2497 5 6 3.5711 -0.7706 -1.2124 6 1 3.9392 -1.3309 -2.0719 7 6 4.1209 0.6321 -1.2520 8 8 3.3646 1.5787 -1.3044 9 7 5.4533 0.8345 -1.2292 10 6 6.4814 -0.2199 -1.1602 11 6 7.7512 0.4271 -1.7732 12 6 7.6425 1.8818 -1.2447 13 8 8.1568 1.9803 0.0849 14 6 8.3589 2.8378 -2.1634 15 1 7.7982 3.5743 -2.7200 16 6 9.7299 2.7722 -2.2935 17 7 10.4125 1.8751 -1.6161 18 14 10.6178 3.9567 -3.4329 19 1 9.6297 4.8604 -4.0749 20 1 11.5891 4.7622 -2.6500 21 1 11.3404 3.1894 -4.4790 22 6 6.1217 2.1434 -1.2632 23 6 4.0178 -1.4597 0.0805 24 6 3.4311 -0.7091 1.2788 25 8 2.0068 -0.6741 1.1663 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6444 -1.7374 -1.2710 30 1 1.7137 -0.1848 -2.1400 31 1 6.6614 -0.5069 -0.1243 32 1 6.1764 -1.0861 -1.7473 33 1 7.7187 0.4037 -2.8625 34 1 8.6537 -0.0575 -1.4008 35 1 9.1088 1.8243 0.1510 36 1 11.3770 1.8287 -1.7079 37 1 5.8481 2.6759 -2.1740 38 1 5.8336 2.7295 -0.3906 39 1 3.6617 -2.4899 0.0860 40 1 5.1061 -1.4492 0.1416 41 1 3.7104 -1.2201 2.2002 42 1 3.8195 0.3091 1.2957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118213822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = -138.906950 kcal Electronic energy + Delta-G solvation = -23971.751675 eV Core-core repulsion = 20530.342346 eV Total energy + Delta-G solvation = -3441.409329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54797 -38.51825 -37.10192 -34.54094 -33.53863 -32.65398 -32.20346 -29.73471 -28.40597 -27.86611 -25.63085 -24.10104 -23.08066 -21.96512 -20.92245 -19.64034 -18.49525 -17.31828 -16.43080 -16.17849 -16.05626 -15.42919 -15.14131 -14.99594 -14.50188 -14.22011 -13.78613 -13.67527 -13.10976 -12.91155 -12.45492 -12.44206 -12.21677 -12.14250 -11.94012 -11.81265 -11.55944 -11.40070 -11.34197 -11.04887 -10.91032 -10.68389 -10.64490 -10.50640 -10.32728 -10.16956 -9.55231 -9.45256 -9.03801 -8.71934 -8.27076 -8.06580 -6.35374 -4.42482 2.97216 3.15109 3.24467 3.28887 3.47283 3.86496 4.22278 4.60800 4.70949 4.81757 4.92502 4.96698 5.09974 5.29414 5.41981 5.44082 5.57431 5.62477 5.64705 5.68814 5.73240 5.82651 5.83880 5.90756 5.93177 6.00962 6.03589 6.18255 6.19467 6.30178 6.40293 6.63133 6.83583 6.90425 7.23369 7.27535 7.35160 7.68152 7.94388 8.05317 8.55429 8.60910 9.26116 9.39467 10.72517 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036449 B = 0.004270 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.016863 B = 6555.492518 C = 6814.764775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.073 3.927 3 H 0.086 0.914 4 C -0.125 4.125 5 C -0.108 4.108 6 H 0.097 0.903 7 C 0.524 3.476 8 O -0.552 6.552 9 N -0.605 5.605 10 C 0.095 3.905 11 C -0.137 4.137 12 C 0.248 3.752 13 O -0.587 6.587 14 C -0.535 4.535 15 H 0.065 0.935 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.122 3.878 23 C -0.154 4.154 24 C 0.062 3.938 25 O -0.385 6.385 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.386 0.614 36 H 0.269 0.731 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.456 -8.568 1.614 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 H 0.104 0.896 4 C -0.163 4.163 5 C -0.129 4.129 6 H 0.115 0.885 7 C 0.313 3.687 8 O -0.432 6.432 9 N -0.337 5.337 10 C -0.028 4.028 11 C -0.176 4.176 12 C 0.208 3.792 13 O -0.397 6.397 14 C -0.573 4.573 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C 0.000 4.000 23 C -0.192 4.192 24 C -0.015 4.015 25 O -0.304 6.304 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.238 0.762 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.494 -8.086 1.882 14.179 hybrid contribution 1.566 0.423 -1.055 1.935 sum -9.928 -7.663 0.827 12.569 Atomic orbital electron populations 1.21725 0.93540 1.02190 1.02277 1.22380 0.94632 0.97210 0.84202 0.89641 1.21975 0.93084 1.01400 0.99830 1.21346 0.97136 0.94315 1.00119 0.88460 1.20163 0.80955 0.90978 0.76653 1.90606 1.56873 1.44190 1.51501 1.48654 1.04643 1.09685 1.70755 1.22614 0.89540 0.90305 1.00316 1.23372 0.94817 0.99254 1.00177 1.19425 0.87143 0.91066 0.81607 1.86094 1.29802 1.94544 1.29254 1.21596 0.92359 1.17819 1.25552 0.91667 1.24988 0.97359 0.95213 0.95453 1.69582 1.07981 1.34306 1.41933 0.86346 0.79513 0.80764 0.80293 1.19572 1.20701 1.20787 1.22088 0.93226 0.83533 1.01163 1.22324 1.02575 1.00182 0.94070 1.22512 0.81247 0.99867 0.97897 1.87852 1.20703 1.78260 1.43592 0.92357 0.92128 0.91191 0.90876 0.90311 0.91651 0.92111 0.91408 0.89626 0.76158 0.92119 0.91076 0.92146 0.90188 0.89464 0.88752 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.57 37.16 0.36 -1.24 16 2 C 0.07 1.03 2.98 -26.68 -0.08 0.96 16 3 H 0.09 1.46 5.80 -51.93 -0.30 1.16 16 4 C -0.12 -1.62 4.56 -26.59 -0.12 -1.74 16 5 C -0.11 -1.49 2.38 -91.59 -0.22 -1.70 16 6 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 7 C 0.52 9.43 5.88 -10.98 -0.06 9.37 16 8 O -0.55 -11.44 14.17 5.56 0.08 -11.36 16 9 N -0.61 -11.50 3.32 -170.39 -0.57 -12.07 16 10 C 0.09 1.62 5.15 -2.41 -0.01 1.61 16 11 C -0.14 -2.84 5.69 -24.46 -0.14 -2.98 16 12 C 0.25 5.83 0.85 -89.94 -0.08 5.75 16 13 O -0.59 -14.46 13.10 -35.23 -0.46 -14.92 16 14 C -0.53 -13.73 8.21 -34.44 -0.28 -14.01 16 15 H 0.07 1.69 7.53 -52.48 -0.40 1.30 16 16 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 17 N -0.90 -22.55 10.70 55.43 0.59 -21.95 16 18 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 22 C 0.12 2.69 6.22 -3.07 -0.02 2.67 16 23 C -0.15 -1.90 5.48 -26.60 -0.15 -2.05 16 24 C 0.06 0.85 6.62 37.20 0.25 1.09 16 25 O -0.38 -5.68 10.41 -35.23 -0.37 -6.05 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.03 8.03 -51.92 -0.42 0.62 16 31 H 0.07 1.08 7.04 -51.93 -0.37 0.72 16 32 H 0.06 0.87 7.39 -51.93 -0.38 0.48 16 33 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 34 H 0.09 1.84 7.77 -51.93 -0.40 1.43 16 35 H 0.39 9.62 6.98 45.56 0.32 9.94 16 36 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 37 H 0.07 1.61 7.63 -51.93 -0.40 1.22 16 38 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.07 4.98 -51.93 -0.26 0.81 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.81 7.38 -51.93 -0.38 0.43 16 LS Contribution 323.06 15.07 4.87 4.87 Total: -1.00 -27.71 323.06 -7.43 -35.14 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.90 Total: 12.01 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.65 Total: -0.56 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.03 Total: -34.02 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.75 Total: -32.34 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.71 -7.43 -35.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118213822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.768 kcal (2) G-P(sol) polarization free energy of solvation -27.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds