Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.48159 * 2 1 4 4 C 1.53092 * 109.48272 * 239.97386 * 2 1 3 5 5 C 1.53176 * 109.16013 * 182.41157 * 4 2 1 6 6 H 1.09004 * 109.54038 * 297.02310 * 5 4 2 7 7 C 1.50701 * 109.54130 * 176.85118 * 5 4 2 8 8 O 1.21281 * 120.00046 * 0.17115 * 7 5 4 9 9 N 1.34773 * 120.00134 * 180.17741 * 7 5 4 10 10 C 1.47425 * 125.64575 * 359.95669 * 9 7 5 11 11 C 1.55122 * 104.94083 * 204.04002 * 10 9 7 12 12 C 1.55158 * 101.48717 * 323.22093 * 11 10 9 13 13 O 1.42903 * 110.71946 * 276.83135 * 12 11 10 14 14 C 1.50694 * 110.72322 * 153.73362 * 12 11 10 15 15 H 1.08000 * 120.00563 * 243.84296 * 14 12 11 16 16 C 1.37885 * 119.99902 * 63.84459 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47019 * 125.65040 * 179.97438 * 9 7 5 23 23 C 1.53169 * 109.11154 * 56.93460 * 5 4 2 24 24 C 1.53097 * 109.15986 * 303.15343 * 23 5 4 25 25 O 1.42895 * 109.49137 * 57.47384 * 24 23 5 26 26 H 1.08995 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47254 * 300.02854 * 1 2 3 28 28 H 1.09002 * 109.46450 * 60.02411 * 1 2 3 29 29 H 1.09004 * 109.51875 * 62.50599 * 4 2 1 30 30 H 1.08997 * 109.56829 * 302.34807 * 4 2 1 31 31 H 1.09004 * 110.37024 * 322.99908 * 10 9 7 32 32 H 1.08999 * 110.37162 * 85.21488 * 10 9 7 33 33 H 1.09004 * 111.16837 * 205.13212 * 11 10 9 34 34 H 1.09000 * 110.93974 * 81.21553 * 11 10 9 35 35 H 0.96694 * 114.00089 * 296.15564 * 13 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.88296 * 59.48486 * 22 9 7 38 38 H 1.09010 * 110.00770 * 298.39160 * 22 9 7 39 39 H 1.09007 * 109.52190 * 62.96999 * 23 5 4 40 40 H 1.09001 * 109.52336 * 183.15604 * 23 5 4 41 41 H 1.08998 * 109.40551 * 297.49157 * 24 23 5 42 42 H 1.09004 * 109.49764 * 177.50933 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7222 -1.2496 5 6 3.5712 -0.7708 -1.2120 6 1 3.9690 0.2436 -1.2422 7 6 4.0802 -1.5474 -2.3990 8 8 3.2974 -2.0140 -3.1993 9 7 5.4052 -1.7235 -2.5712 10 6 6.4628 -1.2126 -1.6802 11 6 7.7276 -1.1190 -2.5734 12 6 7.5626 -2.3712 -3.4748 13 8 8.0499 -3.5393 -2.8114 14 6 8.2668 -2.1760 -4.7927 15 1 7.6984 -2.1549 -5.7108 16 6 9.6369 -2.0243 -4.8265 17 7 10.3290 -2.0495 -3.7085 18 14 10.5098 -1.7831 -6.4603 19 1 10.8916 -3.1056 -7.0176 20 1 9.6019 -1.0895 -7.4089 21 1 11.7299 -0.9623 -6.2530 22 6 6.0353 -2.4567 -3.6788 23 6 4.0195 -1.4588 0.0810 24 6 3.4307 -0.7094 1.2791 25 8 2.0066 -0.6742 1.1665 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5143 0.8897 28 1 -0.3632 0.5135 -0.8902 29 1 1.7150 -0.1841 -2.1398 30 1 1.6444 -1.7373 -1.2721 31 1 6.1937 -0.2280 -1.2977 32 1 6.6322 -1.9056 -0.8561 33 1 8.6370 -1.1848 -1.9761 34 1 7.7178 -0.2056 -3.1681 35 1 8.9986 -3.5192 -2.6256 36 1 11.2929 -1.9432 -3.7323 37 1 5.7623 -1.9986 -4.6294 38 1 5.7171 -3.4992 -3.6649 39 1 3.6645 -2.4894 0.0872 40 1 5.1078 -1.4471 0.1413 41 1 3.8192 0.3088 1.2959 42 1 3.7098 -1.2202 2.2007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118213847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = -143.335137 kcal Electronic energy + Delta-G solvation = -23520.725252 eV Core-core repulsion = 20079.123902 eV Total energy + Delta-G solvation = -3441.601350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29563 -38.79714 -37.25059 -34.46926 -33.59302 -32.85147 -32.22583 -29.73374 -28.41196 -27.98516 -25.73490 -24.18325 -23.01976 -22.02879 -20.55453 -19.73347 -18.73733 -17.32770 -16.69514 -16.33788 -15.94734 -15.39379 -15.14265 -14.96938 -14.66379 -14.33554 -13.92437 -13.63975 -13.28914 -13.02067 -12.67451 -12.45852 -12.15296 -12.07745 -12.00542 -11.74059 -11.44298 -11.38781 -11.26358 -11.21245 -10.95450 -10.71766 -10.66809 -10.51287 -10.44469 -10.15875 -9.79020 -9.45421 -9.19409 -8.70526 -8.26845 -8.04910 -6.33581 -4.40829 3.00586 3.17525 3.24922 3.28218 3.46893 3.66437 4.23360 4.58249 4.62345 4.73857 4.83299 4.94330 5.04290 5.09938 5.29524 5.34561 5.35642 5.50096 5.52946 5.58890 5.69095 5.71132 5.79516 5.84732 5.86667 5.96667 6.03249 6.09275 6.20554 6.26994 6.41431 6.65274 6.85022 6.92396 7.12965 7.24452 7.29259 7.69034 7.96873 8.07745 8.58134 8.62659 9.26836 9.37364 10.74147 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036904 B = 0.003900 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.548745 B = 7177.462701 C = 7506.246284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.057 0.943 4 C -0.128 4.128 5 C -0.104 4.104 6 H 0.093 0.907 7 C 0.526 3.474 8 O -0.554 6.554 9 N -0.606 5.606 10 C 0.095 3.905 11 C -0.136 4.136 12 C 0.248 3.752 13 O -0.586 6.586 14 C -0.536 4.536 15 H 0.064 0.936 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.272 1.272 21 H -0.285 1.285 22 C 0.122 3.878 23 C -0.155 4.155 24 C 0.066 3.934 25 O -0.382 6.382 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.384 0.616 36 H 0.269 0.731 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 5.948 9.543 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.075 0.925 4 C -0.166 4.166 5 C -0.125 4.125 6 H 0.111 0.889 7 C 0.314 3.686 8 O -0.433 6.433 9 N -0.339 5.339 10 C -0.028 4.028 11 C -0.175 4.175 12 C 0.207 3.793 13 O -0.396 6.396 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.197 1.197 21 H -0.210 1.210 22 C 0.000 4.000 23 C -0.192 4.192 24 C -0.011 4.011 25 O -0.301 6.301 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.235 0.765 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.352 5.464 9.280 15.647 hybrid contribution 1.563 0.470 -1.031 1.931 sum -9.789 5.934 8.248 14.109 Atomic orbital electron populations 1.21750 0.92991 1.03065 1.02267 1.22133 0.95152 0.94870 0.85014 0.92477 1.22041 0.93296 1.03022 0.98210 1.21290 0.97189 1.00179 0.93853 0.88869 1.20082 0.80943 0.80850 0.86676 1.90655 1.55053 1.51295 1.46258 1.48624 1.04758 1.53398 1.27077 1.22602 0.89019 0.97297 0.93859 1.23358 0.94871 1.01196 0.98045 1.19446 0.87210 0.82197 0.90425 1.86117 1.30082 1.42534 1.80817 1.21540 0.92442 1.50512 0.92885 0.91754 1.24987 0.97314 0.93550 0.97152 1.69639 1.07704 1.50103 1.26219 0.86404 0.78911 0.78356 0.83262 1.20355 1.19718 1.21025 1.22071 0.93715 0.95650 0.88545 1.22342 1.02498 1.00874 0.93534 1.22544 0.80910 0.99512 0.98112 1.87915 1.21045 1.78089 1.43056 0.91705 0.91954 0.91022 0.90296 0.90166 0.92204 0.91748 0.89423 0.91472 0.76493 0.92143 0.91082 0.92125 0.90524 0.89378 0.93071 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.57 37.16 0.36 -0.96 16 2 C 0.09 0.94 3.26 -26.68 -0.09 0.85 16 3 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.65 4.02 -26.59 -0.11 -1.76 16 5 C -0.10 -1.44 1.95 -91.59 -0.18 -1.62 16 6 H 0.09 1.15 7.85 -51.93 -0.41 0.74 16 7 C 0.53 9.77 7.22 -10.99 -0.08 9.69 16 8 O -0.55 -12.07 16.29 5.56 0.09 -11.98 16 9 N -0.61 -11.77 3.32 -170.38 -0.57 -12.34 16 10 C 0.09 1.64 5.14 -2.41 -0.01 1.63 16 11 C -0.14 -2.84 5.59 -24.47 -0.14 -2.97 16 12 C 0.25 5.87 0.85 -89.94 -0.08 5.79 16 13 O -0.59 -14.51 13.08 -35.23 -0.46 -14.97 16 14 C -0.54 -13.84 8.21 -34.44 -0.28 -14.13 16 15 H 0.06 1.68 7.55 -52.49 -0.40 1.28 16 16 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 17 N -0.90 -22.58 10.67 55.43 0.59 -21.99 16 18 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.12 2.74 6.22 -3.06 -0.02 2.72 16 23 C -0.15 -1.90 5.19 -26.59 -0.14 -2.04 16 24 C 0.07 0.69 6.84 37.21 0.25 0.94 16 25 O -0.38 -4.65 10.41 -35.23 -0.37 -5.01 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.17 8.02 -51.93 -0.42 0.75 16 31 H 0.06 0.86 7.34 -51.93 -0.38 0.48 16 32 H 0.06 1.07 7.14 -51.93 -0.37 0.70 16 33 H 0.09 1.89 7.65 -51.93 -0.40 1.49 16 34 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 35 H 0.38 9.52 7.23 45.56 0.33 9.85 16 36 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 37 H 0.07 1.63 7.64 -51.93 -0.40 1.24 16 38 H 0.06 1.43 8.07 -51.92 -0.42 1.01 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.05 5.13 -51.93 -0.27 0.79 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -28.53 329.08 -7.43 -35.96 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.06 Total: 10.50 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.60 Total: -0.12 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.03 Total: -34.33 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.74 Total: -31.97 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.53 -7.43 -35.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118213847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.375 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds