Wall clock time and date at job start Tue Mar 31 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49154 * 2 1 4 4 C 1.53092 * 109.47894 * 239.96928 * 2 1 3 5 5 C 1.53173 * 109.16112 * 182.40797 * 4 2 1 6 6 H 1.09003 * 109.54397 * 176.93906 * 5 4 2 7 7 C 1.50696 * 109.54689 * 297.11486 * 5 4 2 8 8 O 1.21280 * 119.99961 * 61.56397 * 7 5 4 9 9 N 1.34784 * 120.00203 * 241.56581 * 7 5 4 10 10 C 1.47023 * 125.64625 * 354.60188 * 9 7 5 11 11 C 1.54316 * 107.27032 * 178.89708 * 10 9 7 12 12 C 1.55153 * 102.94508 * 337.81010 * 11 10 9 13 13 O 1.42906 * 111.00560 * 277.42942 * 12 11 10 14 14 C 1.50703 * 111.00980 * 153.61473 * 12 11 10 15 15 H 1.08000 * 119.99803 * 244.58730 * 14 12 11 16 16 C 1.37873 * 119.99861 * 64.57512 * 14 12 11 17 17 N 1.31508 * 120.00124 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99776 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47010 * 60.00524 * 18 16 14 20 20 H 1.48503 * 109.46725 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47203 * 300.00254 * 18 16 14 22 22 C 1.47418 * 125.65049 * 174.55306 * 9 7 5 23 23 C 1.53175 * 109.03817 * 56.98678 * 5 4 2 24 24 C 1.53100 * 109.15795 * 303.01611 * 23 5 4 25 25 O 1.42895 * 109.41639 * 57.61076 * 24 23 5 26 26 H 1.08996 * 109.47179 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47200 * 300.03321 * 1 2 3 28 28 H 1.09003 * 109.47265 * 60.02474 * 1 2 3 29 29 H 1.09000 * 109.52289 * 62.50401 * 4 2 1 30 30 H 1.08995 * 109.57748 * 302.34974 * 4 2 1 31 31 H 1.09000 * 109.87984 * 59.47764 * 10 9 7 32 32 H 1.09000 * 109.88118 * 298.31639 * 10 9 7 33 33 H 1.08996 * 110.72098 * 219.44151 * 11 10 9 34 34 H 1.09006 * 110.87066 * 96.24292 * 11 10 9 35 35 H 0.96701 * 113.99769 * 298.54160 * 13 12 11 36 36 H 0.97000 * 120.00201 * 179.97438 * 17 16 14 37 37 H 1.09006 * 110.36666 * 85.33243 * 22 9 7 38 38 H 1.09005 * 110.36524 * 323.01210 * 22 9 7 39 39 H 1.08999 * 109.52434 * 62.91600 * 23 5 4 40 40 H 1.08999 * 109.52312 * 183.11467 * 23 5 4 41 41 H 1.08999 * 109.47733 * 297.62368 * 24 23 5 42 42 H 1.09001 * 109.47457 * 177.59158 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5710 -0.7709 -1.2121 6 1 3.9392 -1.3314 -2.0715 7 6 4.1211 0.6315 -1.2518 8 8 3.8555 1.4124 -0.3626 9 7 4.9082 1.0180 -2.2753 10 6 5.3991 0.1485 -3.3545 11 6 6.2351 1.0285 -4.3075 12 6 5.7009 2.4566 -4.0201 13 8 4.5002 2.7112 -4.7519 14 6 6.7476 3.4967 -4.3265 15 1 7.1525 4.1057 -3.5318 16 6 7.1883 3.6706 -5.6212 17 7 6.6950 2.9292 -6.5890 18 14 8.4862 4.9594 -6.0008 19 1 9.7237 4.6552 -5.2385 20 1 8.7848 4.9476 -7.4555 21 1 7.9813 6.3003 -5.6105 22 6 5.4188 2.3828 -2.4988 23 6 4.0176 -1.4602 0.0808 24 6 3.4307 -0.7093 1.2790 25 8 2.0066 -0.6742 1.1664 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5144 0.8897 28 1 -0.3634 0.5135 -0.8902 29 1 1.7148 -0.1844 -2.1399 30 1 1.6443 -1.7374 -1.2721 31 1 4.5566 -0.2849 -3.8934 32 1 6.0223 -0.6430 -2.9383 33 1 6.0550 0.7511 -5.3460 34 1 7.2966 0.9587 -4.0696 35 1 4.6084 2.6699 -5.7120 36 1 7.0048 3.0519 -7.4999 37 1 6.3378 2.5412 -1.9344 38 1 4.6672 3.1200 -2.2161 39 1 3.6612 -2.4902 0.0864 40 1 5.1058 -1.4498 0.1420 41 1 3.8193 0.3089 1.2957 42 1 3.7100 -1.2204 2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118213849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:39 Heat of formation + Delta-G solvation = -138.953545 kcal Electronic energy + Delta-G solvation = -23852.451802 eV Core-core repulsion = 20411.040452 eV Total energy + Delta-G solvation = -3441.411350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50397 -38.53838 -36.98057 -34.36764 -33.50078 -32.65924 -32.23768 -29.87860 -28.47369 -27.75671 -25.59116 -24.17730 -22.77542 -21.97990 -20.93947 -19.68721 -18.42348 -17.25060 -16.64571 -16.20153 -15.85431 -15.32653 -15.00514 -14.87936 -14.49305 -14.33972 -14.13232 -13.33091 -13.00251 -12.75906 -12.67045 -12.34896 -12.23658 -12.08274 -11.87226 -11.81628 -11.71906 -11.39400 -11.37781 -10.94142 -10.90839 -10.76472 -10.68477 -10.53662 -10.33903 -10.08487 -9.59286 -9.43202 -8.78812 -8.68984 -8.27573 -8.03461 -6.33626 -4.41289 2.94885 3.18688 3.23773 3.26742 3.48836 3.95377 4.22969 4.66921 4.74941 4.80864 4.94026 5.01093 5.16721 5.39511 5.44510 5.48198 5.60460 5.65182 5.66357 5.69239 5.76031 5.77547 5.85236 5.92349 5.97083 6.03395 6.14303 6.21369 6.22246 6.33935 6.38668 6.59636 6.82339 6.90334 7.22635 7.26486 7.43464 7.68597 7.96227 8.08281 8.56516 8.61595 9.26559 9.36789 10.74302 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035281 B = 0.004112 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.427368 B = 6807.097931 C = 6886.991007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 H 0.087 0.913 4 C -0.132 4.132 5 C -0.109 4.109 6 H 0.090 0.910 7 C 0.527 3.473 8 O -0.550 6.550 9 N -0.604 5.604 10 C 0.098 3.902 11 C -0.139 4.139 12 C 0.249 3.751 13 O -0.583 6.583 14 C -0.537 4.537 15 H 0.064 0.936 16 C 0.074 3.926 17 N -0.897 5.897 18 Si 0.903 3.097 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.119 3.881 23 C -0.138 4.138 24 C 0.051 3.949 25 O -0.383 6.383 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.382 0.618 36 H 0.269 0.731 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 -9.630 7.194 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 H 0.104 0.896 4 C -0.170 4.170 5 C -0.130 4.130 6 H 0.108 0.892 7 C 0.315 3.685 8 O -0.430 6.430 9 N -0.335 5.335 10 C -0.025 4.025 11 C -0.177 4.177 12 C 0.209 3.791 13 O -0.392 6.392 14 C -0.575 4.575 15 H 0.082 0.918 16 C -0.129 4.129 17 N -0.536 5.536 18 Si 0.731 3.269 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.002 4.002 23 C -0.176 4.176 24 C -0.026 4.026 25 O -0.302 6.302 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.883 -9.293 8.245 13.746 hybrid contribution 1.329 0.495 -1.318 1.936 sum -4.554 -8.798 6.926 12.088 Atomic orbital electron populations 1.21759 0.93689 1.02259 1.02292 1.22311 0.94214 0.97412 0.84294 0.89571 1.22056 0.93051 1.02198 0.99714 1.21335 0.97195 0.94247 1.00225 0.89183 1.20142 0.78078 0.89329 0.80912 1.90554 1.60167 1.55435 1.36858 1.48685 1.48221 1.12209 1.24434 1.22191 0.97716 0.93698 0.88860 1.23205 0.98498 0.97453 0.98571 1.19594 0.83225 0.90757 0.85553 1.86127 1.35152 1.94291 1.23641 1.21417 1.21934 1.19981 0.94157 0.91754 1.24970 0.96250 0.95676 0.95957 1.69636 1.43617 1.39396 1.00954 0.86468 0.81448 0.81805 0.77224 1.20032 1.21089 1.19965 1.22384 0.98215 0.81967 0.97653 1.22034 1.01244 0.99836 0.94467 1.22764 0.81308 1.01809 0.96690 1.87806 1.21037 1.78049 1.43303 0.92326 0.92022 0.91282 0.90630 0.90427 0.92355 0.92832 0.89669 0.91291 0.76716 0.92092 0.91109 0.91187 0.90491 0.90868 0.90127 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.56 37.16 0.36 -1.32 16 2 C 0.08 1.09 2.98 -26.68 -0.08 1.01 16 3 H 0.09 1.49 5.76 -51.93 -0.30 1.19 16 4 C -0.13 -1.76 4.91 -26.59 -0.13 -1.89 16 5 C -0.11 -1.53 2.94 -91.59 -0.27 -1.80 16 6 H 0.09 1.15 6.57 -51.93 -0.34 0.81 16 7 C 0.53 9.50 6.58 -10.98 -0.07 9.43 16 8 O -0.55 -11.18 11.95 5.56 0.07 -11.12 16 9 N -0.60 -11.59 3.33 -170.53 -0.57 -12.15 16 10 C 0.10 1.71 5.87 -3.07 -0.02 1.69 16 11 C -0.14 -2.87 5.51 -24.90 -0.14 -3.01 16 12 C 0.25 5.86 0.87 -89.62 -0.08 5.78 16 13 O -0.58 -14.54 13.15 -35.23 -0.46 -15.00 16 14 C -0.54 -13.72 8.25 -34.44 -0.28 -14.00 16 15 H 0.06 1.64 7.78 -52.49 -0.41 1.23 16 16 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 17 N -0.90 -22.60 10.78 55.43 0.60 -22.00 16 18 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.12 2.61 6.06 -2.53 -0.02 2.60 16 23 C -0.14 -1.72 5.63 -26.59 -0.15 -1.87 16 24 C 0.05 0.70 6.55 37.21 0.24 0.95 16 25 O -0.38 -5.78 10.41 -35.23 -0.37 -6.15 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.95 7.87 -51.93 -0.41 0.55 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.84 7.68 -51.93 -0.40 1.44 16 34 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 35 H 0.38 9.53 7.32 45.56 0.33 9.86 16 36 H 0.27 6.53 8.31 -40.82 -0.34 6.20 16 37 H 0.07 1.51 8.03 -51.93 -0.42 1.10 16 38 H 0.07 1.63 8.09 -51.93 -0.42 1.21 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.31 5.64 -51.93 -0.29 1.02 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -27.56 325.86 -7.58 -35.14 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.01 Total: 12.19 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.73 Total: -0.67 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.03 Total: -34.15 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.76 Total: -32.27 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.56 -7.58 -35.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118213849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.809 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds