Wall clock time and date at job start Tue Mar 31 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49154 * 2 1 4 4 C 1.53092 * 109.47894 * 239.96928 * 2 1 3 5 5 C 1.53173 * 109.16112 * 182.40797 * 4 2 1 6 6 H 1.09003 * 109.54397 * 176.93906 * 5 4 2 7 7 C 1.50696 * 109.54689 * 297.11486 * 5 4 2 8 8 O 1.21280 * 119.99961 * 61.56397 * 7 5 4 9 9 N 1.34784 * 120.00203 * 241.56581 * 7 5 4 10 10 C 1.47023 * 125.64625 * 354.60188 * 9 7 5 11 11 C 1.54316 * 107.27032 * 178.89708 * 10 9 7 12 12 C 1.55153 * 102.94508 * 337.81010 * 11 10 9 13 13 O 1.42906 * 111.00560 * 277.42942 * 12 11 10 14 14 C 1.50703 * 111.00980 * 153.61473 * 12 11 10 15 15 H 1.08000 * 119.99803 * 244.58730 * 14 12 11 16 16 C 1.37873 * 119.99861 * 64.57512 * 14 12 11 17 17 N 1.31508 * 120.00124 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99776 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47010 * 60.00524 * 18 16 14 20 20 H 1.48503 * 109.46725 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47203 * 300.00254 * 18 16 14 22 22 C 1.47418 * 125.65049 * 174.55306 * 9 7 5 23 23 C 1.53175 * 109.03817 * 56.98678 * 5 4 2 24 24 C 1.53100 * 109.15795 * 303.01611 * 23 5 4 25 25 O 1.42895 * 109.41639 * 57.61076 * 24 23 5 26 26 H 1.08996 * 109.47179 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47200 * 300.03321 * 1 2 3 28 28 H 1.09003 * 109.47265 * 60.02474 * 1 2 3 29 29 H 1.09000 * 109.52289 * 62.50401 * 4 2 1 30 30 H 1.08995 * 109.57748 * 302.34974 * 4 2 1 31 31 H 1.09000 * 109.87984 * 59.47764 * 10 9 7 32 32 H 1.09000 * 109.88118 * 298.31639 * 10 9 7 33 33 H 1.08996 * 110.72098 * 219.44151 * 11 10 9 34 34 H 1.09006 * 110.87066 * 96.24292 * 11 10 9 35 35 H 0.96701 * 113.99769 * 298.54160 * 13 12 11 36 36 H 0.97000 * 120.00201 * 179.97438 * 17 16 14 37 37 H 1.09006 * 110.36666 * 85.33243 * 22 9 7 38 38 H 1.09005 * 110.36524 * 323.01210 * 22 9 7 39 39 H 1.08999 * 109.52434 * 62.91600 * 23 5 4 40 40 H 1.08999 * 109.52312 * 183.11467 * 23 5 4 41 41 H 1.08999 * 109.47733 * 297.62368 * 24 23 5 42 42 H 1.09001 * 109.47457 * 177.59158 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5710 -0.7709 -1.2121 6 1 3.9392 -1.3314 -2.0715 7 6 4.1211 0.6315 -1.2518 8 8 3.8555 1.4124 -0.3626 9 7 4.9082 1.0180 -2.2753 10 6 5.3991 0.1485 -3.3545 11 6 6.2351 1.0285 -4.3075 12 6 5.7009 2.4566 -4.0201 13 8 4.5002 2.7112 -4.7519 14 6 6.7476 3.4967 -4.3265 15 1 7.1525 4.1057 -3.5318 16 6 7.1883 3.6706 -5.6212 17 7 6.6950 2.9292 -6.5890 18 14 8.4862 4.9594 -6.0008 19 1 9.7237 4.6552 -5.2385 20 1 8.7848 4.9476 -7.4555 21 1 7.9813 6.3003 -5.6105 22 6 5.4188 2.3828 -2.4988 23 6 4.0176 -1.4602 0.0808 24 6 3.4307 -0.7093 1.2790 25 8 2.0066 -0.6742 1.1664 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5144 0.8897 28 1 -0.3634 0.5135 -0.8902 29 1 1.7148 -0.1844 -2.1399 30 1 1.6443 -1.7374 -1.2721 31 1 4.5566 -0.2849 -3.8934 32 1 6.0223 -0.6430 -2.9383 33 1 6.0550 0.7511 -5.3460 34 1 7.2966 0.9587 -4.0696 35 1 4.6084 2.6699 -5.7120 36 1 7.0048 3.0519 -7.4999 37 1 6.3378 2.5412 -1.9344 38 1 4.6672 3.1200 -2.2161 39 1 3.6612 -2.4902 0.0864 40 1 5.1058 -1.4498 0.1420 41 1 3.8193 0.3089 1.2957 42 1 3.7100 -1.2204 2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118213849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:39 Heat of formation + Delta-G solvation = -157.783978 kcal Electronic energy + Delta-G solvation = -23853.268351 eV Core-core repulsion = 20411.040452 eV Total energy + Delta-G solvation = -3442.227898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80228 -39.98493 -38.49549 -36.09485 -34.67285 -34.19454 -33.67824 -31.52487 -30.10263 -28.83796 -27.27407 -25.47144 -24.14004 -23.19759 -22.19744 -21.42623 -19.85860 -19.09923 -18.05226 -17.34578 -17.04718 -16.90938 -16.72167 -16.29972 -15.94983 -15.59176 -15.56581 -14.94124 -14.46981 -14.11717 -13.89594 -13.71732 -13.51879 -13.31622 -13.24036 -13.18606 -13.04280 -12.99649 -12.83375 -12.63837 -12.50747 -12.28007 -12.00901 -11.85882 -11.78802 -11.54885 -11.30735 -10.73419 -10.62793 -10.17155 -10.00490 -9.55933 -8.25600 -6.39898 1.42577 1.44780 1.51247 1.56583 2.04174 2.39544 2.90507 2.99602 3.44423 3.70157 3.72537 3.82243 3.94372 3.99943 4.12281 4.32576 4.33652 4.39128 4.44552 4.57454 4.60398 4.66807 4.67601 4.70962 4.80245 4.82885 4.88239 4.94120 5.03960 5.11075 5.14856 5.20966 5.29025 5.32669 5.42636 5.51684 5.75850 6.07269 6.33873 6.60558 6.65279 7.14960 7.30833 7.40925 8.80584 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035281 B = 0.004112 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.427368 B = 6807.097931 C = 6886.991007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.048 0.952 4 C -0.129 4.129 5 C -0.103 4.103 6 H 0.112 0.888 7 C 0.520 3.480 8 O -0.579 6.579 9 N -0.610 5.610 10 C 0.105 3.895 11 C -0.129 4.129 12 C 0.236 3.764 13 O -0.593 6.593 14 C -0.565 4.565 15 H 0.053 0.947 16 C 0.040 3.960 17 N -0.907 5.907 18 Si 0.958 3.042 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.280 1.280 22 C 0.126 3.874 23 C -0.132 4.132 24 C 0.046 3.954 25 O -0.391 6.391 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.379 0.621 36 H 0.272 0.728 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 -11.959 7.089 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.013 3.987 3 H 0.066 0.934 4 C -0.167 4.167 5 C -0.125 4.125 6 H 0.131 0.869 7 C 0.310 3.690 8 O -0.460 6.460 9 N -0.342 5.342 10 C -0.017 4.017 11 C -0.168 4.168 12 C 0.196 3.804 13 O -0.402 6.402 14 C -0.603 4.603 15 H 0.072 0.928 16 C -0.162 4.162 17 N -0.546 5.546 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.205 1.205 22 C 0.003 3.997 23 C -0.170 4.170 24 C -0.031 4.031 25 O -0.310 6.310 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.229 0.771 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.906 -11.644 8.144 15.388 hybrid contribution 1.312 1.289 -1.239 2.217 sum -4.595 -10.355 6.904 13.267 Atomic orbital electron populations 1.21749 0.91748 1.03428 1.02655 1.22317 0.95818 0.95618 0.84980 0.93385 1.22078 0.92490 1.03516 0.98636 1.21437 0.97516 0.91367 1.02143 0.86943 1.21032 0.77178 0.90905 0.79843 1.90566 1.60745 1.56817 1.37866 1.48777 1.48890 1.11091 1.25419 1.22224 0.98284 0.93267 0.87925 1.22980 0.98626 0.96228 0.98918 1.19753 0.82475 0.92090 0.86128 1.86115 1.36074 1.94583 1.23471 1.21665 1.23078 1.21096 0.94467 0.92848 1.25562 0.97747 0.97169 0.95732 1.69695 1.43957 1.39843 1.01069 0.85617 0.79439 0.79341 0.77245 1.19568 1.20330 1.20516 1.22099 0.97396 0.83486 0.96748 1.22059 1.01767 1.00665 0.92503 1.22836 0.80847 1.00607 0.98774 1.87797 1.21695 1.77821 1.43735 0.90646 0.92248 0.90456 0.91129 0.87524 0.90692 0.89302 0.90695 0.91856 0.77095 0.91864 0.91332 0.93836 0.87602 0.90021 0.93381 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.56 71.98 0.69 -2.36 16 2 C 0.07 1.97 2.98 30.63 0.09 2.06 16 3 H 0.05 1.72 5.76 -2.39 -0.01 1.70 16 4 C -0.13 -3.12 4.91 30.68 0.15 -2.97 16 5 C -0.10 -2.63 2.94 -11.42 -0.03 -2.67 16 6 H 0.11 2.38 6.57 -2.39 -0.02 2.36 16 7 C 0.52 18.39 6.58 87.65 0.58 18.97 16 8 O -0.58 -24.13 11.95 -3.03 -0.04 -24.16 16 9 N -0.61 -22.99 3.33 -811.81 -2.70 -25.69 16 10 C 0.10 3.42 5.87 86.73 0.51 3.93 16 11 C -0.13 -5.26 5.51 31.78 0.18 -5.08 16 12 C 0.24 11.25 0.87 -10.15 -0.01 11.24 16 13 O -0.59 -30.14 13.15 -148.98 -1.96 -32.10 16 14 C -0.56 -29.43 8.25 25.60 0.21 -29.21 16 15 H 0.05 2.81 7.78 -2.91 -0.02 2.79 16 16 C 0.04 1.99 5.30 84.65 0.45 2.44 16 17 N -0.91 -45.57 10.78 21.44 0.23 -45.34 16 18 Si 0.96 40.67 29.54 68.60 2.03 42.69 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 22 C 0.13 5.64 6.06 86.86 0.53 6.17 16 23 C -0.13 -2.87 5.63 30.69 0.17 -2.70 16 24 C 0.05 1.20 6.55 72.02 0.47 1.67 16 25 O -0.39 -11.24 10.41 -148.98 -1.55 -12.79 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.22 7.87 -2.39 -0.02 2.20 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.07 3.19 7.68 -2.39 -0.02 3.18 16 34 H 0.06 2.61 8.03 -2.38 -0.02 2.59 16 35 H 0.38 19.23 7.32 -74.06 -0.54 18.69 16 36 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 37 H 0.07 3.04 8.03 -2.38 -0.02 3.02 16 38 H 0.04 2.13 8.09 -2.38 -0.02 2.11 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.05 1.59 5.64 -2.39 -0.01 1.57 16 42 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -60.58 325.86 0.47 -60.11 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.47 Total: 35.79 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 3.98 Total: 1.48 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -2.47 Total: -71.03 kcal Atomic # 8 Polarization: -65.50 SS G_CDS: -3.55 Total: -69.05 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -60.58 0.47 -60.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118213849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.672 kcal (2) G-P(sol) polarization free energy of solvation -60.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds