Wall clock time and date at job start Tue Mar 31 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.48265 * 2 1 4 4 C 1.53097 * 109.48018 * 239.97999 * 2 1 3 5 5 C 1.53178 * 109.16657 * 182.39927 * 4 2 1 6 6 H 1.09005 * 109.53903 * 297.02911 * 5 4 2 7 7 C 1.50697 * 109.54630 * 176.84823 * 5 4 2 8 8 O 1.21275 * 119.99563 * 325.12355 * 7 5 4 9 9 N 1.34769 * 119.99951 * 145.40339 * 7 5 4 10 10 C 1.47021 * 125.65107 * 4.81020 * 9 7 5 11 11 C 1.54331 * 107.27431 * 181.02576 * 10 9 7 12 12 C 1.55159 * 102.93941 * 22.19647 * 11 10 9 13 13 O 1.42899 * 111.00448 * 82.61015 * 12 11 10 14 14 C 1.50695 * 111.00202 * 206.42257 * 12 11 10 15 15 H 1.08010 * 119.99751 * 118.54650 * 14 12 11 16 16 C 1.37868 * 120.00374 * 298.54867 * 14 12 11 17 17 N 1.31517 * 119.99873 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00354 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47117 * 89.99601 * 18 16 14 20 20 H 1.48501 * 109.46884 * 209.99608 * 18 16 14 21 21 H 1.48498 * 109.46724 * 329.99764 * 18 16 14 22 22 C 1.47426 * 125.64929 * 184.51100 * 9 7 5 23 23 C 1.53177 * 109.03743 * 56.97469 * 5 4 2 24 24 C 1.53088 * 109.16811 * 303.02560 * 23 5 4 25 25 O 1.42908 * 109.41636 * 57.60618 * 24 23 5 26 26 H 1.09006 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46997 * 300.01814 * 1 2 3 28 28 H 1.08999 * 109.47262 * 60.01940 * 1 2 3 29 29 H 1.08999 * 109.52261 * 62.48985 * 4 2 1 30 30 H 1.09007 * 109.52029 * 302.30290 * 4 2 1 31 31 H 1.08999 * 109.88805 * 300.44934 * 10 9 7 32 32 H 1.09007 * 109.88267 * 61.61314 * 10 9 7 33 33 H 1.08991 * 110.71871 * 140.55906 * 11 10 9 34 34 H 1.08997 * 110.72048 * 263.65471 * 11 10 9 35 35 H 0.96697 * 114.00220 * 61.44962 * 13 12 11 36 36 H 0.97006 * 120.00283 * 179.97438 * 17 16 14 37 37 H 1.09003 * 110.36682 * 274.74397 * 22 9 7 38 38 H 1.09006 * 110.36628 * 37.06412 * 22 9 7 39 39 H 1.08999 * 109.51936 * 62.92871 * 23 5 4 40 40 H 1.08997 * 109.52274 * 183.11378 * 23 5 4 41 41 H 1.08997 * 109.48061 * 297.62768 * 24 23 5 42 42 H 1.08998 * 109.49546 * 177.59511 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7706 -1.2125 6 1 3.9688 0.2439 -1.2426 7 6 4.0799 -1.5471 -2.3996 8 8 3.4504 -2.4950 -2.8190 9 7 5.2373 -1.1915 -2.9915 10 6 6.1495 -0.1369 -2.5254 11 6 7.3224 -0.0702 -3.5262 12 6 6.7211 -0.7033 -4.8088 13 8 5.9658 0.2579 -5.5488 14 6 7.7993 -1.3147 -5.6659 15 1 7.7864 -2.3741 -5.8759 16 6 8.8022 -0.5218 -6.1819 17 7 8.8177 0.7682 -5.9266 18 14 10.1384 -1.2796 -7.2450 19 1 9.7179 -1.2441 -8.6687 20 1 11.3974 -0.5093 -7.0813 21 1 10.3620 -2.6877 -6.8299 22 6 5.8015 -1.7999 -4.2101 23 6 4.0179 -1.4597 0.0804 24 6 3.4310 -0.7092 1.2788 25 8 2.0068 -0.6743 1.1663 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8899 28 1 -0.3634 0.5135 -0.8901 29 1 1.7146 -0.1841 -2.1399 30 1 1.6444 -1.7374 -1.2711 31 1 5.6282 0.8200 -2.5008 32 1 6.5238 -0.3831 -1.5316 33 1 7.6161 0.9635 -3.7077 34 1 8.1702 -0.6530 -3.1662 35 1 6.4853 1.0124 -5.8586 36 1 9.5235 1.3261 -6.2894 37 1 6.3809 -2.6879 -3.9575 38 1 5.0060 -2.0518 -4.9115 39 1 3.6617 -2.4899 0.0859 40 1 5.1061 -1.4493 0.1415 41 1 3.8193 0.3091 1.2955 42 1 3.7104 -1.2200 2.2002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118213850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:42 Heat of formation + Delta-G solvation = -145.381652 kcal Electronic energy + Delta-G solvation = -23457.042790 eV Core-core repulsion = 20015.352697 eV Total energy + Delta-G solvation = -3441.690093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23605 -38.81389 -37.21513 -34.33715 -33.58070 -32.87489 -32.26541 -29.80477 -28.45671 -27.92634 -25.70247 -24.29572 -22.87665 -22.03961 -20.60102 -19.69306 -18.63134 -17.24499 -16.78098 -16.43195 -15.98090 -15.26231 -15.01244 -14.98917 -14.51525 -14.38574 -14.08652 -13.82402 -13.05164 -13.02695 -12.68915 -12.47283 -12.32750 -12.03342 -11.99270 -11.80973 -11.41570 -11.37183 -11.28639 -11.19710 -10.93203 -10.78189 -10.64714 -10.51755 -10.46803 -10.06869 -9.81406 -9.45660 -9.15161 -8.71549 -8.27183 -8.02385 -6.32491 -4.40560 3.00675 3.17716 3.25148 3.28225 3.48515 3.66047 4.23664 4.64063 4.65195 4.71354 4.82541 4.94933 5.06226 5.11399 5.28871 5.34694 5.39645 5.50706 5.52892 5.54863 5.69164 5.71773 5.75206 5.83282 5.87764 5.95687 6.02608 6.07723 6.24529 6.28390 6.39068 6.61568 6.84861 6.92659 7.12108 7.24708 7.29450 7.69254 7.97701 8.11125 8.59984 8.63848 9.26307 9.35085 10.74925 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.037849 B = 0.003782 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.599187 B = 7401.877095 C = 7480.806294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.058 0.942 4 C -0.133 4.133 5 C -0.105 4.105 6 H 0.088 0.912 7 C 0.529 3.471 8 O -0.554 6.554 9 N -0.606 5.606 10 C 0.099 3.901 11 C -0.136 4.136 12 C 0.248 3.752 13 O -0.583 6.583 14 C -0.536 4.536 15 H 0.065 0.935 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.120 3.880 23 C -0.143 4.143 24 C 0.066 3.934 25 O -0.381 6.381 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.381 0.619 36 H 0.268 0.732 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.882 2.109 12.453 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.076 0.924 4 C -0.171 4.171 5 C -0.126 4.126 6 H 0.106 0.894 7 C 0.317 3.683 8 O -0.433 6.433 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.175 4.175 12 C 0.208 3.792 13 O -0.391 6.391 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.129 4.129 17 N -0.535 5.535 18 Si 0.730 3.270 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.002 4.002 23 C -0.181 4.181 24 C -0.010 4.010 25 O -0.300 6.300 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.783 1.249 12.490 15.320 hybrid contribution 1.682 0.290 -0.938 1.948 sum -7.101 1.539 11.552 13.647 Atomic orbital electron populations 1.21753 0.92938 1.03082 1.02327 1.22110 0.95161 0.94862 0.84889 0.92391 1.22109 0.93380 1.03250 0.98360 1.21299 0.97220 1.00195 0.93887 0.89351 1.20038 0.79783 0.84422 0.84066 1.90646 1.57633 1.29196 1.65792 1.48657 1.20578 1.36583 1.27996 1.22200 0.92110 0.90024 0.98082 1.23177 0.94849 1.03494 0.95932 1.19644 0.86842 0.85061 0.87693 1.86135 1.41117 1.37207 1.74639 1.21447 1.08570 0.95469 1.31909 0.91724 1.24982 0.97624 0.94880 0.95454 1.69715 1.34497 1.04391 1.44865 0.86417 0.80569 0.79355 0.80660 1.20381 1.21044 1.19691 1.22421 0.96834 0.96403 0.84528 1.22114 1.01525 1.01047 0.93436 1.22534 0.81035 0.99528 0.97952 1.87914 1.20935 1.78113 1.43080 0.91679 0.91917 0.90980 0.90609 0.89643 0.92465 0.92922 0.89510 0.91333 0.76975 0.92222 0.91062 0.91269 0.90233 0.90389 0.93016 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.56 37.16 0.36 -0.99 16 2 C 0.09 0.98 3.26 -26.68 -0.09 0.89 16 3 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -1.77 4.42 -26.59 -0.12 -1.89 16 5 C -0.10 -1.49 2.24 -91.59 -0.21 -1.69 16 6 H 0.09 1.16 6.92 -51.93 -0.36 0.80 16 7 C 0.53 9.97 6.85 -10.99 -0.08 9.90 16 8 O -0.55 -12.25 16.51 5.56 0.09 -12.16 16 9 N -0.61 -11.91 3.32 -170.37 -0.57 -12.48 16 10 C 0.10 1.73 6.20 -3.06 -0.02 1.71 16 11 C -0.14 -2.84 5.37 -24.89 -0.13 -2.97 16 12 C 0.25 5.89 0.87 -89.50 -0.08 5.81 16 13 O -0.58 -14.57 13.17 -35.23 -0.46 -15.04 16 14 C -0.54 -13.78 8.27 -34.45 -0.28 -14.07 16 15 H 0.06 1.67 7.79 -52.48 -0.41 1.26 16 16 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 17 N -0.90 -22.58 10.76 55.43 0.60 -21.99 16 18 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 22 C 0.12 2.68 6.08 -2.41 -0.01 2.66 16 23 C -0.14 -1.75 5.40 -26.59 -0.14 -1.89 16 24 C 0.07 0.69 6.84 37.20 0.25 0.94 16 25 O -0.38 -4.66 10.41 -35.23 -0.37 -5.03 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.28 7.76 -51.93 -0.40 0.87 16 31 H 0.06 0.94 7.64 -51.93 -0.40 0.54 16 32 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.09 1.89 7.55 -51.93 -0.39 1.50 16 34 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 35 H 0.38 9.45 7.56 45.56 0.34 9.79 16 36 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 37 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 38 H 0.07 1.65 8.09 -51.93 -0.42 1.23 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -28.74 334.79 -7.56 -36.30 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.23 Total: 10.28 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.64 Total: 0.16 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.03 Total: -34.47 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.74 Total: -32.23 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.74 -7.56 -36.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118213850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.084 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds