Wall clock time and date at job start Tue Mar 31 2020 06:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45208 * 109.46838 * 2 1 4 4 C 1.34227 * 117.00096 * 185.11452 * 3 2 1 5 5 O 1.20832 * 119.99834 * 0.15645 * 4 3 2 6 6 C 1.50700 * 120.00084 * 180.15088 * 4 3 2 7 7 C 1.50699 * 112.90728 * 308.75094 * 6 4 3 8 8 O 1.21276 * 120.00053 * 247.74095 * 7 6 4 9 9 N 1.34775 * 119.99829 * 67.74586 * 7 6 4 10 10 C 1.46498 * 120.00291 * 180.44053 * 9 7 6 11 11 C 1.46503 * 120.00152 * 0.44640 * 9 7 6 12 12 H 1.09003 * 109.47157 * 353.48735 * 11 9 7 13 13 C 1.53008 * 109.46815 * 233.49455 * 11 9 7 14 14 C 1.50699 * 109.47461 * 113.49308 * 11 9 7 15 15 H 1.07994 * 119.99673 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99892 * 179.97438 * 14 11 9 17 17 N 1.31520 * 120.00222 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 119.99792 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47319 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47104 * 120.00205 * 18 16 14 21 21 H 1.48500 * 109.47338 * 239.99972 * 18 16 14 22 22 C 1.53783 * 113.61405 * 177.49971 * 6 4 3 23 23 C 1.53785 * 87.17118 * 220.06358 * 22 6 4 24 24 C 1.53779 * 87.08197 * 25.39106 * 23 22 6 25 25 H 1.08999 * 109.47374 * 65.52216 * 1 2 3 26 26 H 1.09003 * 109.46382 * 185.52468 * 1 2 3 27 27 H 1.08996 * 109.47259 * 305.51629 * 1 2 3 28 28 H 1.09006 * 109.47027 * 240.00661 * 2 1 3 29 29 H 1.08992 * 109.47898 * 119.99782 * 2 1 3 30 30 H 1.08996 * 109.46950 * 94.05851 * 10 9 7 31 31 H 1.08999 * 109.47661 * 214.06293 * 10 9 7 32 32 H 1.09004 * 109.46787 * 334.06213 * 10 9 7 33 33 H 1.08992 * 109.47295 * 51.96177 * 13 11 9 34 34 H 1.08999 * 109.46551 * 171.96011 * 13 11 9 35 35 H 1.08998 * 109.46868 * 291.96050 * 13 11 9 36 36 H 0.96997 * 119.99821 * 179.97438 * 17 16 14 37 37 H 1.09001 * 113.61110 * 105.47159 * 22 6 4 38 38 H 1.08997 * 113.61439 * 334.65585 * 22 6 4 39 39 H 1.09003 * 113.61295 * 139.94145 * 23 22 6 40 40 H 1.09000 * 113.61141 * 270.75745 * 23 22 6 41 41 H 1.09002 * 113.61310 * 89.11531 * 24 23 22 42 42 H 1.09003 * 113.61217 * 219.93657 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3401 1.5466 -0.1066 5 8 4.0722 0.5898 -0.1998 6 6 3.9161 2.9392 -0.1102 7 6 3.2493 3.8471 -1.1113 8 8 3.8667 4.2413 -2.0779 9 7 1.9669 4.2211 -0.9323 10 6 1.3156 5.0959 -1.9104 11 6 1.2242 3.7530 0.2405 12 1 1.8273 3.0278 0.7869 13 6 -0.0804 3.0936 -0.2119 14 6 0.9110 4.9232 1.1369 15 1 1.2335 5.9162 0.8609 16 6 0.2130 4.7260 2.3094 17 7 -0.1792 3.5165 2.6458 18 14 -0.1745 6.1764 3.4209 19 1 0.3731 7.4197 2.8213 20 1 -1.6463 6.3061 3.5705 21 1 0.4410 5.9566 4.7543 22 6 5.4521 2.9704 -0.1776 23 6 5.3969 4.1285 0.8327 24 6 4.0452 3.5581 1.2935 25 1 -0.3634 0.4258 -0.9353 26 1 -0.3632 -1.0230 0.0989 27 1 -0.3633 0.5970 0.8364 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5137 0.8899 30 1 0.7797 4.4893 -2.6403 31 1 0.6131 5.7537 -1.3987 32 1 2.0697 5.6958 -2.4201 33 1 0.1367 2.3407 -0.9694 34 1 -0.5636 2.6203 0.6429 35 1 -0.7435 3.8502 -0.6312 36 1 -0.6700 3.3778 3.4709 37 1 5.8404 3.2607 -1.1539 38 1 5.9248 2.0703 0.2153 39 1 6.1742 4.0800 1.5953 40 1 5.3218 5.1111 0.3668 41 1 4.1320 2.8182 2.0892 42 1 3.2983 4.3230 1.5064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121280844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:19 Heat of formation + Delta-G solvation = -105.619989 kcal Electronic energy + Delta-G solvation = -25153.341083 eV Core-core repulsion = 21713.375185 eV Total energy + Delta-G solvation = -3439.965898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.57511 -40.62706 -38.73909 -37.52657 -37.11462 -34.49310 -32.71846 -30.90488 -29.66067 -27.53690 -26.99889 -26.53653 -24.19616 -23.49228 -22.50122 -21.62557 -19.64971 -18.86458 -18.66979 -17.82027 -17.59202 -17.08677 -16.86626 -16.25650 -15.95801 -15.54344 -15.12265 -14.95220 -14.40262 -14.20473 -13.83628 -13.70134 -13.48595 -13.35938 -13.13749 -13.07018 -12.88504 -12.77866 -12.71775 -12.60052 -12.38605 -12.09073 -12.06299 -11.97088 -11.74184 -11.46105 -11.40286 -11.27019 -10.97302 -10.70776 -10.35419 -9.36390 -8.04084 -6.15715 0.92614 1.36490 1.44651 1.50942 1.57987 1.91443 2.27211 2.50533 3.18121 3.25972 3.45768 3.53903 3.73824 3.82448 4.06134 4.13955 4.33206 4.38937 4.57660 4.67993 4.69183 4.75760 4.86245 4.90223 4.94837 4.98026 4.99482 5.01479 5.13638 5.17158 5.22720 5.30250 5.36302 5.49420 5.53714 5.70506 5.90494 6.14568 6.32432 6.62968 6.65507 6.91908 7.21633 7.53233 8.98398 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.008745 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.945678 B = 3201.213061 C = 3835.458527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.330 6.330 4 C 0.481 3.519 5 O -0.524 6.524 6 C -0.115 4.115 7 C 0.532 3.468 8 O -0.583 6.583 9 N -0.583 5.583 10 C 0.090 3.910 11 C 0.253 3.747 12 H 0.075 0.925 13 C -0.123 4.123 14 C -0.538 4.538 15 H 0.049 0.951 16 C 0.038 3.962 17 N -0.897 5.897 18 Si 0.941 3.059 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.282 1.282 22 C -0.096 4.096 23 C -0.124 4.124 24 C -0.116 4.116 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -3.593 -1.818 4.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.245 6.245 4 C 0.325 3.675 5 O -0.414 6.414 6 C -0.119 4.119 7 C 0.318 3.682 8 O -0.466 6.466 9 N -0.312 5.312 10 C -0.052 4.052 11 C 0.153 3.847 12 H 0.093 0.907 13 C -0.181 4.181 14 C -0.576 4.576 15 H 0.067 0.933 16 C -0.164 4.164 17 N -0.535 5.535 18 Si 0.769 3.231 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.208 1.208 22 C -0.134 4.134 23 C -0.161 4.161 24 C -0.153 4.153 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.269 -3.789 -2.191 5.463 hybrid contribution -0.652 0.545 0.588 1.033 sum 2.617 -3.244 -1.603 4.466 Atomic orbital electron populations 1.21905 0.91189 1.03781 1.03310 1.23291 0.96922 0.79926 1.02211 1.87086 1.22887 1.32650 1.81893 1.23136 0.81591 0.91263 0.71539 1.90567 1.61168 1.42852 1.46858 1.22249 0.99297 0.89546 1.00802 1.19591 0.82196 0.81207 0.85164 1.90576 1.65047 1.58802 1.32189 1.48317 1.10936 1.46499 1.25431 1.21534 0.97781 0.94129 0.91781 1.19316 0.90578 0.93953 0.80831 0.90744 1.21970 0.98065 0.98078 1.00031 1.21546 1.36216 0.94176 1.05694 0.93308 1.25322 0.95324 0.97393 0.98368 1.69976 1.38312 1.21027 1.24189 0.85771 0.77621 0.80601 0.79148 1.20024 1.21069 1.20826 1.22852 0.88297 1.00540 1.01687 1.22785 0.96946 0.97515 0.98835 1.23150 0.99927 1.00969 0.91270 0.91943 0.88070 0.91893 0.91276 0.91110 0.92612 0.90630 0.91654 0.95070 0.90497 0.96325 0.92771 0.90102 0.87348 0.87387 0.90377 0.88463 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 8.86 71.98 0.64 -3.33 16 2 C 0.05 1.54 6.25 71.98 0.45 1.99 16 3 O -0.33 -12.63 4.78 -51.38 -0.25 -12.87 16 4 C 0.48 18.78 6.78 71.24 0.48 19.26 16 5 O -0.52 -20.88 15.60 21.94 0.34 -20.53 16 6 C -0.11 -4.34 0.69 -53.09 -0.04 -4.37 16 7 C 0.53 22.40 6.35 87.66 0.56 22.95 16 8 O -0.58 -26.34 15.48 -3.02 -0.05 -26.39 16 9 N -0.58 -24.48 2.75 -826.79 -2.28 -26.76 16 10 C 0.09 3.37 9.49 127.77 1.21 4.59 16 11 C 0.25 11.19 0.85 44.25 0.04 11.23 16 12 H 0.08 3.42 3.02 -2.39 -0.01 3.41 16 13 C -0.12 -5.24 6.76 71.98 0.49 -4.76 16 14 C -0.54 -25.86 6.82 25.60 0.17 -25.69 16 15 H 0.05 2.42 7.72 -2.91 -0.02 2.40 16 16 C 0.04 1.81 5.30 84.65 0.45 2.26 16 17 N -0.90 -44.39 11.42 21.45 0.24 -44.15 16 18 Si 0.94 39.63 29.54 68.60 2.03 41.66 16 19 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.10 -3.08 6.85 31.12 0.21 -2.87 16 23 C -0.12 -3.60 7.81 31.12 0.24 -3.35 16 24 C -0.12 -4.05 5.96 31.18 0.19 -3.87 16 25 H 0.06 1.71 7.01 -2.39 -0.02 1.69 16 26 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 2.04 6.87 -2.39 -0.02 2.03 16 28 H 0.07 2.01 8.02 -2.38 -0.02 1.99 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.79 7.48 -2.39 -0.02 2.78 16 32 H 0.06 2.38 7.30 -2.38 -0.02 2.36 16 33 H 0.03 1.22 5.42 -2.39 -0.01 1.20 16 34 H 0.08 3.50 5.13 -2.39 -0.01 3.49 16 35 H 0.02 0.77 7.81 -2.39 -0.02 0.75 16 36 H 0.26 12.54 8.31 -92.71 -0.77 11.77 16 37 H 0.08 2.69 7.35 -2.39 -0.02 2.67 16 38 H 0.11 3.20 7.46 -2.39 -0.02 3.18 16 39 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.10 3.20 8.09 -2.39 -0.02 3.18 16 42 H 0.09 3.69 5.75 -2.39 -0.01 3.67 16 Total: -1.00 -57.02 323.11 6.16 -50.86 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 1.02 Total: 24.14 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 5.09 Total: 14.05 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -2.03 Total: -70.90 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: 0.05 Total: -59.80 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -57.02 6.16 -50.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121280844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.763 kcal (2) G-P(sol) polarization free energy of solvation -57.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds