Wall clock time and date at job start Tue Mar 31 2020 06:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.67241 * 26.75931 * 4 3 2 6 6 C 1.54443 * 110.76015 * 263.32829 * 4 3 2 7 7 N 1.47317 * 107.18368 * 219.05153 * 6 4 3 8 8 C 1.34779 * 125.93474 * 178.72023 * 7 6 4 9 9 O 1.21283 * 119.99759 * 180.02562 * 8 7 6 10 10 C 1.50693 * 119.99764 * 0.03051 * 8 7 6 11 11 C 1.50700 * 109.46932 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00175 * 359.97438 * 11 10 8 13 13 C 1.37878 * 120.00202 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00043 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99893 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47378 * 89.99949 * 15 13 11 17 17 H 1.48503 * 109.47267 * 210.00358 * 15 13 11 18 18 H 1.48503 * 109.47252 * 329.99941 * 15 13 11 19 19 C 1.46640 * 108.13234 * 358.74189 * 7 6 4 20 20 H 1.09001 * 109.09757 * 268.13083 * 19 7 6 21 21 C 1.51629 * 112.30082 * 147.76454 * 19 7 6 22 22 C 1.53066 * 110.55742 * 292.39280 * 21 19 7 23 23 C 1.53327 * 108.18170 * 303.29274 * 22 21 19 24 24 O 1.42559 * 108.60207 * 60.75103 * 23 22 21 25 25 C 1.42835 * 115.61258 * 297.30293 * 24 23 22 26 26 H 1.08997 * 112.91094 * 288.66361 * 25 24 23 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 31 31 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 32 32 H 1.09007 * 109.89256 * 338.44030 * 6 4 3 33 33 H 1.08998 * 109.89810 * 99.65699 * 6 4 3 34 34 H 1.09004 * 109.47060 * 299.98971 * 10 8 7 35 35 H 1.08992 * 109.47582 * 59.99780 * 10 8 7 36 36 H 0.97003 * 120.00201 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.25628 * 52.67535 * 21 19 7 38 38 H 1.09006 * 109.25640 * 172.11541 * 21 19 7 39 39 H 1.09000 * 109.71931 * 62.96854 * 22 21 19 40 40 H 1.08999 * 109.71671 * 183.62063 * 22 21 19 41 41 H 1.08997 * 109.61288 * 180.48378 * 23 22 21 42 42 H 1.09002 * 109.61805 * 301.01731 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8866 0.5827 -0.4583 6 6 3.9627 1.6709 1.4351 7 7 5.0656 2.6440 1.3519 8 6 5.7826 3.1176 2.3902 9 8 6.6710 3.9204 2.1976 10 6 5.4804 2.6496 3.7904 11 6 6.4173 3.3245 4.7587 12 1 7.1579 4.0221 4.3965 13 6 6.3292 3.0512 6.1073 14 7 7.1472 3.6398 6.9523 15 14 5.0479 1.8451 6.7341 16 1 5.6217 0.4756 6.7472 17 1 4.6422 2.2251 8.1112 18 1 3.8609 1.8759 5.8422 19 6 5.2475 3.0082 -0.0569 20 1 5.9890 2.3458 -0.5036 21 6 5.7168 4.4401 -0.2250 22 6 4.6193 5.4189 0.1998 23 6 3.3639 5.1184 -0.6275 24 8 2.9516 3.7804 -0.3587 25 6 3.8821 2.7616 -0.7280 26 1 3.9640 2.6327 -1.8072 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1690 2.0632 2.0711 33 1 4.3305 0.7267 1.8368 34 1 4.4510 2.9031 4.0439 35 1 5.6137 1.5695 3.8492 36 1 7.0854 3.4473 7.9010 37 1 6.6017 4.6030 0.3902 38 1 5.9696 4.6152 -1.2708 39 1 4.4011 5.2893 1.2598 40 1 4.9465 6.4418 0.0134 41 1 2.5682 5.8093 -0.3491 42 1 3.5903 5.2253 -1.6883 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:46 Heat of formation + Delta-G solvation = -116.527673 kcal Electronic energy + Delta-G solvation = -23925.752634 eV Core-core repulsion = 20485.313743 eV Total energy + Delta-G solvation = -3440.438891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.71646 -38.17759 -37.73308 -35.41922 -33.38212 -32.76734 -31.54121 -30.57143 -29.04077 -28.44164 -24.74721 -24.17321 -23.02228 -22.52920 -21.67673 -20.15065 -18.17512 -17.33675 -16.94065 -16.15568 -16.06704 -15.86624 -15.56316 -15.32652 -14.86079 -14.47395 -14.14181 -13.67995 -13.40263 -13.21464 -12.92420 -12.69258 -12.50837 -12.45237 -12.22163 -11.95330 -11.93230 -11.54891 -11.48211 -11.23158 -10.92904 -10.77397 -10.65336 -10.55638 -10.29589 -9.97650 -9.68370 -9.47078 -9.24008 -8.57293 -8.47563 -8.15001 -6.02565 -4.01981 3.22285 3.26830 3.34719 3.35707 3.47413 3.66401 3.76540 4.37205 4.41720 4.46820 4.84167 4.86592 4.90219 5.06443 5.10229 5.14456 5.20052 5.23507 5.28175 5.37148 5.47583 5.53003 5.58063 5.70096 5.73720 5.75989 5.83417 5.91810 5.98189 6.06616 6.13480 6.43210 6.47763 6.67037 6.91141 6.93836 7.06756 7.36592 7.55678 8.08491 8.55423 9.08391 9.17400 9.56174 11.10382 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014980 B = 0.006106 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.673368 B = 4584.503066 C = 5948.447991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.085 3.915 5 H 0.086 0.914 6 C 0.089 3.911 7 N -0.619 5.619 8 C 0.545 3.455 9 O -0.524 6.524 10 C -0.024 4.024 11 C -0.511 4.511 12 H 0.093 0.907 13 C 0.070 3.930 14 N -0.897 5.897 15 Si 0.872 3.128 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.111 3.889 20 H 0.069 0.931 21 C -0.141 4.141 22 C -0.148 4.148 23 C 0.061 3.939 24 O -0.354 6.354 25 C 0.084 3.916 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.634 -6.367 -18.407 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.271 6.271 4 C 0.026 3.974 5 H 0.104 0.896 6 C -0.035 4.035 7 N -0.358 5.358 8 C 0.337 3.663 9 O -0.399 6.399 10 C -0.063 4.063 11 C -0.549 4.549 12 H 0.111 0.889 13 C -0.132 4.132 14 N -0.536 5.536 15 Si 0.699 3.301 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.190 1.190 19 C 0.007 3.993 20 H 0.087 0.913 21 C -0.179 4.179 22 C -0.186 4.186 23 C -0.016 4.016 24 O -0.272 6.272 25 C 0.025 3.975 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.345 -5.762 -18.120 22.141 hybrid contribution -0.268 -0.931 0.364 1.035 sum -11.613 -6.693 -17.755 22.246 Atomic orbital electron populations 1.21716 0.93681 1.02014 1.03285 1.22597 0.95845 0.84192 1.00021 1.88103 1.18841 1.25546 1.94629 1.23339 0.82551 0.96612 0.94932 0.89598 1.22398 0.90628 0.93141 0.97371 1.48433 1.35984 1.45394 1.05964 1.21108 0.79633 0.79611 0.85991 1.90483 1.31316 1.33574 1.84512 1.19665 0.99577 0.97940 0.89158 1.20992 1.17515 1.26317 0.90114 0.88945 1.24952 0.95646 0.95891 0.96680 1.69891 1.37659 1.43161 1.02862 0.86923 0.82692 0.81895 0.78635 1.20163 1.21055 1.19042 1.21652 0.96043 0.97867 0.83739 0.91292 1.21698 1.01739 0.92545 1.01871 1.22093 0.95478 0.99308 1.01743 1.22633 0.97321 0.83891 0.97757 1.87906 1.41468 1.13799 1.84042 1.23517 0.88913 0.87705 0.97334 0.89340 0.91290 0.91919 0.91663 0.93183 0.93493 0.90048 0.91323 0.93654 0.94279 0.92609 0.87010 0.92033 0.90631 0.91109 0.88997 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.05 0.47 6.49 37.16 0.24 0.71 16 3 O -0.35 -4.48 9.50 -54.42 -0.52 -4.99 16 4 C 0.08 1.02 3.25 -24.47 -0.08 0.95 16 5 H 0.09 0.81 7.82 -51.93 -0.41 0.40 16 6 C 0.09 1.32 6.19 -2.84 -0.02 1.30 16 7 N -0.62 -10.99 3.13 -164.59 -0.51 -11.50 16 8 C 0.54 12.28 7.27 -10.99 -0.08 12.21 16 9 O -0.52 -13.30 12.95 5.56 0.07 -13.22 16 10 C -0.02 -0.58 3.74 -29.04 -0.11 -0.69 16 11 C -0.51 -15.13 9.48 -34.44 -0.33 -15.46 16 12 H 0.09 3.08 7.00 -52.49 -0.37 2.72 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 15 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 19 C 0.11 1.64 3.06 -67.96 -0.21 1.43 16 20 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.14 -2.13 4.99 -27.39 -0.14 -2.26 16 22 C -0.15 -2.20 6.11 -26.53 -0.16 -2.37 16 23 C 0.06 0.77 6.86 37.33 0.26 1.02 16 24 O -0.35 -5.20 9.50 -54.42 -0.52 -5.72 16 25 C 0.08 1.07 3.98 -24.64 -0.10 0.97 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.36 8.11 -51.93 -0.42 -0.06 16 32 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 1.08 7.20 -51.93 -0.37 0.71 16 35 H 0.04 0.90 7.57 -51.93 -0.39 0.51 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.11 2.09 5.49 -51.93 -0.29 1.80 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -34.31 331.25 -7.70 -42.00 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.88 Total: 0.25 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.43 Total: -1.09 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.26 Total: -38.80 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.96 Total: -23.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.31 -7.70 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.525 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds