Wall clock time and date at job start Tue Mar 31 2020 06:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.67241 * 26.75931 * 4 3 2 6 6 C 1.54443 * 110.76015 * 263.32829 * 4 3 2 7 7 N 1.47317 * 107.18368 * 219.05153 * 6 4 3 8 8 C 1.34779 * 125.93474 * 178.72023 * 7 6 4 9 9 O 1.21283 * 119.99759 * 180.02562 * 8 7 6 10 10 C 1.50693 * 119.99764 * 0.03051 * 8 7 6 11 11 C 1.50700 * 109.46932 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00175 * 359.97438 * 11 10 8 13 13 C 1.37878 * 120.00202 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00043 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 119.99893 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47378 * 89.99949 * 15 13 11 17 17 H 1.48503 * 109.47267 * 210.00358 * 15 13 11 18 18 H 1.48503 * 109.47252 * 329.99941 * 15 13 11 19 19 C 1.46640 * 108.13234 * 358.74189 * 7 6 4 20 20 H 1.09001 * 109.09757 * 268.13083 * 19 7 6 21 21 C 1.51629 * 112.30082 * 147.76454 * 19 7 6 22 22 C 1.53066 * 110.55742 * 292.39280 * 21 19 7 23 23 C 1.53327 * 108.18170 * 303.29274 * 22 21 19 24 24 O 1.42559 * 108.60207 * 60.75103 * 23 22 21 25 25 C 1.42835 * 115.61258 * 297.30293 * 24 23 22 26 26 H 1.08997 * 112.91094 * 288.66361 * 25 24 23 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 31 31 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 32 32 H 1.09007 * 109.89256 * 338.44030 * 6 4 3 33 33 H 1.08998 * 109.89810 * 99.65699 * 6 4 3 34 34 H 1.09004 * 109.47060 * 299.98971 * 10 8 7 35 35 H 1.08992 * 109.47582 * 59.99780 * 10 8 7 36 36 H 0.97003 * 120.00201 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.25628 * 52.67535 * 21 19 7 38 38 H 1.09006 * 109.25640 * 172.11541 * 21 19 7 39 39 H 1.09000 * 109.71931 * 62.96854 * 22 21 19 40 40 H 1.08999 * 109.71671 * 183.62063 * 22 21 19 41 41 H 1.08997 * 109.61288 * 180.48378 * 23 22 21 42 42 H 1.09002 * 109.61805 * 301.01731 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8866 0.5827 -0.4583 6 6 3.9627 1.6709 1.4351 7 7 5.0656 2.6440 1.3519 8 6 5.7826 3.1176 2.3902 9 8 6.6710 3.9204 2.1976 10 6 5.4804 2.6496 3.7904 11 6 6.4173 3.3245 4.7587 12 1 7.1579 4.0221 4.3965 13 6 6.3292 3.0512 6.1073 14 7 7.1472 3.6398 6.9523 15 14 5.0479 1.8451 6.7341 16 1 5.6217 0.4756 6.7472 17 1 4.6422 2.2251 8.1112 18 1 3.8609 1.8759 5.8422 19 6 5.2475 3.0082 -0.0569 20 1 5.9890 2.3458 -0.5036 21 6 5.7168 4.4401 -0.2250 22 6 4.6193 5.4189 0.1998 23 6 3.3639 5.1184 -0.6275 24 8 2.9516 3.7804 -0.3587 25 6 3.8821 2.7616 -0.7280 26 1 3.9640 2.6327 -1.8072 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1690 2.0632 2.0711 33 1 4.3305 0.7267 1.8368 34 1 4.4510 2.9031 4.0439 35 1 5.6137 1.5695 3.8492 36 1 7.0854 3.4473 7.9010 37 1 6.6017 4.6030 0.3902 38 1 5.9696 4.6152 -1.2708 39 1 4.4011 5.2893 1.2598 40 1 4.9465 6.4418 0.0134 41 1 2.5682 5.8093 -0.3491 42 1 3.5903 5.2253 -1.6883 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:45 Heat of formation + Delta-G solvation = -141.014224 kcal Electronic energy + Delta-G solvation = -23926.814451 eV Core-core repulsion = 20485.313743 eV Total energy + Delta-G solvation = -3441.500707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92838 -39.63299 -38.70010 -36.71378 -35.11996 -34.35658 -32.70406 -31.82122 -30.71658 -29.53606 -25.85946 -25.83653 -24.27115 -23.51339 -22.76926 -21.44478 -19.67582 -19.02833 -18.29282 -17.48501 -17.24844 -17.11708 -16.70029 -16.39501 -16.20494 -15.95933 -15.72549 -15.06724 -14.74273 -14.44412 -14.29645 -13.98752 -13.69141 -13.55285 -13.45535 -13.36175 -13.04462 -12.86702 -12.76228 -12.44971 -12.34363 -12.06576 -12.03784 -11.91520 -11.61570 -11.55197 -11.34807 -10.83848 -10.81626 -10.42460 -10.05051 -9.55221 -8.30124 -6.38208 1.33798 1.38121 1.48645 1.79253 1.97739 2.33810 2.60123 2.84874 3.02608 3.34147 3.43657 3.83697 3.94314 3.99065 4.05780 4.16678 4.20453 4.27499 4.38486 4.42038 4.49710 4.59620 4.60792 4.62606 4.63002 4.68835 4.75297 4.88010 4.95062 5.01575 5.02834 5.12557 5.18608 5.25161 5.35318 5.43058 5.62907 6.21042 6.23401 6.44067 6.52695 6.79412 7.22164 7.42458 8.87251 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014980 B = 0.006106 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.673368 B = 4584.503066 C = 5948.447991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.374 6.374 4 C 0.094 3.906 5 H 0.124 0.876 6 C 0.078 3.922 7 N -0.613 5.613 8 C 0.539 3.461 9 O -0.568 6.568 10 C -0.019 4.019 11 C -0.531 4.531 12 H 0.032 0.968 13 C 0.006 3.994 14 N -0.950 5.950 15 Si 0.955 3.045 16 H -0.257 1.257 17 H -0.281 1.281 18 H -0.240 1.240 19 C 0.101 3.899 20 H 0.090 0.910 21 C -0.141 4.141 22 C -0.147 4.147 23 C 0.066 3.934 24 O -0.377 6.377 25 C 0.089 3.911 26 H 0.130 0.870 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.269 0.731 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.027 0.973 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 -9.192 -20.858 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.292 6.292 4 C 0.035 3.965 5 H 0.142 0.858 6 C -0.045 4.045 7 N -0.349 5.349 8 C 0.330 3.670 9 O -0.447 6.447 10 C -0.059 4.059 11 C -0.569 4.569 12 H 0.050 0.950 13 C -0.191 4.191 14 N -0.590 5.590 15 Si 0.776 3.224 16 H -0.182 1.182 17 H -0.207 1.207 18 H -0.163 1.163 19 C -0.003 4.003 20 H 0.108 0.892 21 C -0.179 4.179 22 C -0.185 4.185 23 C -0.010 4.010 24 O -0.295 6.295 25 C 0.030 3.970 26 H 0.147 0.853 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.045 0.955 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.952 -8.614 -20.625 26.349 hybrid contribution 0.579 0.020 1.087 1.232 sum -13.374 -8.595 -19.538 25.188 Atomic orbital electron populations 1.21741 0.93268 1.03167 1.02449 1.22839 0.96265 0.82949 1.01323 1.88091 1.18885 1.27691 1.94556 1.23361 0.82781 0.97716 0.92655 0.85844 1.22699 0.89196 0.92723 0.99896 1.48244 1.35340 1.44841 1.06483 1.20712 0.80006 0.79644 0.86656 1.90487 1.33466 1.35488 1.85243 1.19509 0.98285 0.98479 0.89606 1.21121 1.17700 1.26137 0.91957 0.94954 1.26055 0.98347 0.98188 0.96494 1.70076 1.40114 1.45292 1.03508 0.85618 0.79719 0.78987 0.78069 1.18161 1.20701 1.16317 1.22011 0.98505 0.97837 0.81903 0.89231 1.21636 0.99934 0.93258 1.03048 1.22060 0.97131 1.00031 0.99310 1.22682 0.95997 0.83419 0.98888 1.87884 1.42301 1.14704 1.84639 1.23756 0.86672 0.87374 0.99151 0.85320 0.89166 0.92137 0.93113 0.92751 0.91207 0.91897 0.89552 0.92875 0.92063 0.92213 0.91363 0.88421 0.95450 0.90249 0.88332 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.63 6.49 71.98 0.47 1.10 16 3 O -0.37 -8.18 9.50 -130.63 -1.24 -9.42 16 4 C 0.09 1.90 3.25 32.06 0.10 2.00 16 5 H 0.12 1.61 7.82 -2.38 -0.02 1.59 16 6 C 0.08 2.14 6.19 86.71 0.54 2.68 16 7 N -0.61 -21.38 3.13 -793.02 -2.48 -23.86 16 8 C 0.54 25.16 7.27 87.65 0.64 25.80 16 9 O -0.57 -30.91 12.95 -3.04 -0.04 -30.95 16 10 C -0.02 -0.95 3.74 29.10 0.11 -0.84 16 11 C -0.53 -33.06 9.48 25.60 0.24 -32.82 16 12 H 0.03 2.34 7.00 -2.91 -0.02 2.32 16 13 C 0.01 0.36 5.47 84.66 0.46 0.82 16 14 N -0.95 -61.92 13.96 21.45 0.30 -61.63 16 15 Si 0.95 43.78 27.47 68.60 1.88 45.66 16 16 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 19 C 0.10 2.76 3.06 44.89 0.14 2.90 16 20 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 21 C -0.14 -4.19 4.99 30.17 0.15 -4.04 16 22 C -0.15 -4.41 6.11 30.73 0.19 -4.22 16 23 C 0.07 1.54 6.86 72.09 0.49 2.03 16 24 O -0.38 -10.09 9.50 -130.63 -1.24 -11.33 16 25 C 0.09 1.91 3.98 31.95 0.13 2.04 16 26 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.74 8.11 -2.39 -0.02 0.72 16 32 H 0.06 1.97 8.06 -2.38 -0.02 1.95 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 2.53 7.20 -2.38 -0.02 2.51 16 35 H 0.06 2.74 7.57 -2.39 -0.02 2.72 16 36 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 37 H 0.07 2.68 5.49 -2.39 -0.01 2.67 16 38 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.03 1.06 7.70 -2.39 -0.02 1.04 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -81.76 331.25 2.52 -79.25 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.94 Total: 16.11 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.40 Total: -3.84 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -2.18 Total: -85.48 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -2.52 Total: -51.70 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -81.76 2.52 -79.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.767 kcal (2) G-P(sol) polarization free energy of solvation -81.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds