Wall clock time and date at job start Tue Mar 31 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00207 * 2 1 4 4 C 1.53010 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47047 * 64.99689 * 4 3 2 6 6 C 1.37100 * 120.00118 * 91.67281 * 5 4 3 7 7 H 1.08006 * 119.99756 * 221.26941 * 6 5 4 8 8 C 1.38948 * 120.00105 * 41.53375 * 6 5 4 9 9 N 1.31413 * 120.00172 * 209.09039 * 8 6 5 10 10 Si 1.86800 * 119.99929 * 29.09446 * 8 6 5 11 11 H 1.48501 * 109.47315 * 95.49599 * 10 8 6 12 12 H 1.48499 * 109.47086 * 215.50251 * 10 8 6 13 13 H 1.48501 * 109.46954 * 335.49939 * 10 8 6 14 14 C 1.34772 * 120.00251 * 271.66370 * 5 4 3 15 15 O 1.21294 * 119.99852 * 5.35160 * 14 5 4 16 16 C 1.50704 * 120.00185 * 185.34642 * 14 5 4 17 17 H 1.08998 * 109.41117 * 33.26479 * 16 14 5 18 18 C 1.52953 * 109.41540 * 273.47185 * 16 14 5 19 19 C 1.53236 * 109.40352 * 176.29584 * 18 16 14 20 20 C 1.51264 * 108.53515 * 54.63012 * 19 18 16 21 21 O 1.20760 * 120.85306 * 128.67482 * 20 19 18 22 22 C 1.51274 * 118.30111 * 308.64969 * 20 19 18 23 23 C 1.52961 * 109.41254 * 153.11896 * 16 14 5 24 24 H 1.09009 * 109.48015 * 303.70174 * 23 16 14 25 25 C 1.53006 * 109.48354 * 63.72619 * 23 16 14 26 26 H 1.09000 * 109.47408 * 300.00673 * 1 2 3 27 27 H 1.09002 * 109.46660 * 60.00277 * 1 2 3 28 28 H 1.09003 * 109.47434 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47621 * 60.00100 * 3 2 1 30 30 H 1.08998 * 109.46809 * 299.99314 * 3 2 1 31 31 H 1.09002 * 109.46667 * 304.99657 * 4 3 2 32 32 H 1.08997 * 109.47092 * 185.00195 * 4 3 2 33 33 H 0.97001 * 119.99827 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.48375 * 296.27554 * 18 16 14 35 35 H 1.08999 * 109.48103 * 56.31611 * 18 16 14 36 36 H 1.08997 * 109.62093 * 294.91424 * 19 18 16 37 37 H 1.08998 * 109.77920 * 174.43544 * 19 18 16 38 38 H 1.08999 * 109.62418 * 291.63402 * 22 20 19 39 39 H 1.08998 * 109.78503 * 171.15428 * 22 20 19 40 40 H 1.08997 * 109.46957 * 60.00019 * 25 23 16 41 41 H 1.08999 * 109.47148 * 180.02562 * 25 23 16 42 42 H 1.09001 * 109.46991 * 300.00079 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5637 -1.2508 6 6 4.3013 1.3477 -2.3277 7 1 3.9924 1.0559 -3.3206 8 6 5.0323 2.5146 -2.1423 9 7 4.8776 3.5251 -2.9681 10 14 6.2352 2.6471 -0.7193 11 1 7.6000 2.3000 -1.1908 12 1 6.2309 4.0365 -0.1953 13 1 5.8310 1.7100 0.3594 14 6 4.0637 -0.7780 -1.3435 15 8 3.6852 -1.4751 -0.4258 16 6 4.6311 -1.4122 -2.5872 17 1 5.4064 -0.7676 -3.0012 18 6 3.5170 -1.5925 -3.6196 19 6 4.1107 -2.1515 -4.9169 20 6 4.8699 -3.4187 -4.5915 21 8 4.6639 -4.4387 -5.2042 22 6 5.8941 -3.3755 -3.4790 23 6 5.2357 -2.7721 -2.2340 24 1 5.9844 -2.6450 -1.4520 25 6 4.1319 -3.7076 -1.7363 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8462 -0.8900 31 1 3.8507 0.5684 0.8428 32 1 3.9786 2.1763 0.0902 33 1 5.3877 4.3399 -2.8385 34 1 2.7713 -2.2868 -3.2323 35 1 3.0477 -0.6293 -3.8200 36 1 4.7901 -1.4196 -5.3537 37 1 3.3105 -2.3751 -5.6225 38 1 6.7386 -2.7570 -3.7828 39 1 6.2406 -4.3848 -3.2572 40 1 3.3836 -3.8350 -2.5185 41 1 4.5631 -4.6764 -1.4842 42 1 3.6629 -3.2776 -0.8513 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160822828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:29 Heat of formation + Delta-G solvation = -116.050747 kcal Electronic energy + Delta-G solvation = -24319.233637 eV Core-core repulsion = 20878.815427 eV Total energy + Delta-G solvation = -3440.418210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.17711 -38.75350 -37.23164 -35.96767 -34.74023 -32.09925 -31.68681 -29.87992 -28.49279 -26.74794 -25.76750 -24.73424 -22.76405 -22.41754 -20.90870 -19.08029 -18.13332 -17.01788 -16.25963 -15.82748 -15.75319 -15.44567 -15.08010 -14.76952 -14.56718 -14.45014 -14.02276 -13.74577 -13.46718 -13.14440 -12.63910 -12.50654 -12.34457 -12.12153 -12.00553 -11.80927 -11.38282 -11.24973 -11.16795 -11.13160 -10.89446 -10.63907 -10.44156 -10.41559 -10.24534 -9.95162 -9.92117 -9.15137 -9.08346 -9.04101 -8.18396 -7.70713 -6.60556 -4.13207 2.19674 3.03252 3.17491 3.24177 3.77896 4.06960 4.30358 4.39661 4.45087 4.82663 5.00994 5.10805 5.34668 5.42824 5.50732 5.58624 5.67737 5.68412 5.73309 5.83851 5.89685 5.93881 5.99469 6.02091 6.06688 6.08372 6.17721 6.24757 6.29608 6.33146 6.42456 6.54641 6.63143 6.69329 6.82162 7.09395 7.36275 7.72076 7.77038 8.09673 8.26089 8.95732 9.38117 9.79255 10.50217 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.007487 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.286770 B = 3738.737105 C = 4721.171086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.462 5.462 6 C -0.350 4.350 7 H 0.102 0.898 8 C 0.074 3.926 9 N -0.847 5.847 10 Si 0.852 3.148 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.254 1.254 14 C 0.492 3.508 15 O -0.569 6.569 16 C -0.092 4.092 17 H 0.101 0.899 18 C -0.099 4.099 19 C -0.167 4.167 20 C 0.369 3.631 21 O -0.474 6.474 22 C -0.167 4.167 23 C -0.063 4.063 24 H 0.078 0.922 25 C -0.169 4.169 26 H 0.030 0.970 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.274 0.726 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 -4.609 1.460 5.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C -0.028 4.028 4 C -0.004 4.004 5 N -0.183 5.183 6 C -0.477 4.477 7 H 0.119 0.881 8 C -0.135 4.135 9 N -0.481 5.481 10 Si 0.677 3.323 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.178 1.178 14 C 0.282 3.718 15 O -0.452 6.452 16 C -0.113 4.113 17 H 0.119 0.881 18 C -0.137 4.137 19 C -0.205 4.205 20 C 0.246 3.754 21 O -0.348 6.348 22 C -0.204 4.204 23 C -0.082 4.082 24 H 0.096 0.904 25 C -0.225 4.225 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.704 -5.428 1.534 5.892 hybrid contribution 0.586 0.898 0.489 1.179 sum -1.117 -4.529 2.023 5.085 Atomic orbital electron populations 1.22634 0.83178 1.01751 0.98931 1.88161 1.17563 1.27169 1.95101 1.22987 0.95470 0.84942 0.99443 1.21621 0.91342 0.98089 0.89391 1.43584 1.58740 1.04370 1.11652 1.18991 1.35776 1.04447 0.88466 0.88078 1.25412 0.96396 0.94821 0.96831 1.69892 1.37012 1.02659 1.38506 0.87313 0.82998 0.78113 0.83869 1.20234 1.20843 1.17825 1.20226 0.80704 0.82583 0.88335 1.90420 1.52075 1.61305 1.41380 1.21085 0.99154 0.95859 0.95247 0.88114 1.21418 0.97692 1.02290 0.92255 1.22315 1.01221 0.97109 0.99848 1.24946 0.80798 0.88742 0.80882 1.90355 1.61559 1.34592 1.48331 1.22421 0.98737 1.03371 0.95917 1.20867 0.97970 0.94306 0.95068 0.90353 1.22362 0.98121 0.97844 1.04219 0.95171 0.94806 0.90457 0.94304 0.92632 0.91028 0.90592 0.91533 0.91280 0.89701 0.88072 0.89756 0.88509 0.89740 0.93894 0.94296 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.14 9.08 -51.03 -0.46 -7.61 16 3 C 0.05 0.94 6.28 37.16 0.23 1.17 16 4 C 0.12 2.50 4.09 -4.04 -0.02 2.48 16 5 N -0.46 -10.24 2.06 -114.81 -0.24 -10.48 16 6 C -0.35 -8.23 8.28 -14.93 -0.12 -8.35 16 7 H 0.10 2.47 6.32 -52.48 -0.33 2.14 16 8 C 0.07 1.79 5.11 -17.47 -0.09 1.70 16 9 N -0.85 -21.61 13.96 55.50 0.77 -20.84 16 10 Si 0.85 18.49 26.30 -169.99 -4.47 14.01 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.25 -5.44 5.76 56.52 0.33 -5.11 16 14 C 0.49 10.47 6.35 -10.99 -0.07 10.40 16 15 O -0.57 -12.98 11.85 -10.25 -0.12 -13.10 16 16 C -0.09 -1.64 1.44 -91.81 -0.13 -1.78 16 17 H 0.10 1.83 7.23 -51.93 -0.38 1.45 16 18 C -0.10 -1.62 4.79 -26.63 -0.13 -1.75 16 19 C -0.17 -2.39 6.17 -27.48 -0.17 -2.56 16 20 C 0.37 5.65 5.75 -28.48 -0.16 5.49 16 21 O -0.47 -8.50 17.89 6.00 0.11 -8.39 16 22 C -0.17 -2.31 5.65 -27.48 -0.16 -2.46 16 23 C -0.06 -1.01 2.53 -90.52 -0.23 -1.24 16 24 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 25 C -0.17 -2.81 8.30 37.16 0.31 -2.50 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.53 7.55 -51.93 -0.39 1.13 16 32 H 0.08 1.57 4.62 -51.93 -0.24 1.33 16 33 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 34 H 0.07 1.17 6.20 -51.93 -0.32 0.85 16 35 H 0.08 1.50 6.73 -51.93 -0.35 1.15 16 36 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.71 5.61 -51.93 -0.29 0.42 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.11 2.11 5.10 -51.93 -0.27 1.84 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -28.07 324.09 -5.58 -33.65 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.43 Total: 5.67 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 0.38 Total: 2.21 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.54 Total: -31.32 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.48 Total: -29.10 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -4.47 Total: 14.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.07 -5.58 -33.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160822828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.405 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds