Wall clock time and date at job start Tue Mar 31 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00207 * 2 1 4 4 C 1.53010 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47047 * 64.99689 * 4 3 2 6 6 C 1.37100 * 120.00118 * 91.67281 * 5 4 3 7 7 H 1.08006 * 119.99756 * 221.26941 * 6 5 4 8 8 C 1.38948 * 120.00105 * 41.53375 * 6 5 4 9 9 N 1.31413 * 120.00172 * 209.09039 * 8 6 5 10 10 Si 1.86800 * 119.99929 * 29.09446 * 8 6 5 11 11 H 1.48501 * 109.47315 * 95.49599 * 10 8 6 12 12 H 1.48499 * 109.47086 * 215.50251 * 10 8 6 13 13 H 1.48501 * 109.46954 * 335.49939 * 10 8 6 14 14 C 1.34772 * 120.00251 * 271.66370 * 5 4 3 15 15 O 1.21294 * 119.99852 * 5.35160 * 14 5 4 16 16 C 1.50704 * 120.00185 * 185.34642 * 14 5 4 17 17 H 1.08998 * 109.41117 * 33.26479 * 16 14 5 18 18 C 1.52953 * 109.41540 * 273.47185 * 16 14 5 19 19 C 1.53236 * 109.40352 * 176.29584 * 18 16 14 20 20 C 1.51264 * 108.53515 * 54.63012 * 19 18 16 21 21 O 1.20760 * 120.85306 * 128.67482 * 20 19 18 22 22 C 1.51274 * 118.30111 * 308.64969 * 20 19 18 23 23 C 1.52961 * 109.41254 * 153.11896 * 16 14 5 24 24 H 1.09009 * 109.48015 * 303.70174 * 23 16 14 25 25 C 1.53006 * 109.48354 * 63.72619 * 23 16 14 26 26 H 1.09000 * 109.47408 * 300.00673 * 1 2 3 27 27 H 1.09002 * 109.46660 * 60.00277 * 1 2 3 28 28 H 1.09003 * 109.47434 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47621 * 60.00100 * 3 2 1 30 30 H 1.08998 * 109.46809 * 299.99314 * 3 2 1 31 31 H 1.09002 * 109.46667 * 304.99657 * 4 3 2 32 32 H 1.08997 * 109.47092 * 185.00195 * 4 3 2 33 33 H 0.97001 * 119.99827 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.48375 * 296.27554 * 18 16 14 35 35 H 1.08999 * 109.48103 * 56.31611 * 18 16 14 36 36 H 1.08997 * 109.62093 * 294.91424 * 19 18 16 37 37 H 1.08998 * 109.77920 * 174.43544 * 19 18 16 38 38 H 1.08999 * 109.62418 * 291.63402 * 22 20 19 39 39 H 1.08998 * 109.78503 * 171.15428 * 22 20 19 40 40 H 1.08997 * 109.46957 * 60.00019 * 25 23 16 41 41 H 1.08999 * 109.47148 * 180.02562 * 25 23 16 42 42 H 1.09001 * 109.46991 * 300.00079 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5637 -1.2508 6 6 4.3013 1.3477 -2.3277 7 1 3.9924 1.0559 -3.3206 8 6 5.0323 2.5146 -2.1423 9 7 4.8776 3.5251 -2.9681 10 14 6.2352 2.6471 -0.7193 11 1 7.6000 2.3000 -1.1908 12 1 6.2309 4.0365 -0.1953 13 1 5.8310 1.7100 0.3594 14 6 4.0637 -0.7780 -1.3435 15 8 3.6852 -1.4751 -0.4258 16 6 4.6311 -1.4122 -2.5872 17 1 5.4064 -0.7676 -3.0012 18 6 3.5170 -1.5925 -3.6196 19 6 4.1107 -2.1515 -4.9169 20 6 4.8699 -3.4187 -4.5915 21 8 4.6639 -4.4387 -5.2042 22 6 5.8941 -3.3755 -3.4790 23 6 5.2357 -2.7721 -2.2340 24 1 5.9844 -2.6450 -1.4520 25 6 4.1319 -3.7076 -1.7363 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8462 -0.8900 31 1 3.8507 0.5684 0.8428 32 1 3.9786 2.1763 0.0902 33 1 5.3877 4.3399 -2.8385 34 1 2.7713 -2.2868 -3.2323 35 1 3.0477 -0.6293 -3.8200 36 1 4.7901 -1.4196 -5.3537 37 1 3.3105 -2.3751 -5.6225 38 1 6.7386 -2.7570 -3.7828 39 1 6.2406 -4.3848 -3.2572 40 1 3.3836 -3.8350 -2.5185 41 1 4.5631 -4.6764 -1.4842 42 1 3.6629 -3.2776 -0.8513 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160822828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:28 Heat of formation + Delta-G solvation = -131.854425 kcal Electronic energy + Delta-G solvation = -24319.918936 eV Core-core repulsion = 20878.815427 eV Total energy + Delta-G solvation = -3441.103509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58867 -40.25440 -38.67367 -37.41458 -36.45366 -33.91709 -32.97685 -31.38648 -29.83771 -28.10824 -27.10581 -26.50811 -24.18880 -23.82746 -22.28353 -20.73971 -19.54376 -18.57540 -17.90037 -17.38872 -17.14281 -16.92982 -16.37427 -16.22621 -16.05347 -15.81969 -15.51664 -15.24163 -14.86535 -14.67280 -14.22912 -14.06897 -13.73456 -13.55020 -13.42945 -13.23611 -12.83981 -12.65667 -12.64598 -12.48207 -12.44247 -12.13806 -11.97759 -11.86525 -11.67054 -11.58430 -11.30341 -10.93101 -10.48822 -10.33895 -9.84901 -9.48804 -8.46855 -6.00050 0.97306 1.29485 1.42552 1.50250 2.10067 2.27869 2.70499 3.01271 3.08043 3.20706 3.74304 3.83236 4.04488 4.11225 4.26169 4.31165 4.32871 4.38052 4.43233 4.50751 4.55271 4.57109 4.59357 4.67543 4.72113 4.82554 4.84099 4.90451 4.96147 5.01072 5.03437 5.10389 5.23153 5.30301 5.46870 5.54284 5.71916 6.25857 6.37797 6.48277 6.51024 7.12212 7.62001 8.05811 8.67215 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.007487 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.286770 B = 3738.737105 C = 4721.171086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.056 3.944 4 C 0.112 3.888 5 N -0.472 5.472 6 C -0.341 4.341 7 H 0.086 0.914 8 C 0.043 3.957 9 N -0.883 5.883 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.280 1.280 13 H -0.252 1.252 14 C 0.487 3.513 15 O -0.585 6.585 16 C -0.090 4.090 17 H 0.100 0.900 18 C -0.089 4.089 19 C -0.161 4.161 20 C 0.374 3.626 21 O -0.500 6.500 22 C -0.159 4.159 23 C -0.059 4.059 24 H 0.079 0.921 25 C -0.162 4.162 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.277 0.723 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 -5.173 1.744 5.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.312 6.312 3 C -0.022 4.022 4 C -0.011 4.011 5 N -0.194 5.194 6 C -0.468 4.468 7 H 0.104 0.896 8 C -0.163 4.163 9 N -0.519 5.519 10 Si 0.725 3.275 11 H -0.204 1.204 12 H -0.206 1.206 13 H -0.176 1.176 14 C 0.277 3.723 15 O -0.468 6.468 16 C -0.111 4.111 17 H 0.118 0.882 18 C -0.127 4.127 19 C -0.199 4.199 20 C 0.253 3.747 21 O -0.376 6.376 22 C -0.196 4.196 23 C -0.078 4.078 24 H 0.098 0.902 25 C -0.219 4.219 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.210 -5.992 1.831 6.381 hybrid contribution 0.334 1.031 0.430 1.166 sum -0.876 -4.960 2.261 5.521 Atomic orbital electron populations 1.22828 0.80889 1.02948 1.00215 1.88105 1.20167 1.27537 1.95346 1.22871 0.94140 0.85018 1.00167 1.21694 0.92974 0.97772 0.88671 1.43715 1.59245 1.04740 1.11696 1.18862 1.35247 1.04295 0.88359 0.89640 1.25812 0.97312 0.94590 0.98585 1.69941 1.38239 1.03311 1.40397 0.86555 0.81095 0.78092 0.81795 1.20376 1.20569 1.17577 1.20819 0.80048 0.82251 0.89188 1.90427 1.52572 1.61504 1.42336 1.21112 0.99317 0.96682 0.93965 0.88229 1.21275 0.97111 1.01353 0.93009 1.22283 1.01773 0.97073 0.98729 1.25158 0.80597 0.88317 0.80673 1.90359 1.62425 1.35388 1.49473 1.22394 0.98770 1.04453 0.94032 1.20825 0.97724 0.93050 0.96215 0.90232 1.22242 0.98217 0.98599 1.02859 0.92923 0.94388 0.89392 0.91375 0.93962 0.91674 0.90597 0.91274 0.92079 0.91271 0.86433 0.88861 0.86061 0.88451 0.94249 0.92682 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.39 -15.23 9.08 -133.88 -1.22 -16.45 16 3 C 0.06 2.07 6.28 71.99 0.45 2.52 16 4 C 0.11 4.65 4.09 86.38 0.35 5.00 16 5 N -0.47 -20.84 2.06 -635.53 -1.31 -22.14 16 6 C -0.34 -16.01 8.28 84.04 0.70 -15.32 16 7 H 0.09 4.24 6.32 -2.91 -0.02 4.22 16 8 C 0.04 2.06 5.11 84.93 0.43 2.49 16 9 N -0.88 -45.13 13.96 21.66 0.30 -44.83 16 10 Si 0.90 37.64 26.30 68.60 1.80 39.44 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 13 H -0.25 -10.34 5.76 99.48 0.57 -9.77 16 14 C 0.49 20.56 6.35 87.66 0.56 21.12 16 15 O -0.58 -26.62 11.85 12.03 0.14 -26.47 16 16 C -0.09 -3.11 1.44 -11.57 -0.02 -3.13 16 17 H 0.10 3.49 7.23 -2.39 -0.02 3.48 16 18 C -0.09 -2.89 4.79 30.66 0.15 -2.74 16 19 C -0.16 -4.32 6.17 30.11 0.19 -4.14 16 20 C 0.37 10.63 5.75 29.46 0.17 10.80 16 21 O -0.50 -16.99 17.89 -1.45 -0.03 -17.02 16 22 C -0.16 -3.96 5.65 30.11 0.17 -3.79 16 23 C -0.06 -1.79 2.53 -10.73 -0.03 -1.81 16 24 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 25 C -0.16 -5.21 8.30 71.98 0.60 -4.61 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 2.75 7.55 -2.39 -0.02 2.73 16 32 H 0.08 3.08 4.62 -2.39 -0.01 3.07 16 33 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 34 H 0.06 2.05 6.20 -2.39 -0.01 2.04 16 35 H 0.07 2.45 6.73 -2.39 -0.02 2.44 16 36 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 38 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.04 1.26 5.61 -2.39 -0.01 1.25 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 3.17 5.10 -2.39 -0.01 3.15 16 Total: -1.00 -59.13 324.09 5.55 -53.58 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.88 Total: 25.45 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 4.97 Total: 8.44 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -1.00 Total: -66.97 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -1.10 Total: -59.94 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 1.80 Total: 39.44 kcal Total: -59.13 5.55 -53.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160822828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.272 kcal (2) G-P(sol) polarization free energy of solvation -59.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds