Wall clock time and date at job start Tue Mar 31 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00292 * 2 1 4 4 C 1.52998 * 109.47157 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47455 * 65.00027 * 4 3 2 6 6 C 1.37093 * 120.00372 * 93.31123 * 5 4 3 7 7 H 1.08002 * 120.00230 * 221.74143 * 6 5 4 8 8 C 1.38953 * 120.00125 * 42.01004 * 6 5 4 9 9 N 1.31415 * 119.99751 * 6.35748 * 8 6 5 10 10 Si 1.86800 * 120.00238 * 186.35497 * 8 6 5 11 11 H 1.48499 * 109.46957 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47083 * 120.00272 * 10 8 6 13 13 H 1.48496 * 109.47053 * 240.00392 * 10 8 6 14 14 C 1.34781 * 119.99544 * 273.31050 * 5 4 3 15 15 O 1.21286 * 120.00153 * 355.20323 * 14 5 4 16 16 C 1.50702 * 119.99688 * 175.20285 * 14 5 4 17 17 H 1.09002 * 109.41542 * 335.25353 * 16 14 5 18 18 C 1.52954 * 109.41620 * 95.11358 * 16 14 5 19 19 C 1.53218 * 109.40961 * 183.70082 * 18 16 14 20 20 C 1.51274 * 108.53926 * 305.37936 * 19 18 16 21 21 O 1.20762 * 120.84865 * 231.36495 * 20 19 18 22 22 C 1.51264 * 118.29967 * 51.33877 * 20 19 18 23 23 C 1.52962 * 109.41044 * 215.47032 * 16 14 5 24 24 H 1.09001 * 109.48187 * 296.26819 * 23 16 14 25 25 C 1.52991 * 109.48487 * 56.31708 * 23 16 14 26 26 H 1.09002 * 109.47011 * 300.00284 * 1 2 3 27 27 H 1.08996 * 109.47021 * 60.00231 * 1 2 3 28 28 H 1.09001 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47156 * 59.99845 * 3 2 1 30 30 H 1.09002 * 109.46244 * 299.99910 * 3 2 1 31 31 H 1.09001 * 109.47239 * 304.99333 * 4 3 2 32 32 H 1.09008 * 109.46999 * 184.99666 * 4 3 2 33 33 H 0.97001 * 119.99774 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.48257 * 303.68788 * 18 16 14 35 35 H 1.09006 * 109.47829 * 63.71890 * 18 16 14 36 36 H 1.09004 * 109.62401 * 65.08712 * 19 18 16 37 37 H 1.08995 * 109.63047 * 185.46827 * 19 18 16 38 38 H 1.09002 * 109.62549 * 68.37683 * 22 20 19 39 39 H 1.09000 * 109.62570 * 188.93637 * 22 20 19 40 40 H 1.09002 * 109.47398 * 64.40769 * 25 23 16 41 41 H 1.09003 * 109.47158 * 184.40444 * 25 23 16 42 42 H 1.09001 * 109.47398 * 304.40651 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3316 1.3495 -2.3187 7 1 4.0207 1.0784 -3.3168 8 6 5.0971 2.4913 -2.1156 9 7 5.5850 2.7518 -0.9235 10 14 5.4329 3.6558 -3.5371 11 1 4.7760 3.1402 -4.7651 12 1 4.8916 5.0003 -3.2140 13 1 6.8975 3.7527 -3.7622 14 6 4.0309 -0.7783 -1.3566 15 8 3.8003 -1.4715 -0.3884 16 6 4.3791 -1.4183 -2.6758 17 1 4.1262 -0.7360 -3.4874 18 6 5.8779 -1.7207 -2.7143 19 6 6.2482 -2.2859 -4.0895 20 6 5.3638 -3.4801 -4.3726 21 8 5.8399 -4.5363 -4.7135 22 6 3.8680 -3.3176 -4.2173 23 6 3.5840 -2.7150 -2.8373 24 1 3.8816 -3.4227 -2.0635 25 6 2.0891 -2.4164 -2.7087 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8515 0.5682 0.8410 32 1 3.9786 2.1765 0.0889 33 1 6.1196 3.5487 -0.7818 34 1 6.4386 -0.8033 -2.5353 35 1 6.1212 -2.4518 -1.9432 36 1 6.0901 -1.5242 -4.8530 37 1 7.2940 -2.5930 -4.0897 38 1 3.4896 -2.6514 -4.9926 39 1 3.3836 -4.2907 -4.2986 40 1 1.7755 -1.7712 -3.5294 41 1 1.5276 -3.3499 -2.7456 42 1 1.8989 -1.9153 -1.7596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160822829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:31 Heat of formation + Delta-G solvation = -131.131819 kcal Electronic energy + Delta-G solvation = -24258.113067 eV Core-core repulsion = 20817.040893 eV Total energy + Delta-G solvation = -3441.072174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.95579 -38.60748 -37.08882 -35.82518 -34.60251 -32.16141 -31.54968 -29.77230 -28.35264 -26.53466 -25.71451 -24.79055 -22.73322 -21.73616 -20.48431 -19.11251 -18.81115 -16.98321 -16.07851 -15.62516 -15.39105 -15.27675 -15.21501 -14.50532 -14.48125 -14.36878 -14.29316 -13.71195 -13.33654 -12.94597 -12.51809 -12.24596 -11.99625 -11.81731 -11.76612 -11.69123 -11.34662 -11.31850 -11.18802 -11.10404 -10.86290 -10.55003 -10.48175 -10.34635 -10.27517 -10.17472 -9.86479 -9.13601 -9.08642 -8.99454 -8.23890 -7.41918 -6.34861 -4.17161 2.16519 3.06466 3.16961 3.18685 3.96391 4.08878 4.35623 4.52882 4.73229 4.93732 5.03623 5.10355 5.30080 5.51138 5.54888 5.66290 5.68698 5.71058 5.77870 5.86822 5.97715 6.04092 6.06442 6.10054 6.13226 6.15714 6.28670 6.30861 6.40773 6.50277 6.57494 6.72832 6.83462 6.87787 6.98376 7.26675 7.48176 7.69848 7.88741 8.02765 8.39411 9.07880 9.57365 10.02942 10.64878 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.008150 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.535191 B = 3434.595531 C = 5007.910454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.113 3.887 5 N -0.445 5.445 6 C -0.328 4.328 7 H 0.087 0.913 8 C 0.040 3.960 9 N -0.873 5.873 10 Si 0.915 3.085 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.497 3.503 15 O -0.583 6.583 16 C -0.094 4.094 17 H 0.093 0.907 18 C -0.095 4.095 19 C -0.167 4.167 20 C 0.366 3.634 21 O -0.473 6.473 22 C -0.164 4.164 23 C -0.066 4.066 24 H 0.079 0.921 25 C -0.147 4.147 26 H 0.029 0.971 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.129 0.871 33 H 0.269 0.731 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -2.229 -4.182 6.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.029 4.029 4 C -0.011 4.011 5 N -0.164 5.164 6 C -0.456 4.456 7 H 0.104 0.896 8 C -0.164 4.164 9 N -0.512 5.512 10 Si 0.741 3.259 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.206 1.206 14 C 0.285 3.715 15 O -0.466 6.466 16 C -0.115 4.115 17 H 0.111 0.889 18 C -0.133 4.133 19 C -0.204 4.204 20 C 0.243 3.757 21 O -0.347 6.347 22 C -0.202 4.202 23 C -0.085 4.085 24 H 0.097 0.903 25 C -0.204 4.204 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.570 -3.119 -3.773 6.696 hybrid contribution -0.118 1.241 -0.744 1.451 sum -4.688 -1.878 -4.517 6.775 Atomic orbital electron populations 1.22618 0.83646 1.01544 0.98786 1.88160 1.17238 1.28113 1.95034 1.23177 0.96928 0.84240 0.98599 1.21629 0.88791 1.02723 0.87948 1.43255 1.57632 1.03337 1.12175 1.19450 1.31131 1.06774 0.88232 0.89556 1.25447 0.94843 0.98996 0.97119 1.69674 1.33059 1.27075 1.21364 0.86055 0.78353 0.80155 0.81293 1.19274 1.20728 1.20629 1.20074 0.79389 0.83065 0.88967 1.90541 1.53797 1.62741 1.39503 1.21195 0.95097 0.96275 0.98916 0.88878 1.21313 0.95612 1.02012 0.94404 1.22319 1.00103 0.97781 1.00244 1.25026 0.92523 0.88254 0.69882 1.90359 1.78701 1.30160 1.35526 1.22423 0.94435 1.03309 1.00011 1.20909 0.96475 0.96703 0.94426 0.90307 1.21863 0.94218 1.00812 1.03554 0.95229 0.95060 0.90649 0.94535 0.93714 0.92286 0.85427 0.92064 0.89373 0.91726 0.88246 0.89670 0.88518 0.89765 0.93332 0.93545 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.47 8.99 -45.44 -0.41 -7.88 16 3 C 0.05 0.96 6.28 37.16 0.23 1.20 16 4 C 0.11 2.61 5.43 -4.04 -0.02 2.58 16 5 N -0.44 -10.46 2.52 -114.81 -0.29 -10.75 16 6 C -0.33 -7.62 8.59 -14.93 -0.13 -7.74 16 7 H 0.09 1.92 6.37 -52.49 -0.33 1.58 16 8 C 0.04 0.94 5.24 -17.46 -0.09 0.85 16 9 N -0.87 -21.65 10.96 55.50 0.61 -21.05 16 10 Si 0.91 18.28 29.56 -169.99 -5.02 13.26 16 11 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 13 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 14 C 0.50 11.29 4.97 -10.98 -0.05 11.23 16 15 O -0.58 -14.73 14.35 -4.66 -0.07 -14.80 16 16 C -0.09 -1.73 1.46 -91.81 -0.13 -1.86 16 17 H 0.09 1.69 6.13 -51.93 -0.32 1.37 16 18 C -0.10 -1.64 5.20 -26.64 -0.14 -1.78 16 19 C -0.17 -2.39 6.17 -27.49 -0.17 -2.55 16 20 C 0.37 5.60 6.72 -28.48 -0.19 5.41 16 21 O -0.47 -8.48 17.89 6.00 0.11 -8.37 16 22 C -0.16 -2.27 5.45 -27.49 -0.15 -2.42 16 23 C -0.07 -1.09 1.95 -90.53 -0.18 -1.26 16 24 H 0.08 1.43 7.98 -51.93 -0.41 1.01 16 25 C -0.15 -2.38 8.96 37.15 0.33 -2.04 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 32 H 0.13 3.09 5.31 -51.92 -0.28 2.81 16 33 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 34 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.60 6.10 -51.93 -0.32 1.28 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -28.56 336.51 -6.26 -34.82 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.68 Total: 6.51 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 0.42 Total: 3.20 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.32 Total: -31.80 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.37 Total: -31.05 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.56 -6.26 -34.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160822829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.313 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds