Wall clock time and date at job start Tue Mar 31 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00292 * 2 1 4 4 C 1.52998 * 109.47157 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47455 * 65.00027 * 4 3 2 6 6 C 1.37093 * 120.00372 * 93.31123 * 5 4 3 7 7 H 1.08002 * 120.00230 * 221.74143 * 6 5 4 8 8 C 1.38953 * 120.00125 * 42.01004 * 6 5 4 9 9 N 1.31415 * 119.99751 * 6.35748 * 8 6 5 10 10 Si 1.86800 * 120.00238 * 186.35497 * 8 6 5 11 11 H 1.48499 * 109.46957 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47083 * 120.00272 * 10 8 6 13 13 H 1.48496 * 109.47053 * 240.00392 * 10 8 6 14 14 C 1.34781 * 119.99544 * 273.31050 * 5 4 3 15 15 O 1.21286 * 120.00153 * 355.20323 * 14 5 4 16 16 C 1.50702 * 119.99688 * 175.20285 * 14 5 4 17 17 H 1.09002 * 109.41542 * 335.25353 * 16 14 5 18 18 C 1.52954 * 109.41620 * 95.11358 * 16 14 5 19 19 C 1.53218 * 109.40961 * 183.70082 * 18 16 14 20 20 C 1.51274 * 108.53926 * 305.37936 * 19 18 16 21 21 O 1.20762 * 120.84865 * 231.36495 * 20 19 18 22 22 C 1.51264 * 118.29967 * 51.33877 * 20 19 18 23 23 C 1.52962 * 109.41044 * 215.47032 * 16 14 5 24 24 H 1.09001 * 109.48187 * 296.26819 * 23 16 14 25 25 C 1.52991 * 109.48487 * 56.31708 * 23 16 14 26 26 H 1.09002 * 109.47011 * 300.00284 * 1 2 3 27 27 H 1.08996 * 109.47021 * 60.00231 * 1 2 3 28 28 H 1.09001 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47156 * 59.99845 * 3 2 1 30 30 H 1.09002 * 109.46244 * 299.99910 * 3 2 1 31 31 H 1.09001 * 109.47239 * 304.99333 * 4 3 2 32 32 H 1.09008 * 109.46999 * 184.99666 * 4 3 2 33 33 H 0.97001 * 119.99774 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.48257 * 303.68788 * 18 16 14 35 35 H 1.09006 * 109.47829 * 63.71890 * 18 16 14 36 36 H 1.09004 * 109.62401 * 65.08712 * 19 18 16 37 37 H 1.08995 * 109.63047 * 185.46827 * 19 18 16 38 38 H 1.09002 * 109.62549 * 68.37683 * 22 20 19 39 39 H 1.09000 * 109.62570 * 188.93637 * 22 20 19 40 40 H 1.09002 * 109.47398 * 64.40769 * 25 23 16 41 41 H 1.09003 * 109.47158 * 184.40444 * 25 23 16 42 42 H 1.09001 * 109.47398 * 304.40651 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3316 1.3495 -2.3187 7 1 4.0207 1.0784 -3.3168 8 6 5.0971 2.4913 -2.1156 9 7 5.5850 2.7518 -0.9235 10 14 5.4329 3.6558 -3.5371 11 1 4.7760 3.1402 -4.7651 12 1 4.8916 5.0003 -3.2140 13 1 6.8975 3.7527 -3.7622 14 6 4.0309 -0.7783 -1.3566 15 8 3.8003 -1.4715 -0.3884 16 6 4.3791 -1.4183 -2.6758 17 1 4.1262 -0.7360 -3.4874 18 6 5.8779 -1.7207 -2.7143 19 6 6.2482 -2.2859 -4.0895 20 6 5.3638 -3.4801 -4.3726 21 8 5.8399 -4.5363 -4.7135 22 6 3.8680 -3.3176 -4.2173 23 6 3.5840 -2.7150 -2.8373 24 1 3.8816 -3.4227 -2.0635 25 6 2.0891 -2.4164 -2.7087 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8515 0.5682 0.8410 32 1 3.9786 2.1765 0.0889 33 1 6.1196 3.5487 -0.7818 34 1 6.4386 -0.8033 -2.5353 35 1 6.1212 -2.4518 -1.9432 36 1 6.0901 -1.5242 -4.8530 37 1 7.2940 -2.5930 -4.0897 38 1 3.4896 -2.6514 -4.9926 39 1 3.3836 -4.2907 -4.2986 40 1 1.7755 -1.7712 -3.5294 41 1 1.5276 -3.3499 -2.7456 42 1 1.8989 -1.9153 -1.7596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160822829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:31 Heat of formation + Delta-G solvation = -147.267994 kcal Electronic energy + Delta-G solvation = -24258.812784 eV Core-core repulsion = 20817.040893 eV Total energy + Delta-G solvation = -3441.771891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38204 -40.16050 -38.59071 -37.30967 -36.39475 -33.50064 -33.31579 -31.33925 -29.75579 -27.81945 -27.11816 -26.54330 -24.24563 -23.18832 -21.94124 -20.77618 -20.16223 -18.61925 -17.79727 -17.13981 -16.95745 -16.62238 -16.49437 -16.05625 -16.00590 -15.85186 -15.64343 -15.19738 -14.86125 -14.47083 -13.99730 -13.65688 -13.50957 -13.16890 -13.11891 -13.02683 -12.90209 -12.81624 -12.76172 -12.55860 -12.33905 -12.21226 -11.92252 -11.85193 -11.78915 -11.60872 -11.31505 -10.91078 -10.47744 -10.35877 -10.02336 -9.26050 -8.13831 -6.02078 0.95084 1.49337 1.54998 1.65380 2.25086 2.40501 3.01912 3.07935 3.19300 3.27286 3.74772 3.81551 4.02374 4.14109 4.32806 4.33944 4.42180 4.46229 4.47773 4.55074 4.57789 4.61717 4.68485 4.78276 4.81201 4.84644 4.89870 4.94354 5.04360 5.06211 5.14850 5.23070 5.34499 5.41509 5.48259 5.54532 5.65852 6.23606 6.43967 6.49746 6.58984 7.26858 7.78360 8.24842 8.86784 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.008150 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.535191 B = 3434.595531 C = 5007.910454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.060 3.940 4 C 0.112 3.888 5 N -0.455 5.455 6 C -0.334 4.334 7 H 0.101 0.899 8 C -0.001 4.001 9 N -0.907 5.907 10 Si 0.980 3.020 11 H -0.251 1.251 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.488 3.512 15 O -0.617 6.617 16 C -0.088 4.088 17 H 0.103 0.897 18 C -0.089 4.089 19 C -0.158 4.158 20 C 0.370 3.630 21 O -0.500 6.500 22 C -0.153 4.153 23 C -0.060 4.060 24 H 0.055 0.945 25 C -0.141 4.141 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.115 0.885 33 H 0.268 0.732 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.949 -2.064 -6.721 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.018 4.018 4 C -0.012 4.012 5 N -0.174 5.174 6 C -0.462 4.462 7 H 0.118 0.882 8 C -0.202 4.202 9 N -0.546 5.546 10 Si 0.804 3.196 11 H -0.174 1.174 12 H -0.211 1.211 13 H -0.211 1.211 14 C 0.277 3.723 15 O -0.503 6.503 16 C -0.109 4.109 17 H 0.121 0.879 18 C -0.128 4.128 19 C -0.195 4.195 20 C 0.249 3.751 21 O -0.376 6.376 22 C -0.191 4.191 23 C -0.080 4.080 24 H 0.073 0.927 25 C -0.198 4.198 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.144 0.856 37 H 0.112 0.888 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.604 -2.951 -6.320 8.947 hybrid contribution 0.169 1.175 0.155 1.198 sum -5.435 -1.775 -6.165 8.408 Atomic orbital electron populations 1.22830 0.81008 1.02899 1.00222 1.88116 1.20167 1.28056 1.95296 1.22938 0.94699 0.84598 0.99550 1.21510 0.91255 1.01171 0.87266 1.43497 1.57719 1.03933 1.12259 1.19782 1.31020 1.06790 0.88598 0.88184 1.26217 0.94484 1.00289 0.99166 1.69812 1.33861 1.27607 1.23353 0.85054 0.77735 0.77780 0.79004 1.17449 1.21129 1.21098 1.20805 0.78497 0.82724 0.90238 1.90508 1.55233 1.63356 1.41201 1.21204 0.96066 0.97140 0.96464 0.87877 1.21196 0.94634 1.00881 0.96058 1.22278 1.00514 0.98022 0.98736 1.25247 0.93295 0.87774 0.68752 1.90365 1.79220 1.31010 1.37053 1.22373 0.93509 1.04470 0.98736 1.20813 0.96461 0.95108 0.95585 0.92664 1.21780 0.94099 1.01812 1.02155 0.93449 0.93825 0.89421 0.92472 0.93638 0.95302 0.86756 0.92162 0.91126 0.93348 0.85629 0.88800 0.85540 0.88452 0.91669 0.91485 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -16.19 8.99 -139.22 -1.25 -17.44 16 3 C 0.06 2.39 6.28 71.98 0.45 2.85 16 4 C 0.11 5.36 5.43 86.38 0.47 5.82 16 5 N -0.46 -21.77 2.52 -635.53 -1.60 -23.36 16 6 C -0.33 -15.35 8.59 84.04 0.72 -14.63 16 7 H 0.10 4.24 6.37 -2.91 -0.02 4.22 16 8 C 0.00 -0.03 5.24 84.93 0.44 0.41 16 9 N -0.91 -45.72 10.96 21.66 0.24 -45.48 16 10 Si 0.98 36.51 29.56 68.60 2.03 38.54 16 11 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 12 H -0.29 -10.76 7.11 99.48 0.71 -10.05 16 13 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 14 C 0.49 22.55 4.97 87.66 0.44 22.99 16 15 O -0.62 -32.42 14.35 6.72 0.10 -32.33 16 16 C -0.09 -3.17 1.46 -11.57 -0.02 -3.18 16 17 H 0.10 3.50 6.13 -2.39 -0.01 3.48 16 18 C -0.09 -3.03 5.20 30.65 0.16 -2.88 16 19 C -0.16 -4.16 6.17 30.10 0.19 -3.97 16 20 C 0.37 10.41 6.72 29.46 0.20 10.61 16 21 O -0.50 -16.93 17.89 -1.45 -0.03 -16.96 16 22 C -0.15 -3.75 5.45 30.10 0.16 -3.59 16 23 C -0.06 -1.91 1.95 -10.73 -0.02 -1.93 16 24 H 0.05 2.00 7.98 -2.39 -0.02 1.98 16 25 C -0.14 -4.31 8.96 71.98 0.64 -3.66 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.03 1.50 7.46 -2.39 -0.02 1.48 16 32 H 0.12 5.75 5.31 -2.38 -0.01 5.74 16 33 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 34 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.75 6.10 -2.39 -0.01 1.74 16 Total: -1.00 -63.21 336.51 5.57 -57.64 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 1.00 Total: 28.51 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.09 Total: 10.88 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -1.36 Total: -68.85 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: -1.18 Total: -66.72 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Total: -63.21 5.57 -57.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160822829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.629 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds