Wall clock time and date at job start Tue Mar 31 2020 06:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99850 * 2 1 4 4 C 1.53005 * 109.46687 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47165 * 65.00330 * 4 3 2 6 6 C 1.37100 * 119.99962 * 269.99789 * 5 4 3 7 7 H 1.07999 * 119.99426 * 49.20302 * 6 5 4 8 8 C 1.38944 * 119.99980 * 229.20465 * 6 5 4 9 9 N 1.31405 * 120.00203 * 203.78369 * 8 6 5 10 10 Si 1.86807 * 120.00079 * 23.78131 * 8 6 5 11 11 H 1.48503 * 109.46896 * 93.19297 * 10 8 6 12 12 H 1.48498 * 109.47062 * 213.19632 * 10 8 6 13 13 H 1.48498 * 109.46852 * 333.19482 * 10 8 6 14 14 C 1.34775 * 119.99976 * 89.99869 * 5 4 3 15 15 O 1.21296 * 119.99776 * 3.62949 * 14 5 4 16 16 C 1.50696 * 120.00011 * 183.63135 * 14 5 4 17 17 H 1.08996 * 109.41492 * 307.01547 * 16 14 5 18 18 C 1.52965 * 109.41069 * 66.87250 * 16 14 5 19 19 C 1.53234 * 109.40243 * 183.70095 * 18 16 14 20 20 C 1.51269 * 108.53778 * 305.37492 * 19 18 16 21 21 O 1.20757 * 120.84844 * 231.36832 * 20 19 18 22 22 C 1.51262 * 118.30152 * 51.34439 * 20 19 18 23 23 C 1.52955 * 109.41415 * 187.22116 * 16 14 5 24 24 H 1.09007 * 109.48288 * 56.32031 * 23 16 14 25 25 C 1.53003 * 109.48645 * 296.27680 * 23 16 14 26 26 H 1.09001 * 109.47460 * 59.99169 * 1 2 3 27 27 H 1.08997 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46742 * 299.99213 * 1 2 3 29 29 H 1.09001 * 109.47076 * 60.00687 * 3 2 1 30 30 H 1.08999 * 109.47638 * 300.00323 * 3 2 1 31 31 H 1.09004 * 109.47271 * 305.00086 * 4 3 2 32 32 H 1.09000 * 109.46366 * 185.00319 * 4 3 2 33 33 H 0.96997 * 120.00684 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.48369 * 63.72828 * 18 16 14 35 35 H 1.08998 * 109.48377 * 303.68008 * 18 16 14 36 36 H 1.08995 * 109.62584 * 185.65562 * 19 18 16 37 37 H 1.09003 * 109.62081 * 65.08641 * 19 18 16 38 38 H 1.09004 * 109.62689 * 68.36810 * 22 20 19 39 39 H 1.08998 * 109.62695 * 188.93526 * 22 20 19 40 40 H 1.08991 * 109.47106 * 300.06953 * 25 23 16 41 41 H 1.09008 * 109.46569 * 60.06595 * 25 23 16 42 42 H 1.08997 * 109.47123 * 180.02562 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0969 -0.7986 -1.3371 7 1 3.2903 -1.4341 -1.0025 8 6 5.2574 -1.3623 -1.8529 9 7 5.2279 -2.5706 -2.3686 10 14 6.8595 -0.4025 -1.8134 11 1 7.6147 -0.7503 -0.5830 12 1 7.6725 -0.7471 -3.0074 13 1 6.5648 1.0530 -1.8185 14 6 4.2615 1.3338 -2.3218 15 8 4.2180 2.5423 -2.2282 16 6 4.6351 0.6925 -3.6334 17 1 5.4528 -0.0102 -3.4732 18 6 3.4252 -0.0550 -4.1966 19 6 3.8303 -0.7832 -5.4826 20 6 4.4394 0.2231 -6.4336 21 8 4.0497 0.3129 -7.5731 22 6 5.5488 1.1143 -5.9208 23 6 5.0815 1.7737 -4.6190 24 1 5.9028 2.3443 -4.1853 25 6 3.9087 2.7109 -4.9142 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.6887 1.8464 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.8515 0.5681 0.8409 32 1 3.9785 2.1765 0.0890 33 1 6.0381 -2.9643 -2.7284 34 1 2.6289 0.6559 -4.4169 35 1 3.0727 -0.7806 -3.4636 36 1 2.9500 -1.2339 -5.9408 37 1 4.5621 -1.5569 -5.2501 38 1 6.4398 0.5163 -5.7289 39 1 5.7727 1.8827 -6.6606 40 1 3.0875 2.1399 -5.3473 41 1 3.5764 3.1798 -3.9880 42 1 4.2269 3.4809 -5.6169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160822830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:34 Heat of formation + Delta-G solvation = -112.514981 kcal Electronic energy + Delta-G solvation = -24753.983019 eV Core-core repulsion = 21313.718131 eV Total energy + Delta-G solvation = -3440.264887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24991 -38.79891 -37.32679 -35.89538 -34.82290 -32.29544 -31.42506 -29.81676 -28.47311 -26.76573 -25.92147 -24.43751 -22.70189 -22.36367 -20.80652 -19.44197 -17.94074 -17.36885 -16.11434 -16.02133 -15.63950 -15.22268 -14.94542 -14.83530 -14.54628 -14.28168 -14.12926 -13.68494 -13.41135 -13.14328 -12.76790 -12.72645 -12.36541 -11.91376 -11.73346 -11.57291 -11.41941 -11.35443 -11.19661 -11.01126 -10.81414 -10.75471 -10.59016 -10.46152 -10.16723 -10.11265 -9.61003 -9.21311 -9.00446 -8.89655 -8.46554 -7.59655 -6.52142 -4.16614 2.31945 3.03426 3.16184 3.26093 3.68679 4.05000 4.27099 4.39120 4.54302 4.86893 5.08746 5.22727 5.36122 5.51292 5.53189 5.59797 5.65119 5.74077 5.80214 5.80906 5.87230 5.91843 5.94712 6.02491 6.06091 6.14697 6.18523 6.32106 6.36068 6.44107 6.52888 6.53948 6.68138 6.74897 6.96647 7.16835 7.62133 7.66949 7.76807 7.84435 8.58096 8.95512 9.29101 9.70163 10.56234 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.008149 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.234308 B = 3435.267686 C = 3929.822303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.054 3.946 4 C 0.108 3.892 5 N -0.462 5.462 6 C -0.336 4.336 7 H 0.110 0.890 8 C 0.078 3.922 9 N -0.848 5.848 10 Si 0.838 3.162 11 H -0.279 1.279 12 H -0.278 1.278 13 H -0.255 1.255 14 C 0.498 3.502 15 O -0.593 6.593 16 C -0.091 4.091 17 H 0.090 0.910 18 C -0.096 4.096 19 C -0.163 4.163 20 C 0.368 3.632 21 O -0.476 6.476 22 C -0.169 4.169 23 C -0.068 4.068 24 H 0.078 0.922 25 C -0.157 4.157 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.274 0.726 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 4.164 0.041 5.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.024 4.024 4 C -0.015 4.015 5 N -0.183 5.183 6 C -0.463 4.463 7 H 0.127 0.873 8 C -0.129 4.129 9 N -0.483 5.483 10 Si 0.663 3.337 11 H -0.205 1.205 12 H -0.203 1.203 13 H -0.179 1.179 14 C 0.288 3.712 15 O -0.479 6.479 16 C -0.112 4.112 17 H 0.108 0.892 18 C -0.134 4.134 19 C -0.201 4.201 20 C 0.245 3.755 21 O -0.351 6.351 22 C -0.207 4.207 23 C -0.087 4.087 24 H 0.097 0.903 25 C -0.214 4.214 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.035 4.450 -0.570 5.416 hybrid contribution 0.978 0.399 0.200 1.075 sum -2.057 4.849 -0.370 5.280 Atomic orbital electron populations 1.22655 0.82753 1.02100 0.98958 1.88089 1.18021 1.27434 1.95106 1.22945 0.95490 0.84748 0.99171 1.21515 0.91410 0.99111 0.89486 1.43627 1.60254 1.07050 1.07334 1.19032 1.02551 0.79420 1.45340 0.87275 1.25523 0.97510 0.95110 0.94785 1.69766 1.29149 1.15478 1.33860 0.87445 0.85171 0.82649 0.78432 1.20544 1.20329 1.17908 1.20314 0.79021 0.86438 0.85418 1.90449 1.58045 1.14656 1.84708 1.21205 1.00171 0.96862 0.92934 0.89236 1.21420 0.96213 0.99887 0.95836 1.22280 1.02577 0.98571 0.96672 1.25046 0.81393 0.81788 0.87271 1.90334 1.58328 1.65542 1.20865 1.22432 0.98828 0.99983 0.99421 1.20909 0.99297 0.95994 0.92524 0.90324 1.22134 0.97304 0.98702 1.03246 0.94748 0.90112 0.95082 0.93964 0.93570 0.90276 0.90236 0.91515 0.92442 0.86758 0.89770 0.87732 0.88830 0.89619 0.93488 0.89001 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.78 9.72 -35.23 -0.34 -7.12 16 3 C 0.05 0.94 6.28 37.16 0.23 1.17 16 4 C 0.11 2.11 5.83 -4.04 -0.02 2.08 16 5 N -0.46 -10.30 1.97 -114.81 -0.23 -10.52 16 6 C -0.34 -8.04 7.12 -14.93 -0.11 -8.15 16 7 H 0.11 2.87 7.46 -52.49 -0.39 2.48 16 8 C 0.08 1.88 3.84 -17.47 -0.07 1.81 16 9 N -0.85 -20.98 13.96 55.50 0.77 -20.21 16 10 Si 0.84 19.00 24.86 -169.99 -4.23 14.78 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.25 -5.96 5.73 56.52 0.32 -5.64 16 14 C 0.50 11.10 4.48 -10.99 -0.05 11.05 16 15 O -0.59 -13.82 13.22 5.54 0.07 -13.75 16 16 C -0.09 -1.85 0.87 -91.81 -0.08 -1.93 16 17 H 0.09 1.94 2.94 -51.93 -0.15 1.78 16 18 C -0.10 -1.84 4.69 -26.63 -0.12 -1.96 16 19 C -0.16 -2.85 6.17 -27.48 -0.17 -3.02 16 20 C 0.37 6.45 5.75 -28.48 -0.16 6.29 16 21 O -0.48 -9.30 17.89 6.00 0.11 -9.19 16 22 C -0.17 -2.74 5.65 -27.49 -0.16 -2.89 16 23 C -0.07 -1.24 2.35 -90.52 -0.21 -1.45 16 24 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 25 C -0.16 -2.75 8.31 37.16 0.31 -2.44 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 32 H 0.08 1.51 7.37 -51.93 -0.38 1.12 16 33 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 34 H 0.06 1.06 6.19 -51.93 -0.32 0.74 16 35 H 0.11 2.45 6.13 -51.93 -0.32 2.14 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 38 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.05 0.81 5.60 -51.93 -0.29 0.52 16 41 H 0.09 1.78 5.58 -51.92 -0.29 1.49 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -27.35 321.06 -4.92 -32.27 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.43 Total: 6.76 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 0.50 Total: 2.13 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.55 Total: -30.73 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.16 Total: -30.06 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.23 Total: 14.78 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.35 -4.92 -32.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160822830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.242 kcal (2) G-P(sol) polarization free energy of solvation -27.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds