Wall clock time and date at job start Tue Mar 31 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 116.99841 * 2 1 4 4 O 1.20828 * 120.00266 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99734 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47247 * 299.99723 * 5 3 2 7 7 N 1.46906 * 109.47140 * 179.97438 * 5 3 2 8 8 C 1.46902 * 110.99927 * 154.99767 * 7 5 3 9 9 C 1.52999 * 109.47515 * 275.00362 * 8 7 5 10 10 C 1.52991 * 109.47162 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47359 * 60.00065 * 10 9 8 12 12 C 1.50707 * 109.47438 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99959 * 119.99465 * 12 11 10 14 14 C 1.37877 * 119.99534 * 299.99993 * 12 11 10 15 15 N 1.31521 * 120.00210 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99971 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46932 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47274 * 119.99462 * 16 14 12 19 19 H 1.48500 * 109.46716 * 239.99678 * 16 14 12 20 20 C 1.53000 * 109.46982 * 299.99685 * 11 10 9 21 21 C 1.53002 * 109.46811 * 155.00123 * 8 7 5 22 22 C 1.50701 * 109.47269 * 59.99888 * 5 3 2 23 23 C 1.50698 * 120.00140 * 284.99951 * 22 5 3 24 24 O 1.20765 * 120.00238 * 105.00005 * 22 5 3 25 25 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47388 * 300.00646 * 1 2 3 27 27 H 1.09000 * 109.47349 * 59.99888 * 1 2 3 28 28 H 1.00895 * 110.99792 * 278.95436 * 7 5 3 29 29 H 1.09009 * 109.47066 * 35.00229 * 8 7 5 30 30 H 1.09007 * 109.46333 * 300.00015 * 9 8 7 31 31 H 1.09003 * 109.47111 * 59.99499 * 9 8 7 32 32 H 1.09003 * 109.47396 * 299.99954 * 10 9 8 33 33 H 1.08998 * 109.47080 * 179.97438 * 10 9 8 34 34 H 1.08993 * 109.47437 * 59.99397 * 11 10 9 35 35 H 0.96999 * 119.99873 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.47226 * 300.00555 * 20 11 10 37 37 H 1.09005 * 109.47626 * 179.97438 * 20 11 10 38 38 H 1.08999 * 109.47262 * 299.99683 * 21 8 7 39 39 H 1.08995 * 109.47052 * 60.00309 * 21 8 7 40 40 H 1.09004 * 109.47264 * 89.99360 * 23 22 5 41 41 H 1.08993 * 109.47531 * 210.00153 * 23 22 5 42 42 H 1.09003 * 109.46807 * 329.99968 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9556 0.7810 0.8908 7 7 3.9828 2.6836 -0.0002 8 6 5.3238 2.8364 0.5800 9 6 5.2123 2.9383 2.1025 10 6 6.6088 3.0980 2.7065 11 6 7.2601 4.3686 2.1567 12 6 8.6360 4.5256 2.7512 13 1 9.5027 4.5504 2.1075 14 6 8.7880 4.6376 4.1170 15 7 7.7324 4.6078 4.9009 16 14 10.4934 4.8330 4.8540 17 1 11.5049 4.8374 3.7668 18 1 10.5654 6.1133 5.6028 19 1 10.7655 3.7029 5.7782 20 6 7.3716 4.2667 0.6342 21 6 5.9755 4.1067 0.0301 22 6 4.1056 0.5914 -1.2295 23 6 4.1171 -0.9133 -1.3116 24 8 4.5286 1.2495 -2.1495 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.9451 3.0713 -0.9309 29 1 5.9339 1.9720 0.3174 30 1 4.6022 3.8026 2.3650 31 1 4.7478 2.0333 2.4942 32 1 7.2193 2.2340 2.4439 33 1 6.5293 3.1710 3.7911 34 1 6.6497 5.2326 2.4192 35 1 7.8394 4.6870 5.8617 36 1 7.9820 3.4026 0.3716 37 1 7.8352 5.1721 0.2423 38 1 6.0551 4.0341 -1.0545 39 1 5.3655 4.9710 0.2927 40 1 3.1820 -1.2604 -1.7513 41 1 4.9526 -1.2369 -1.9322 42 1 4.2249 -1.3309 -0.3106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:31 Heat of formation + Delta-G solvation = -132.595966 kcal Electronic energy + Delta-G solvation = -23143.258070 eV Core-core repulsion = 19702.122406 eV Total energy + Delta-G solvation = -3441.135664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.00924 -39.62826 -37.96019 -36.63887 -34.74991 -32.52871 -31.09727 -29.76893 -29.21223 -28.06415 -26.13871 -23.97568 -22.02764 -21.75735 -20.65212 -19.84235 -18.79504 -17.78203 -17.22380 -16.86185 -16.30443 -16.00713 -15.56758 -14.91619 -14.72678 -14.46726 -13.98930 -13.78462 -13.46340 -13.07841 -12.87362 -12.82347 -12.54020 -12.45578 -12.23414 -12.04147 -11.63394 -11.28112 -11.03847 -11.01004 -10.81911 -10.66201 -10.60921 -10.37510 -10.25468 -10.14024 -9.80834 -9.33737 -8.89883 -8.66335 -8.36515 -8.26482 -5.94408 -4.00380 1.40396 2.04489 2.42065 3.31300 3.39585 3.43526 3.67443 4.12867 4.47091 4.58052 4.74055 4.81980 4.86544 4.95251 5.17838 5.18388 5.27439 5.33075 5.36884 5.50746 5.68808 5.83986 6.05857 6.13217 6.24474 6.35563 6.42348 6.53455 6.67535 6.78413 6.88671 7.02344 7.11334 7.18776 7.32223 7.37835 7.55410 7.60663 7.79417 8.06611 8.19827 8.51282 9.04123 9.64146 11.11132 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027148 B = 0.003800 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.137718 B = 7367.593787 C = 7695.210410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.469 6.469 5 C 0.048 3.952 6 H 0.146 0.854 7 N -0.655 5.655 8 C 0.094 3.906 9 C -0.104 4.104 10 C -0.109 4.109 11 C 0.047 3.953 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.105 4.105 21 C -0.115 4.115 22 C 0.336 3.664 23 C -0.199 4.199 24 O -0.439 6.439 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.355 0.645 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.094 0.906 34 H 0.027 0.973 35 H 0.258 0.742 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 -12.769 -9.921 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.353 6.353 5 C -0.066 4.066 6 H 0.164 0.836 7 N -0.288 5.288 8 C -0.014 4.014 9 C -0.143 4.143 10 C -0.147 4.147 11 C 0.029 3.971 12 C -0.550 4.550 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.143 4.143 21 C -0.153 4.153 22 C 0.208 3.792 23 C -0.257 4.257 24 O -0.311 6.311 25 H 0.120 0.880 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.177 0.823 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.523 -11.905 -9.655 19.793 hybrid contribution 1.155 -0.307 -0.075 1.198 sum -11.367 -12.211 -9.730 19.313 Atomic orbital electron populations 1.23277 0.76031 1.03697 1.02755 1.86480 1.23605 1.33240 1.84600 1.23007 0.90545 0.81728 0.73657 1.90696 1.65870 1.36154 1.42550 1.21750 0.89822 0.94094 1.00924 0.83646 1.60367 1.29207 1.10356 1.28912 1.21727 0.85122 0.97923 0.96632 1.21684 1.00146 1.00533 0.91902 1.21629 0.91265 0.98463 1.03380 1.18673 0.95882 0.94147 0.88397 1.21276 0.92774 1.49248 0.91691 0.92799 1.24968 0.96411 0.95309 0.97336 1.69889 1.28287 1.50818 1.03910 0.86605 0.85008 0.77609 0.79176 1.19883 1.21111 1.21132 1.21590 0.93194 1.00109 0.99401 1.21694 0.98512 0.96855 0.98269 1.25384 0.74033 0.93020 0.86728 1.22274 1.05011 0.93024 1.05391 1.90442 1.35115 1.68482 1.37020 0.87964 0.91629 0.91969 0.82349 0.94234 0.91809 0.94353 0.95029 0.88771 0.95495 0.93172 0.93542 0.93131 0.93456 0.91477 0.88017 0.89370 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.58 10.06 -39.26 -0.39 -3.97 16 3 C 0.47 6.07 7.31 36.01 0.26 6.33 16 4 O -0.47 -7.56 16.18 -18.75 -0.30 -7.86 16 5 C 0.05 0.60 2.64 -70.01 -0.19 0.42 16 6 H 0.15 1.61 7.11 -51.93 -0.37 1.24 16 7 N -0.66 -10.21 5.46 -102.17 -0.56 -10.76 16 8 C 0.09 1.60 2.30 -67.71 -0.16 1.45 16 9 C -0.10 -2.01 5.41 -26.74 -0.14 -2.15 16 10 C -0.11 -2.50 4.98 -26.74 -0.13 -2.64 16 11 C 0.05 1.17 2.10 -91.77 -0.19 0.98 16 12 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 16 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.10 -2.19 5.14 -26.75 -0.14 -2.33 16 21 C -0.12 -2.09 5.19 -26.75 -0.14 -2.23 16 22 C 0.34 3.92 6.17 -29.04 -0.18 3.74 16 23 C -0.20 -1.52 9.79 36.00 0.35 -1.17 16 24 O -0.44 -6.49 16.49 5.99 0.10 -6.39 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.35 5.62 7.20 -39.29 -0.28 5.34 16 29 H 0.04 0.67 7.64 -51.92 -0.40 0.27 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.04 0.66 7.43 -51.93 -0.39 0.28 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.55 8.12 -51.93 -0.42 0.12 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -31.44 343.11 -7.14 -38.58 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.78 Total: 2.67 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 0.03 Total: -8.99 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.07 Total: -35.44 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.60 Total: -18.23 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.44 -7.14 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.016 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds