Wall clock time and date at job start Tue Mar 31 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47187 * 2 1 4 4 C 1.34223 * 117.00126 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99949 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00186 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46533 * 59.99942 * 6 4 3 8 8 C 1.52991 * 109.46983 * 300.00120 * 6 4 3 9 9 C 1.53002 * 109.47047 * 179.97438 * 8 6 4 10 10 C 1.53007 * 109.46878 * 60.00099 * 9 8 6 11 11 C 1.53000 * 109.46709 * 300.00058 * 10 9 8 12 12 H 1.09003 * 109.47314 * 299.99569 * 11 10 9 13 13 C 1.50704 * 109.46979 * 180.02562 * 11 10 9 14 14 O 1.21284 * 120.00029 * 246.35589 * 13 11 10 15 15 N 1.34783 * 120.00044 * 66.35096 * 13 11 10 16 16 C 1.46500 * 120.00201 * 183.31111 * 15 13 11 17 17 C 1.37101 * 119.99999 * 3.32032 * 15 13 11 18 18 H 1.08003 * 119.99502 * 8.00047 * 17 15 13 19 19 C 1.38939 * 120.00110 * 188.00581 * 17 15 13 20 20 N 1.31420 * 120.00153 * 7.19665 * 19 17 15 21 21 Si 1.86801 * 120.00185 * 187.19602 * 19 17 15 22 22 H 1.48506 * 109.46929 * 89.99926 * 21 19 17 23 23 H 1.48500 * 109.47468 * 209.99958 * 21 19 17 24 24 H 1.48503 * 109.47057 * 330.00139 * 21 19 17 25 25 C 1.52993 * 109.47495 * 60.00162 * 11 10 9 26 26 H 1.08994 * 109.47332 * 299.99967 * 1 2 3 27 27 H 1.08998 * 109.47390 * 60.00563 * 1 2 3 28 28 H 1.09008 * 109.47376 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47203 * 239.99614 * 2 1 3 30 30 H 1.09001 * 109.47320 * 119.99965 * 2 1 3 31 31 H 1.09000 * 109.47341 * 299.99327 * 8 6 4 32 32 H 1.09005 * 109.47703 * 59.99675 * 8 6 4 33 33 H 1.08997 * 109.47059 * 300.00457 * 9 8 6 34 34 H 1.09003 * 109.47551 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.46929 * 180.02562 * 10 9 8 36 36 H 1.08990 * 109.47138 * 59.99945 * 10 9 8 37 37 H 1.09004 * 109.46805 * 355.47454 * 16 15 13 38 38 H 1.08999 * 109.46460 * 115.46941 * 16 15 13 39 39 H 1.08992 * 109.47360 * 235.47226 * 16 15 13 40 40 H 0.96990 * 119.99900 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.47368 * 179.97438 * 25 11 10 42 42 H 1.09006 * 109.47056 * 59.99850 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5850 3.4697 0.8888 8 6 3.4487 3.6840 -1.2504 9 6 4.0330 5.0980 -1.2507 10 6 5.5610 5.0184 -1.2510 11 6 6.0329 4.2718 -0.0017 12 1 5.6970 4.8040 0.8883 13 6 7.5379 4.1939 -0.0015 14 8 8.0896 3.1200 -0.1178 15 7 8.2709 5.3176 0.1276 16 6 9.7326 5.2511 0.0550 17 6 7.6486 6.5228 0.3271 18 1 6.5847 6.5574 0.5098 19 6 8.3865 7.6996 0.2943 20 7 9.6499 7.6731 -0.0666 21 14 7.5829 9.3194 0.7630 22 1 7.7468 9.5496 2.2209 23 1 8.2264 10.4270 0.0116 24 1 6.1368 9.2694 0.4292 25 6 5.4486 2.8578 -0.0013 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7844 3.1516 -2.1403 32 1 2.3601 3.7410 -1.2501 33 1 3.6971 5.6301 -0.3607 34 1 3.6971 5.6298 -2.1409 35 1 5.9773 6.0257 -1.2507 36 1 5.8969 4.4863 -2.1408 37 1 10.0454 4.2100 -0.0255 38 1 10.0783 5.8030 -0.8190 39 1 10.1615 5.6908 0.9554 40 1 10.1651 8.4945 -0.0892 41 1 5.7852 2.3258 0.8884 42 1 5.7846 2.3256 -0.8913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183010733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:27 Heat of formation + Delta-G solvation = -152.726939 kcal Electronic energy + Delta-G solvation = -23218.756221 eV Core-core repulsion = 19776.747612 eV Total energy + Delta-G solvation = -3442.008609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.85368 -40.78489 -38.56211 -37.53500 -36.75835 -33.45455 -32.97274 -32.01524 -31.76671 -28.36751 -26.57114 -25.60562 -23.93977 -23.48003 -22.01239 -21.03656 -20.65264 -19.18012 -18.34659 -17.98046 -17.58449 -17.13273 -16.14014 -16.07428 -16.00046 -15.69917 -15.27132 -14.78902 -14.68124 -14.50785 -13.97275 -13.76153 -13.57056 -13.41238 -13.32602 -13.00213 -12.88491 -12.77863 -12.66222 -12.50313 -12.37026 -12.28746 -12.06858 -11.90933 -11.71675 -11.55414 -11.47457 -11.34831 -11.07962 -10.95074 -10.18669 -9.86849 -8.16456 -5.85836 1.14628 1.46831 1.51807 1.63259 1.64250 2.03866 2.32582 3.00357 3.20976 3.53209 3.75689 3.81801 4.01434 4.08101 4.10744 4.23709 4.28866 4.36420 4.42678 4.48790 4.51323 4.56510 4.72945 4.86473 4.93307 4.95043 5.08067 5.10643 5.12958 5.15666 5.22625 5.26787 5.35680 5.42483 5.42717 5.46065 5.55161 5.59548 5.81518 6.45519 6.72383 7.14785 7.61837 8.02040 8.78061 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026917 B = 0.004145 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.003477 B = 6754.126802 C = 7476.754824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.352 6.352 4 C 0.470 3.530 5 O -0.544 6.544 6 C -0.072 4.072 7 H 0.136 0.864 8 C -0.102 4.102 9 C -0.104 4.104 10 C -0.112 4.112 11 C -0.074 4.074 12 H 0.101 0.899 13 C 0.437 3.563 14 O -0.652 6.652 15 N -0.458 5.458 16 C 0.131 3.869 17 C -0.342 4.342 18 H 0.126 0.874 19 C -0.016 4.016 20 N -0.909 5.909 21 Si 0.995 3.005 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.245 1.245 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.040 0.960 40 H 0.267 0.733 41 H 0.047 0.953 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 -3.852 -0.473 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.269 6.269 4 C 0.314 3.686 5 O -0.434 6.434 6 C -0.091 4.091 7 H 0.154 0.846 8 C -0.140 4.140 9 C -0.142 4.142 10 C -0.150 4.150 11 C -0.095 4.095 12 H 0.118 0.882 13 C 0.228 3.772 14 O -0.542 6.542 15 N -0.175 5.175 16 C -0.013 4.013 17 C -0.469 4.469 18 H 0.143 0.857 19 C -0.216 4.216 20 N -0.549 5.549 21 Si 0.818 3.182 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.168 1.168 25 C -0.108 4.108 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.208 -4.512 -0.558 19.739 hybrid contribution 1.014 0.245 0.258 1.074 sum -18.194 -4.267 -0.301 18.690 Atomic orbital electron populations 1.21808 0.89914 1.04345 1.03948 1.23308 0.97395 0.79479 1.02271 1.86505 1.23399 1.33425 1.83556 1.24108 0.80719 0.92821 0.70916 1.90674 1.61415 1.44502 1.46806 1.21161 0.94355 0.89153 1.04401 0.84637 1.21550 1.02291 0.95735 0.94375 1.21516 0.92390 0.95923 1.04331 1.21574 0.97662 1.00955 0.94830 1.20914 0.90043 0.96821 1.01696 0.88152 1.20913 0.91085 0.83117 0.82107 1.90489 1.74540 1.30053 1.59122 1.43990 1.05889 1.07117 1.60481 1.21313 0.81189 0.96646 1.02121 1.20272 0.95859 0.82436 1.48314 0.85707 1.26291 0.96153 1.03143 0.95997 1.70297 1.09249 1.29094 1.46242 0.84877 0.79378 0.76083 0.77829 1.20381 1.21385 1.16777 1.21010 0.92465 0.95476 1.01852 0.91031 0.90966 0.88356 0.91738 0.91737 0.92420 0.87823 0.89563 0.89235 0.90357 0.93928 0.95466 0.91550 0.94086 0.92268 0.93437 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 10.29 71.98 0.74 -0.87 16 2 C 0.05 0.92 6.19 71.98 0.45 1.37 16 3 O -0.35 -8.13 10.12 -51.35 -0.52 -8.65 16 4 C 0.47 13.49 7.26 71.24 0.52 14.01 16 5 O -0.54 -20.01 15.73 21.96 0.35 -19.66 16 6 C -0.07 -1.88 2.63 -11.54 -0.03 -1.91 16 7 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 8 C -0.10 -2.19 5.13 30.59 0.16 -2.03 16 9 C -0.10 -2.31 5.92 30.60 0.18 -2.13 16 10 C -0.11 -3.70 4.87 30.60 0.15 -3.55 16 11 C -0.07 -2.81 1.68 -11.54 -0.02 -2.83 16 12 H 0.10 3.49 7.31 -2.39 -0.02 3.48 16 13 C 0.44 22.03 6.96 87.66 0.61 22.64 16 14 O -0.65 -37.42 15.32 -3.04 -0.05 -37.47 16 15 N -0.46 -23.93 3.03 -658.90 -1.99 -25.93 16 16 C 0.13 6.99 8.88 127.77 1.14 8.13 16 17 C -0.34 -16.62 7.92 84.04 0.67 -15.95 16 18 H 0.13 5.37 5.39 -2.91 -0.02 5.35 16 19 C -0.02 -0.76 5.39 84.92 0.46 -0.30 16 20 N -0.91 -47.54 9.65 21.66 0.21 -47.33 16 21 Si 1.00 37.53 29.56 68.60 2.03 39.56 16 22 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.29 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 25 C -0.07 -2.54 3.09 30.59 0.09 -2.45 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 0.72 8.14 -2.38 -0.02 0.71 16 29 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 30 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.66 8.11 -2.38 -0.02 1.64 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 2.85 5.84 -2.39 -0.01 2.83 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.03 1.45 6.91 -2.39 -0.02 1.43 16 38 H 0.07 3.66 6.65 -2.39 -0.02 3.64 16 39 H 0.04 2.20 7.51 -2.39 -0.02 2.19 16 40 H 0.27 13.26 8.31 -92.72 -0.77 12.49 16 41 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 42 H 0.05 1.94 7.99 -2.38 -0.02 1.92 16 Total: -1.00 -68.66 334.48 6.13 -62.53 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.00 Total: 22.82 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 5.10 Total: 14.13 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.78 Total: -73.26 kcal Atomic # 8 Polarization: -65.56 SS G_CDS: -0.22 Total: -65.78 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -68.66 6.13 -62.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183010733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.195 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds