Wall clock time and date at job start Tue Mar 31 2020 05:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.46944 * 2 1 4 4 C 1.34230 * 117.00167 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99982 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00271 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.70997 * 60.58320 * 6 4 3 8 8 C 1.53300 * 109.71233 * 181.20841 * 6 4 3 9 9 N 1.46822 * 109.40422 * 173.47903 * 8 6 4 10 10 C 1.46893 * 111.00358 * 170.24935 * 9 8 6 11 11 H 1.08994 * 109.47623 * 310.73377 * 10 9 8 12 12 C 1.50708 * 109.47161 * 70.73188 * 10 9 8 13 13 H 1.07991 * 119.99789 * 0.02562 * 12 10 9 14 14 C 1.37877 * 120.00008 * 179.97438 * 12 10 9 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.53003 * 109.47225 * 190.72972 * 10 9 8 21 21 C 1.53000 * 109.46689 * 65.00393 * 20 10 9 22 22 C 1.46838 * 111.56499 * 294.61821 * 9 8 6 23 23 C 1.53300 * 109.39908 * 65.38275 * 22 9 8 24 24 C 1.51431 * 108.24268 * 306.20704 * 23 22 9 25 25 O 1.20762 * 121.11226 * 229.04723 * 24 23 22 26 26 H 1.09000 * 109.47265 * 299.99661 * 1 2 3 27 27 H 1.09000 * 109.47169 * 60.00250 * 1 2 3 28 28 H 1.09002 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47265 * 240.00339 * 2 1 3 30 30 H 1.08993 * 109.47284 * 120.00123 * 2 1 3 31 31 H 1.09006 * 109.47787 * 53.50337 * 8 6 4 32 32 H 1.08995 * 109.48450 * 293.46193 * 8 6 4 33 33 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 34 34 H 1.09006 * 109.47156 * 184.99920 * 20 10 9 35 35 H 1.08992 * 109.47487 * 305.00086 * 20 10 9 36 36 H 1.09008 * 109.47103 * 180.02562 * 21 20 10 37 37 H 1.09004 * 109.47061 * 299.99136 * 21 20 10 38 38 H 1.08999 * 109.47767 * 59.99763 * 21 20 10 39 39 H 1.09000 * 109.48055 * 185.36030 * 22 9 8 40 40 H 1.09005 * 109.47831 * 305.39051 * 22 9 8 41 41 H 1.08992 * 109.70680 * 65.89570 * 23 22 9 42 42 H 1.08995 * 109.70473 * 186.52282 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.5958 3.4693 0.8943 8 6 5.4515 2.8638 -0.0312 9 7 6.0018 4.2160 -0.1878 10 6 7.4576 4.2180 0.0085 11 1 7.7009 3.6873 0.9289 12 6 8.1227 3.5325 -1.1573 13 1 7.5238 3.1355 -1.9635 14 6 9.4957 3.4131 -1.1949 15 7 10.0762 2.8154 -2.2125 16 14 10.5316 4.1004 0.1993 17 1 10.8944 5.5088 -0.1012 18 1 11.7681 3.2906 0.3431 19 1 9.7559 4.0483 1.4646 20 6 7.9573 5.6609 0.1045 21 6 7.3789 6.3185 1.3590 22 6 5.6455 4.7964 -1.4887 23 6 4.1277 5.0012 -1.5563 24 6 3.4566 3.6825 -1.2340 25 8 2.5808 3.2397 -1.9377 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.7686 2.2430 -0.8692 32 1 5.8137 2.4296 0.9006 33 1 11.0421 2.7311 -2.2388 34 1 9.0459 5.6654 0.1610 35 1 7.6370 6.2158 -0.7773 36 1 7.7345 7.3467 1.4272 37 1 6.2903 6.3141 1.3025 38 1 7.6992 5.7637 2.2408 39 1 6.1476 5.7564 -1.6082 40 1 5.9574 4.1212 -2.2856 41 1 3.8258 5.7548 -0.8290 42 1 3.8446 5.3225 -2.5586 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:18 Heat of formation + Delta-G solvation = -116.884042 kcal Electronic energy + Delta-G solvation = -23627.840419 eV Core-core repulsion = 20187.386075 eV Total energy + Delta-G solvation = -3440.454344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81866 -39.27664 -37.68470 -36.54005 -34.01372 -32.11717 -31.89132 -31.09414 -30.21059 -26.91706 -24.72540 -23.20116 -22.97192 -22.06009 -21.32459 -19.71941 -18.84502 -17.60668 -16.84773 -16.58428 -16.46816 -15.64596 -15.25451 -15.00468 -14.58321 -14.17434 -14.02194 -13.71304 -13.53050 -13.05023 -12.85193 -12.77406 -12.55078 -12.09808 -12.03959 -11.81431 -11.75349 -11.61256 -11.55418 -11.21224 -11.04241 -10.98292 -10.49837 -10.43404 -10.32958 -10.23224 -9.81278 -9.63779 -9.33948 -9.22529 -8.63115 -7.45067 -6.17298 -4.19981 1.99585 2.28457 2.67384 3.21185 3.32863 3.34656 4.07420 4.31562 4.52629 4.72241 4.85452 4.91493 4.99191 5.12749 5.15670 5.19465 5.28881 5.45531 5.57532 5.66865 5.68597 5.85501 5.85869 5.92897 5.96122 6.09453 6.13850 6.26187 6.43670 6.50986 6.54803 6.61642 6.68970 6.80212 6.98063 7.09109 7.38269 7.53393 7.79792 7.88876 7.90347 8.35561 8.83225 9.44483 10.95269 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.004898 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.011465 B = 5715.580559 C = 6135.093293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.348 6.348 4 C 0.476 3.524 5 O -0.497 6.497 6 C -0.131 4.131 7 H 0.143 0.857 8 C 0.085 3.915 9 N -0.528 5.528 10 C 0.185 3.815 11 H 0.043 0.957 12 C -0.552 4.552 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.894 5.894 16 Si 0.887 3.113 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.263 1.263 20 C -0.122 4.122 21 C -0.145 4.145 22 C 0.060 3.940 23 C -0.159 4.159 24 C 0.376 3.624 25 O -0.449 6.449 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.265 0.735 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.636 2.403 6.255 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.264 6.264 4 C 0.318 3.682 5 O -0.383 6.383 6 C -0.151 4.151 7 H 0.161 0.839 8 C -0.044 4.044 9 N -0.252 5.252 10 C 0.078 3.922 11 H 0.061 0.939 12 C -0.590 4.590 13 H 0.095 0.905 14 C -0.127 4.127 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.226 1.226 19 H -0.188 1.188 20 C -0.159 4.159 21 C -0.202 4.202 22 C -0.069 4.069 23 C -0.197 4.197 24 C 0.250 3.750 25 O -0.322 6.322 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.935 2.070 6.153 16.285 hybrid contribution 1.234 -0.372 0.089 1.292 sum -13.701 1.698 6.242 15.151 Atomic orbital electron populations 1.21783 0.92762 1.02690 1.03519 1.22993 0.95285 0.80512 1.02486 1.86529 1.24210 1.31976 1.83726 1.23162 0.80722 0.91951 0.72399 1.90700 1.60362 1.42659 1.44589 1.22054 0.99926 0.90616 1.02480 0.83943 1.21708 0.86664 0.92086 1.03974 1.62133 1.14742 1.18527 1.29796 1.19724 0.82280 0.92741 0.97443 0.93904 1.21585 0.92619 1.38112 1.06702 0.90504 1.24973 0.97969 0.94328 0.95409 1.69911 1.10411 1.42538 1.30211 0.86860 0.79641 0.78236 0.83546 1.20451 1.22553 1.18791 1.21946 0.98950 0.97973 0.97071 1.21749 1.01669 0.98450 0.98329 1.22028 0.90845 1.01714 0.92292 1.22434 0.97927 0.95539 1.03805 1.24627 0.79559 0.87510 0.83272 1.90428 1.25881 1.67681 1.48165 0.91616 0.91376 0.90426 0.91282 0.91360 0.92283 0.89460 0.92536 0.93286 0.92061 0.94704 0.91884 0.93896 0.89199 0.92917 0.87726 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.16 0.38 -0.96 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.35 -5.25 9.49 -44.60 -0.42 -5.68 16 4 C 0.48 7.95 6.90 36.00 0.25 8.20 16 5 O -0.50 -9.61 15.68 -18.75 -0.29 -9.90 16 6 C -0.13 -1.97 3.08 -92.41 -0.28 -2.26 16 7 H 0.14 1.72 8.14 -51.93 -0.42 1.29 16 8 C 0.08 1.52 3.85 -3.71 -0.01 1.50 16 9 N -0.53 -9.41 3.97 -227.77 -0.90 -10.32 16 10 C 0.19 3.94 1.29 -68.86 -0.09 3.85 16 11 H 0.04 0.96 6.98 -51.93 -0.36 0.60 16 12 C -0.55 -14.31 7.90 -34.44 -0.27 -14.58 16 13 H 0.08 2.20 6.18 -52.49 -0.32 1.87 16 14 C 0.08 2.10 5.45 -17.82 -0.10 2.01 16 15 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 16 Si 0.89 20.99 24.41 -169.99 -4.15 16.84 16 17 H -0.28 -6.39 6.83 56.52 0.39 -6.00 16 18 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.26 -5.91 6.53 56.52 0.37 -5.55 16 20 C -0.12 -2.38 4.83 -26.73 -0.13 -2.50 16 21 C -0.14 -2.32 9.80 37.16 0.36 -1.96 16 22 C 0.06 1.00 4.75 -3.70 -0.02 0.98 16 23 C -0.16 -2.13 6.35 -27.37 -0.17 -2.30 16 24 C 0.38 5.82 6.62 -28.31 -0.19 5.63 16 25 O -0.45 -8.02 16.45 -8.62 -0.14 -8.16 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 30 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 31 H 0.06 1.26 7.22 -51.93 -0.38 0.89 16 32 H 0.09 1.57 7.93 -51.93 -0.41 1.15 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.05 1.05 3.21 -51.93 -0.17 0.88 16 35 H 0.06 1.15 6.17 -51.93 -0.32 0.83 16 36 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.46 6.01 -51.93 -0.31 1.15 16 40 H 0.05 1.04 6.50 -51.93 -0.34 0.70 16 41 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -31.10 329.38 -6.64 -37.74 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.42 Total: 1.65 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.04 Total: -1.42 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.13 Total: -36.03 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.86 Total: -23.74 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.15 Total: 16.84 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.10 -6.64 -37.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.145 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds