Wall clock time and date at job start Tue Mar 31 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45204 * 109.46805 * 2 1 4 4 C 1.34231 * 116.99999 * 179.97438 * 3 2 1 5 5 O 1.20819 * 119.99757 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99901 * 180.02562 * 4 3 2 7 7 H 1.08993 * 109.70676 * 60.00350 * 6 4 3 8 8 C 1.53299 * 109.70681 * 180.58992 * 6 4 3 9 9 N 1.46827 * 109.39894 * 173.52157 * 8 6 4 10 10 C 1.46897 * 110.99891 * 170.24392 * 9 8 6 11 11 H 1.09006 * 109.47218 * 62.99259 * 10 9 8 12 12 C 1.50704 * 109.47564 * 302.99052 * 10 9 8 13 13 H 1.08000 * 119.99798 * 359.97438 * 12 10 9 14 14 C 1.37874 * 119.99915 * 180.02562 * 12 10 9 15 15 N 1.31509 * 120.00491 * 359.97438 * 14 12 10 16 16 Si 1.86808 * 119.99718 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47286 * 59.99529 * 16 14 12 18 18 H 1.48502 * 109.46863 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46767 * 299.99550 * 16 14 12 20 20 C 1.53004 * 109.47214 * 182.98809 * 10 9 8 21 21 C 1.53000 * 109.46850 * 57.46334 * 20 10 9 22 22 C 1.46826 * 111.56588 * 294.61434 * 9 8 6 23 23 C 1.53294 * 109.40032 * 65.38813 * 22 9 8 24 24 C 1.51434 * 109.70942 * 299.41966 * 6 4 3 25 25 O 1.20759 * 121.11179 * 11.22861 * 24 6 4 26 26 H 1.08998 * 109.47036 * 300.00096 * 1 2 3 27 27 H 1.09003 * 109.46741 * 60.00378 * 1 2 3 28 28 H 1.09000 * 109.46640 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47345 * 240.00352 * 2 1 3 30 30 H 1.08999 * 109.47096 * 119.99259 * 2 1 3 31 31 H 1.09003 * 109.48606 * 293.50026 * 8 6 4 32 32 H 1.08996 * 109.48325 * 53.54749 * 8 6 4 33 33 H 0.96997 * 120.00753 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.47069 * 177.46578 * 20 10 9 35 35 H 1.08999 * 109.46882 * 297.46688 * 20 10 9 36 36 H 1.09005 * 109.46699 * 184.88665 * 21 20 10 37 37 H 1.08996 * 109.47314 * 304.88703 * 21 20 10 38 38 H 1.08997 * 109.47053 * 64.88948 * 21 20 10 39 39 H 1.09001 * 109.48010 * 185.36585 * 22 9 8 40 40 H 1.08999 * 109.48174 * 305.39073 * 22 9 8 41 41 H 1.09000 * 109.70823 * 65.89324 * 23 22 9 42 42 H 1.09003 * 109.70919 * 186.47656 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9376 0.0012 7 1 3.5867 3.4730 0.8898 8 6 5.4518 2.8638 -0.0132 9 7 6.0037 4.2155 -0.1688 10 6 7.4573 4.2182 0.0435 11 1 7.9368 3.6028 -0.7179 12 6 7.7668 3.6600 1.4087 13 1 6.9639 3.3360 2.0543 14 6 9.0748 3.5639 1.8339 15 7 10.0524 3.9588 1.0480 16 14 9.4584 2.8713 3.5259 17 1 8.9477 1.4800 3.6187 18 1 10.9278 2.8742 3.7404 19 1 8.8045 3.7088 4.5634 20 6 7.9842 5.6514 -0.0529 21 6 7.2652 6.5291 0.9735 22 6 5.6616 4.7910 -1.4755 23 6 4.1448 4.9956 -1.5604 24 6 3.4691 3.6775 -1.2406 25 8 2.6010 3.2314 -1.9517 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 5.8039 2.4330 0.9242 32 1 5.7779 2.2400 -0.8453 33 1 10.9727 3.8908 1.3469 34 1 9.0552 5.6591 0.1490 35 1 7.8005 6.0393 -1.0549 36 1 7.5769 7.5659 0.8467 37 1 6.1880 6.4529 0.8258 38 1 7.5187 6.1939 1.9792 39 1 6.1651 5.7506 -1.5931 40 1 5.9821 4.1130 -2.2665 41 1 3.8350 5.7519 -0.8392 42 1 3.8726 5.3140 -2.5667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:20 Heat of formation + Delta-G solvation = -120.730095 kcal Electronic energy + Delta-G solvation = -23602.188476 eV Core-core repulsion = 20161.567355 eV Total energy + Delta-G solvation = -3440.621121 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79992 -39.25963 -37.55315 -36.50140 -33.98583 -32.13769 -31.52489 -31.01896 -29.86063 -26.27723 -24.90266 -23.44247 -22.88293 -22.06815 -21.22830 -19.40411 -18.69846 -17.61636 -16.70212 -16.50339 -16.08696 -15.60012 -15.26923 -14.72764 -14.53336 -14.34076 -13.82170 -13.59864 -13.54320 -13.11681 -12.93773 -12.67837 -12.13055 -12.08116 -11.89743 -11.71715 -11.53272 -11.49735 -11.24984 -11.16227 -10.91277 -10.68168 -10.48777 -10.44219 -10.21897 -10.02243 -9.81355 -9.53440 -9.32486 -8.85919 -8.44680 -7.39797 -6.05782 -4.10370 1.97345 2.30345 2.69657 3.30663 3.35274 3.38138 4.07821 4.35839 4.58816 4.78557 4.86249 4.92381 5.03428 5.13334 5.19823 5.27381 5.30152 5.40001 5.54995 5.66850 5.68402 5.85811 5.87351 6.04963 6.17477 6.26972 6.38085 6.51302 6.53749 6.59235 6.70324 7.04867 7.18683 7.27855 7.48871 7.54886 7.63620 7.76598 7.85661 7.98793 8.23576 8.44559 8.92847 9.54227 11.00417 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.005363 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.871302 B = 5219.625166 C = 6390.423390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.348 6.348 4 C 0.477 3.523 5 O -0.498 6.498 6 C -0.131 4.131 7 H 0.146 0.854 8 C 0.085 3.915 9 N -0.531 5.531 10 C 0.220 3.780 11 H 0.002 0.998 12 C -0.503 4.503 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C -0.113 4.113 21 C -0.122 4.122 22 C 0.050 3.950 23 C -0.156 4.156 24 C 0.375 3.625 25 O -0.451 6.451 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.095 0.905 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.029 0.971 41 H 0.108 0.892 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.681 -0.381 -2.532 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.265 6.265 4 C 0.319 3.681 5 O -0.385 6.385 6 C -0.152 4.152 7 H 0.163 0.837 8 C -0.043 4.043 9 N -0.257 5.257 10 C 0.115 3.885 11 H 0.020 0.980 12 C -0.541 4.541 13 H 0.081 0.919 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.151 4.151 21 C -0.180 4.180 22 C -0.079 4.079 23 C -0.194 4.194 24 C 0.250 3.750 25 O -0.324 6.324 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.047 0.953 41 H 0.127 0.873 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.926 -0.639 -2.565 14.175 hybrid contribution 0.735 -1.033 0.408 1.332 sum -13.191 -1.672 -2.157 13.470 Atomic orbital electron populations 1.21784 0.92776 1.02666 1.03532 1.22990 0.95285 0.80569 1.02436 1.86536 1.24277 1.31923 1.83730 1.23194 0.80660 0.91990 0.72262 1.90682 1.60385 1.42692 1.44728 1.22100 1.00261 0.90507 1.02295 0.83686 1.21822 0.86406 0.91559 1.04551 1.61876 1.17541 1.19073 1.27171 1.19261 0.78889 0.93661 0.96665 0.98005 1.20995 0.91985 1.41001 1.00169 0.91864 1.24866 0.96265 0.95392 0.97289 1.69845 0.99511 1.47268 1.36321 0.86637 0.77108 0.79659 0.84510 1.20300 1.21384 1.20178 1.21614 1.03371 0.95350 0.94749 1.21477 0.99812 0.95826 1.00872 1.22161 0.92371 1.01592 0.91782 1.22384 0.97396 0.95865 1.03765 1.24691 0.79372 0.87377 0.83569 1.90420 1.26109 1.67468 1.48417 0.91563 0.91419 0.90448 0.91392 0.91315 0.87210 0.94476 0.92837 0.88699 0.96589 0.96527 0.93421 0.92603 0.88843 0.95325 0.87349 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.35 -5.37 9.53 -44.49 -0.42 -5.79 16 4 C 0.48 8.16 6.88 36.01 0.25 8.41 16 5 O -0.50 -9.73 15.67 -18.74 -0.29 -10.03 16 6 C -0.13 -2.08 3.08 -92.41 -0.28 -2.37 16 7 H 0.15 1.99 8.14 -51.93 -0.42 1.56 16 8 C 0.09 1.60 3.97 -3.71 -0.01 1.58 16 9 N -0.53 -10.01 3.48 -227.78 -0.79 -10.80 16 10 C 0.22 5.04 1.77 -68.86 -0.12 4.92 16 11 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 12 C -0.50 -12.65 6.75 -34.44 -0.23 -12.88 16 13 H 0.06 1.59 6.52 -52.49 -0.34 1.24 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.12 11.30 55.43 0.63 -23.50 16 16 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.11 -2.45 5.04 -26.73 -0.13 -2.58 16 21 C -0.12 -2.42 9.50 37.16 0.35 -2.07 16 22 C 0.05 0.79 5.26 -3.71 -0.02 0.77 16 23 C -0.16 -2.05 6.35 -27.32 -0.17 -2.23 16 24 C 0.38 5.77 6.63 -28.27 -0.19 5.59 16 25 O -0.45 -7.89 16.47 -8.14 -0.13 -8.02 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.11 2.27 6.00 -51.93 -0.31 1.96 16 32 H 0.04 0.75 7.89 -51.93 -0.41 0.34 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.09 2.36 6.01 -51.93 -0.31 2.05 16 35 H 0.02 0.31 6.31 -51.93 -0.33 -0.02 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.05 0.87 7.35 -51.93 -0.38 0.49 16 38 H 0.05 1.22 7.47 -51.93 -0.39 0.83 16 39 H 0.09 1.45 5.83 -51.93 -0.30 1.14 16 40 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -29.01 335.51 -7.59 -36.60 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.56 Total: 0.21 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.05 Total: 0.70 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.17 Total: -34.30 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.85 Total: -23.84 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.01 -7.59 -36.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.126 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds