Wall clock time and date at job start Tue Mar 31 2020 05:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45200 * 109.47368 * 2 1 4 4 C 1.34220 * 117.00511 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00010 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00193 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.62261 * 60.38071 * 6 4 3 8 8 C 1.51318 * 109.62513 * 300.00179 * 6 4 3 9 9 O 1.20758 * 121.00841 * 9.79684 * 8 6 4 10 10 C 1.51421 * 117.98706 * 189.81856 * 8 6 4 11 11 C 1.53382 * 108.11947 * 49.09937 * 10 8 6 12 12 C 1.53017 * 109.18864 * 307.49842 * 11 10 8 13 13 N 1.46932 * 109.82139 * 62.81580 * 12 11 10 14 14 C 1.46903 * 110.97683 * 170.58474 * 13 12 11 15 15 H 1.08998 * 109.47061 * 179.20326 * 14 13 12 16 16 C 1.50695 * 109.46918 * 59.20156 * 14 13 12 17 17 H 1.07997 * 120.00618 * 0.02562 * 16 14 13 18 18 C 1.37884 * 119.99630 * 180.02562 * 16 14 13 19 19 N 1.31511 * 120.00279 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99741 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47546 * 89.99927 * 20 18 16 22 22 H 1.48499 * 109.47090 * 209.99941 * 20 18 16 23 23 H 1.48497 * 109.47169 * 329.99905 * 20 18 16 24 24 C 1.52998 * 109.46778 * 299.20459 * 14 13 12 25 25 C 1.53006 * 109.47123 * 294.99551 * 24 14 13 26 26 H 1.09005 * 109.47471 * 60.00154 * 1 2 3 27 27 H 1.09005 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47488 * 299.99791 * 1 2 3 29 29 H 1.09006 * 109.47475 * 240.00121 * 2 1 3 30 30 H 1.08996 * 109.47218 * 119.99850 * 2 1 3 31 31 H 1.09000 * 109.73536 * 289.44541 * 10 8 6 32 32 H 1.09003 * 109.77123 * 168.77306 * 10 8 6 33 33 H 1.09002 * 109.52881 * 67.43223 * 11 10 8 34 34 H 1.08998 * 109.52775 * 187.57138 * 11 10 8 35 35 H 1.09000 * 109.40243 * 183.01892 * 12 11 10 36 36 H 1.08994 * 109.40227 * 302.76160 * 12 11 10 37 37 H 0.96997 * 120.00249 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.47595 * 54.99980 * 24 14 13 39 39 H 1.09005 * 109.47028 * 175.00090 * 24 14 13 40 40 H 1.08994 * 109.47168 * 300.00097 * 25 24 14 41 41 H 1.08996 * 109.46837 * 60.00585 * 25 24 14 42 42 H 1.09007 * 109.46894 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5912 3.4702 0.8920 8 6 3.4569 3.6788 -1.2350 9 8 2.5999 3.2194 -1.9512 10 6 4.1002 5.0138 -1.5459 11 6 5.6220 4.8408 -1.4627 12 6 5.9835 4.2091 -0.1167 13 7 5.3898 2.8686 -0.0200 14 6 5.8992 2.1514 1.1566 15 1 5.4332 1.1677 1.2124 16 6 5.5718 2.9338 2.4023 17 1 5.0383 3.8698 2.3276 18 6 5.9534 2.4544 3.6375 19 7 6.6035 1.3149 3.7286 20 14 5.5470 3.4238 5.1817 21 1 4.2232 2.9958 5.7009 22 1 6.5871 3.1732 6.2116 23 1 5.5076 4.8731 4.8604 24 6 7.4162 1.9913 1.0389 25 6 7.7431 1.0928 -0.1556 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7742 5.7577 -0.8190 32 1 3.8205 5.3330 -2.5499 33 1 5.9599 4.1931 -2.2717 34 1 6.1046 5.8143 -1.5496 35 1 7.0676 4.1338 -0.0315 36 1 5.6007 4.8332 0.6907 37 1 6.8716 0.9775 4.5976 38 1 7.8747 2.9695 0.8940 39 1 7.8057 1.5391 1.9510 40 1 7.2846 0.1146 -0.0106 41 1 7.3537 1.5450 -1.0677 42 1 8.8239 0.9791 -0.2397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:08 Heat of formation + Delta-G solvation = -114.040910 kcal Electronic energy + Delta-G solvation = -24427.880221 eV Core-core repulsion = 20987.549165 eV Total energy + Delta-G solvation = -3440.331057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51812 -38.94345 -37.48443 -35.83263 -34.08047 -32.04654 -31.62346 -31.01640 -28.84218 -26.81154 -24.96293 -23.33549 -22.44941 -22.18659 -20.68321 -19.15381 -18.85148 -17.31746 -16.57042 -16.27460 -15.91255 -15.40661 -15.02517 -14.72047 -14.54624 -14.02923 -13.70534 -13.36064 -13.31232 -12.92070 -12.71626 -12.47735 -12.21243 -12.00797 -11.89666 -11.52170 -11.31832 -11.26990 -11.19348 -11.01147 -10.87717 -10.66397 -10.46700 -10.19342 -10.05048 -10.01169 -9.65669 -9.43175 -9.24794 -8.87559 -8.29322 -7.39440 -6.04780 -4.19396 2.11626 2.84422 3.06607 3.21683 3.29734 3.30457 4.28257 4.33439 4.76397 4.99766 5.09347 5.16046 5.18896 5.20499 5.24467 5.34812 5.51862 5.74000 5.77506 5.90275 5.95763 5.96731 5.97490 6.05706 6.12152 6.35067 6.47905 6.55283 6.62385 6.72450 6.92679 7.10361 7.18697 7.29647 7.53865 7.62513 7.69057 7.78524 8.06542 8.17446 8.35969 8.47298 8.89495 9.47801 10.94836 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.007843 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.154100 B = 3569.316000 C = 4381.296654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.355 6.355 4 C 0.481 3.519 5 O -0.473 6.473 6 C 0.051 3.949 7 H 0.113 0.887 8 C 0.379 3.621 9 O -0.448 6.448 10 C -0.164 4.164 11 C -0.115 4.115 12 C 0.051 3.949 13 N -0.506 5.506 14 C 0.196 3.804 15 H 0.077 0.923 16 C -0.557 4.557 17 H 0.055 0.945 18 C 0.072 3.928 19 N -0.877 5.877 20 Si 0.886 3.114 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.108 4.108 25 C -0.137 4.137 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.262 0.738 38 H 0.032 0.968 39 H 0.094 0.906 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 4.168 -7.419 10.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.010 4.010 3 O -0.272 6.272 4 C 0.322 3.678 5 O -0.358 6.358 6 C -0.059 4.059 7 H 0.130 0.870 8 C 0.253 3.747 9 O -0.319 6.319 10 C -0.201 4.201 11 C -0.153 4.153 12 C -0.077 4.077 13 N -0.234 5.234 14 C 0.091 3.909 15 H 0.095 0.905 16 C -0.596 4.596 17 H 0.073 0.927 18 C -0.131 4.131 19 N -0.515 5.515 20 Si 0.713 3.287 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.146 4.146 25 C -0.194 4.194 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.112 0.888 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.629 3.177 -8.093 10.357 hybrid contribution -0.317 0.844 1.909 2.111 sum -5.946 4.021 -6.184 9.474 Atomic orbital electron populations 1.21767 0.93165 1.02398 1.03292 1.22892 0.94876 0.80940 1.02321 1.86478 1.24718 1.31604 1.84446 1.22818 0.80279 0.91874 0.72868 1.90619 1.59658 1.42431 1.43044 1.21792 0.94068 0.90609 0.99423 0.87035 1.24645 0.79042 0.87548 0.83494 1.90403 1.26350 1.68200 1.46944 1.22337 0.98022 0.95993 1.03789 1.21698 0.92681 1.01215 0.99688 1.22126 1.01304 0.89581 0.94673 1.62621 0.98625 1.16628 1.45541 1.19829 0.92689 0.95600 0.82810 0.90530 1.21722 1.38063 1.07458 0.92339 0.92706 1.24877 0.94669 0.94780 0.98785 1.69881 1.37997 1.19139 1.24447 0.86705 0.78198 0.80425 0.83345 1.20719 1.21077 1.19933 1.21610 0.97469 0.97169 0.98367 1.21688 0.97690 1.00346 0.99698 0.91647 0.90672 0.91674 0.91640 0.91372 0.88443 0.89395 0.90956 0.90686 0.89080 0.93529 0.92758 0.94897 0.88795 0.93825 0.93563 0.95746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.29 37.15 0.38 -1.39 16 2 C 0.06 1.01 6.19 37.15 0.23 1.24 16 3 O -0.36 -6.85 9.50 -44.58 -0.42 -7.27 16 4 C 0.48 10.32 6.58 36.01 0.24 10.55 16 5 O -0.47 -11.33 13.59 -18.75 -0.25 -11.58 16 6 C 0.05 1.01 2.29 -69.60 -0.16 0.85 16 7 H 0.11 2.19 6.82 -51.93 -0.35 1.84 16 8 C 0.38 6.49 6.71 -28.38 -0.19 6.29 16 9 O -0.45 -8.59 16.43 -8.63 -0.14 -8.73 16 10 C -0.16 -2.11 6.24 -27.33 -0.17 -2.28 16 11 C -0.11 -1.51 6.12 -26.52 -0.16 -1.67 16 12 C 0.05 0.86 4.69 -3.80 -0.02 0.85 16 13 N -0.51 -10.29 3.71 -222.31 -0.83 -11.11 16 14 C 0.20 4.70 1.36 -68.87 -0.09 4.61 16 15 H 0.08 2.14 5.26 -51.93 -0.27 1.86 16 16 C -0.56 -14.13 7.15 -34.44 -0.25 -14.38 16 17 H 0.05 1.35 5.87 -52.49 -0.31 1.04 16 18 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 19 N -0.88 -24.24 11.29 55.43 0.63 -23.62 16 20 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.11 -2.50 5.07 -26.73 -0.14 -2.64 16 25 C -0.14 -2.87 9.80 37.16 0.36 -2.51 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.59 5.78 -51.93 -0.30 1.29 16 36 H 0.05 0.82 6.75 -51.93 -0.35 0.47 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.03 0.72 5.99 -51.93 -0.31 0.41 16 39 H 0.09 2.46 5.95 -51.93 -0.31 2.15 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -30.03 331.18 -7.50 -37.53 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.39 Total: 3.11 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.06 Total: 1.34 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.20 Total: -34.73 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.82 Total: -27.59 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.03 -7.50 -37.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.515 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds